Wall clock time and date at job start Tue Mar 31 2020 16:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00377 * 2 1 4 4 C 1.52993 * 109.47622 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.47039 * 65.00060 * 4 3 2 6 6 C 1.46901 * 110.99870 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46916 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.45529 * 305.02259 * 7 6 5 9 9 C 1.53033 * 109.46136 * 64.99814 * 7 6 5 10 10 C 1.53191 * 109.31291 * 181.38424 * 9 7 6 11 11 N 1.46924 * 108.77538 * 305.36382 * 10 9 7 12 12 C 1.34775 * 120.63351 * 233.62811 * 11 10 9 13 13 O 1.21279 * 120.00491 * 179.97438 * 12 11 10 14 14 C 1.50708 * 119.99680 * 0.02562 * 12 11 10 15 15 S 1.80999 * 109.46689 * 180.02562 * 14 12 11 16 16 C 1.76200 * 99.99612 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00719 * 359.97438 * 16 15 14 18 18 C 1.38807 * 120.00120 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00117 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99662 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47135 * 90.00168 * 20 18 16 22 22 H 1.48496 * 109.46816 * 210.00112 * 20 18 16 23 23 H 1.48501 * 109.47107 * 329.99747 * 20 18 16 24 24 C 1.46924 * 118.73814 * 53.61122 * 11 10 9 25 25 C 1.53045 * 109.45743 * 185.06760 * 7 6 5 26 26 H 1.08996 * 109.49629 * 58.66272 * 25 7 6 27 27 C 1.53000 * 109.49521 * 298.56276 * 25 7 6 28 28 H 1.08999 * 109.47157 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46519 * 299.99873 * 1 2 3 30 30 H 1.09000 * 109.47460 * 59.99634 * 1 2 3 31 31 H 1.09008 * 109.46886 * 59.99754 * 3 2 1 32 32 H 1.09008 * 109.46909 * 300.00659 * 3 2 1 33 33 H 1.09001 * 109.47393 * 305.00341 * 4 3 2 34 34 H 1.08998 * 109.47408 * 184.99987 * 4 3 2 35 35 H 1.00901 * 110.99869 * 56.04956 * 5 4 3 36 36 H 1.09004 * 109.47031 * 299.99620 * 6 5 4 37 37 H 1.08995 * 109.47111 * 59.99900 * 6 5 4 38 38 H 1.09003 * 109.50190 * 301.33678 * 9 7 6 39 39 H 1.09004 * 109.50051 * 61.39967 * 9 7 6 40 40 H 1.08995 * 109.58456 * 65.15399 * 10 9 7 41 41 H 1.09004 * 109.58658 * 185.57402 * 10 9 7 42 42 H 1.09001 * 109.46888 * 299.99388 * 14 12 11 43 43 H 1.08996 * 109.47142 * 59.99696 * 14 12 11 44 44 H 0.96996 * 119.99654 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.59126 * 66.17519 * 24 11 10 46 46 H 1.08998 * 109.58697 * 186.46127 * 24 11 10 47 47 H 1.09005 * 109.47321 * 60.00663 * 27 25 7 48 48 H 1.08998 * 109.47127 * 179.97438 * 27 25 7 49 49 H 1.08999 * 109.47389 * 300.00175 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9769 0.5627 -1.2562 6 6 5.4394 0.4298 -1.2921 7 6 5.8602 -0.2199 -2.6119 8 1 5.3341 -1.1665 -2.7346 9 6 5.5096 0.7126 -3.7737 10 6 5.9007 0.0442 -5.0955 11 7 7.3189 -0.3344 -5.0325 12 6 8.1793 0.0641 -5.9902 13 8 9.3478 -0.2546 -5.9266 14 6 7.6897 0.9069 -7.1396 15 16 9.0716 1.2754 -8.2490 16 6 8.2390 2.2427 -9.4638 17 1 7.1808 2.4360 -9.3680 18 6 8.9432 2.7564 -10.5441 19 7 8.3213 3.4794 -11.4514 20 14 10.7737 2.4227 -10.7095 21 1 10.9811 1.1740 -11.4861 22 1 11.4219 3.5575 -11.4146 23 1 11.3733 2.2713 -9.3594 24 6 7.7815 -1.1556 -3.9053 25 6 7.3694 -0.4738 -2.5968 26 1 7.6213 -1.1190 -1.7553 27 6 8.1099 0.8581 -2.4596 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5682 0.8409 34 1 3.9785 2.1765 0.0889 35 1 3.6409 1.0810 -2.0541 36 1 5.8960 1.4162 -1.2113 37 1 5.7682 -0.1921 -0.4595 38 1 4.4380 0.9117 -3.7698 39 1 6.0543 1.6505 -3.6646 40 1 5.2912 -0.8462 -5.2490 41 1 5.7451 0.7423 -5.9180 42 1 6.9200 0.3629 -7.6870 43 1 7.2731 1.8381 -6.7558 44 1 8.8134 3.8380 -12.2064 45 1 7.3253 -2.1439 -3.9617 46 1 8.8666 -1.2512 -3.9439 47 1 7.8142 1.3442 -1.5299 48 1 9.1846 0.6767 -2.4485 49 1 7.8584 1.5021 -3.3023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183946621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:29 Heat of formation + Delta-G solvation = -88.213953 kcal Electronic energy + Delta-G solvation = -26389.978735 eV Core-core repulsion = 22671.025671 eV Total energy + Delta-G solvation = -3718.953064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.38981 -38.57858 -37.97699 -35.93223 -33.76801 -32.43456 -32.02090 -29.90781 -29.48312 -27.23962 -26.52020 -25.88531 -25.53452 -23.43234 -22.59572 -22.06485 -20.07976 -18.45169 -17.70179 -17.17069 -16.79893 -16.47736 -16.04825 -15.59762 -15.50716 -15.31520 -14.96066 -14.92939 -14.55792 -14.14346 -13.82227 -13.78833 -13.64027 -13.24112 -13.05411 -12.87437 -12.78469 -12.45063 -12.31763 -12.04717 -12.01846 -11.81388 -11.60671 -11.44128 -11.26004 -11.16233 -11.00635 -10.86976 -10.58883 -10.49070 -10.45649 -10.03308 -9.85102 -9.40920 -8.99941 -8.71821 -8.50416 -8.47553 -6.91030 -6.28644 -4.00024 2.74598 2.98011 3.23262 3.33771 3.41232 3.51054 3.60556 3.76859 4.33414 4.45907 4.47325 4.58873 4.63887 4.72359 4.73938 4.89054 4.92296 4.99042 5.00521 5.05706 5.10018 5.10527 5.12044 5.17366 5.24562 5.31981 5.35047 5.37894 5.46605 5.58913 5.66167 5.67480 5.69938 5.73284 5.77555 5.80166 5.94652 6.00445 6.03809 6.07343 6.31159 6.63191 6.64392 6.81932 7.05631 7.53149 7.94436 8.41681 8.49211 9.17724 10.80546 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.002262 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.695736 B =12374.216707 C =13275.440872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.063 3.937 4 C 0.059 3.941 5 N -0.682 5.682 6 C 0.064 3.936 7 C -0.079 4.079 8 H 0.082 0.918 9 C -0.134 4.134 10 C 0.108 3.892 11 N -0.615 5.615 12 C 0.534 3.466 13 O -0.521 6.521 14 C -0.121 4.121 15 S -0.143 6.143 16 C -0.520 4.520 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.118 3.882 25 C -0.099 4.099 26 H 0.080 0.920 27 C -0.148 4.148 28 H 0.085 0.915 29 H 0.037 0.963 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.340 0.660 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.270 0.730 45 H 0.064 0.936 46 H 0.093 0.907 47 H 0.052 0.948 48 H 0.055 0.945 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.289 -5.668 25.274 29.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.294 6.294 3 C -0.014 4.014 4 C -0.070 4.070 5 N -0.314 5.314 6 C -0.065 4.065 7 C -0.098 4.098 8 H 0.101 0.899 9 C -0.173 4.173 10 C -0.015 4.015 11 N -0.350 5.350 12 C 0.321 3.679 13 O -0.395 6.395 14 C -0.271 4.271 15 S 0.083 5.917 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C -0.005 4.005 25 C -0.118 4.118 26 H 0.098 0.902 27 C -0.205 4.205 28 H 0.104 0.896 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.159 0.841 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.111 0.889 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.536 -6.835 25.419 28.739 hybrid contribution -0.806 1.633 -0.531 1.897 sum -12.341 -5.202 24.888 28.263 Atomic orbital electron populations 1.22742 0.81521 1.02763 0.99670 1.88010 1.19031 1.27073 1.95253 1.22551 0.93555 0.85306 0.99982 1.21967 0.93176 0.97759 0.94097 1.60430 1.11070 1.56102 1.03840 1.22051 0.87114 0.99265 0.98041 1.21145 0.95242 0.99720 0.93677 0.89939 1.22049 1.01331 0.99366 0.94518 1.21708 0.81407 1.00106 0.98271 1.48018 1.09027 1.53605 1.24393 1.20263 0.85591 0.79504 0.82513 1.90681 1.16909 1.55748 1.76209 1.23306 1.04386 1.01706 0.97745 1.84794 1.12661 1.68538 1.25708 1.22311 0.98734 1.36693 1.09041 0.89432 1.24717 0.98881 0.93480 0.94265 1.69937 1.36790 1.33251 1.11741 0.86734 0.85100 0.78795 0.81218 1.19205 1.19973 1.15934 1.21560 1.01624 0.92924 0.84377 1.21480 0.94671 0.97920 0.97757 0.90174 1.21883 1.00194 0.96884 1.01533 0.89647 0.94452 0.94161 0.93023 0.93394 0.90127 0.93805 0.84127 0.94938 0.90998 0.90780 0.91111 0.91283 0.89260 0.88634 0.88667 0.91963 0.91806 0.88888 0.92888 0.92590 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.33 10.65 -35.23 -0.38 -3.70 16 3 C 0.06 0.42 6.22 37.15 0.23 0.65 16 4 C 0.06 0.40 6.07 -3.82 -0.02 0.38 16 5 N -0.68 -5.27 6.45 -113.78 -0.73 -6.01 16 6 C 0.06 0.49 4.68 -3.82 -0.02 0.47 16 7 C -0.08 -0.65 2.13 -90.58 -0.19 -0.84 16 8 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 9 C -0.13 -1.15 4.82 -26.62 -0.13 -1.28 16 10 C 0.11 1.14 6.34 -3.71 -0.02 1.12 16 11 N -0.61 -8.28 2.41 -172.77 -0.42 -8.70 16 12 C 0.53 9.70 7.72 -10.98 -0.08 9.62 16 13 O -0.52 -11.36 15.27 5.56 0.08 -11.27 16 14 C -0.12 -2.37 4.50 36.01 0.16 -2.21 16 15 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 16 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 17 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 18 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 19 N -0.88 -26.57 13.97 55.49 0.78 -25.80 16 20 Si 0.86 21.89 27.74 -169.99 -4.72 17.17 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 24 C 0.12 1.37 5.83 -3.71 -0.02 1.35 16 25 C -0.10 -0.90 2.72 -90.50 -0.25 -1.15 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 C -0.15 -1.51 8.38 37.16 0.31 -1.20 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.05 0.29 8.14 -51.92 -0.42 -0.14 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.34 2.44 6.96 -39.29 -0.27 2.17 16 36 H 0.03 0.25 6.74 -51.93 -0.35 -0.10 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.54 6.62 -51.93 -0.34 0.19 16 39 H 0.07 0.68 6.34 -51.93 -0.33 0.35 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.98 5.93 -51.93 -0.31 0.67 16 42 H 0.10 1.76 7.94 -51.91 -0.41 1.35 16 43 H 0.10 1.74 7.69 -51.92 -0.40 1.34 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 47 H 0.05 0.46 6.58 -51.93 -0.34 0.12 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.73 5.97 -51.93 -0.31 0.42 16 LS Contribution 391.91 15.07 5.91 5.91 Total: -1.00 -34.05 391.91 -8.68 -42.73 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -8.50 Total: -0.86 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 1.29 Total: -3.80 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -0.37 Total: -40.51 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.29 Total: -14.98 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.72 Total: 17.17 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.05 -8.68 -42.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183946621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.483 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds