Wall clock time and date at job start Tue Mar 31 2020 16:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46838 * 2 1 4 4 O 1.42905 * 109.47022 * 239.99974 * 2 1 3 5 5 C 1.53002 * 109.46860 * 120.00222 * 2 1 3 6 6 C 1.52999 * 109.47088 * 185.00199 * 5 2 1 7 7 C 1.53001 * 109.47461 * 180.02562 * 6 5 2 8 8 N 1.46892 * 109.47210 * 179.97438 * 7 6 5 9 9 C 1.46904 * 110.99734 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.49755 * 325.06001 * 9 8 7 11 11 C 1.53043 * 109.49418 * 204.99775 * 9 8 7 12 12 C 1.53046 * 109.53700 * 178.64978 * 11 9 8 13 13 C 1.53195 * 109.30793 * 61.36640 * 12 11 9 14 14 N 1.46923 * 108.77575 * 305.36150 * 13 12 11 15 15 C 1.34772 * 120.63343 * 233.58368 * 14 13 12 16 16 O 1.21280 * 120.00243 * 180.02562 * 15 14 13 17 17 C 1.50699 * 119.99949 * 0.03442 * 15 14 13 18 18 S 1.81008 * 109.47334 * 179.97438 * 17 15 14 19 19 C 1.76195 * 99.99880 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00692 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99856 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99590 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00107 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47109 * 89.99832 * 23 21 19 25 25 H 1.48499 * 109.47496 * 209.99584 * 23 21 19 26 26 H 1.48498 * 109.47198 * 329.99811 * 23 21 19 27 27 C 1.46931 * 118.73730 * 53.61542 * 14 13 12 28 28 H 1.08997 * 109.47489 * 300.00043 * 1 2 3 29 29 H 1.09000 * 109.46829 * 60.00043 * 1 2 3 30 30 H 1.09005 * 109.47369 * 179.97438 * 1 2 3 31 31 H 0.96700 * 114.00095 * 299.99953 * 4 2 1 32 32 H 1.08993 * 109.47172 * 65.00029 * 5 2 1 33 33 H 1.09004 * 109.47018 * 304.99903 * 5 2 1 34 34 H 1.09000 * 109.47440 * 59.99234 * 6 5 2 35 35 H 1.09004 * 109.46949 * 299.99746 * 6 5 2 36 36 H 1.08997 * 109.46947 * 59.99196 * 7 6 5 37 37 H 1.09000 * 109.46309 * 299.99815 * 7 6 5 38 38 H 1.00898 * 110.99955 * 303.95121 * 8 7 6 39 39 H 1.08998 * 109.46060 * 58.63451 * 11 9 8 40 40 H 1.08998 * 109.45045 * 298.66435 * 11 9 8 41 41 H 1.08990 * 109.49711 * 181.31709 * 12 11 9 42 42 H 1.08999 * 109.49785 * 301.41955 * 12 11 9 43 43 H 1.08996 * 109.58476 * 65.15647 * 13 12 11 44 44 H 1.09006 * 109.58092 * 185.57719 * 13 12 11 45 45 H 1.09002 * 109.47044 * 299.99355 * 17 15 14 46 46 H 1.09001 * 109.47565 * 59.99202 * 17 15 14 47 47 H 0.97000 * 119.99622 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.58511 * 186.59744 * 27 14 13 49 49 H 1.09004 * 109.58611 * 66.17544 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7213 1.2492 6 6 3.5647 -0.6133 1.3138 7 6 4.0748 -1.3352 2.5627 8 7 5.5388 -1.2320 2.6242 9 6 6.0651 -1.9149 3.8137 10 1 5.3639 -1.7985 4.6401 11 6 7.4143 -1.3035 4.1985 12 6 7.9475 -1.9915 5.4573 13 6 8.1563 -3.4817 5.1702 14 7 6.8989 -4.0459 4.6610 15 6 6.3491 -5.1316 5.2399 16 8 5.3110 -5.5881 4.8099 17 6 7.0241 -5.7785 6.4219 18 16 6.0489 -7.2017 6.9694 19 6 7.0394 -7.7502 8.3193 20 1 7.9476 -7.2233 8.5720 21 6 6.6530 -8.8604 9.0576 22 7 5.5464 -9.5029 8.7494 23 14 7.7035 -9.4424 10.4883 24 1 7.2595 -8.7683 11.7348 25 1 7.5596 -10.9123 10.6423 26 1 9.1265 -9.1092 10.2253 27 6 6.2525 -3.4042 3.5080 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.7210 -1.5952 -1.2329 32 1 1.7516 -1.7715 1.2055 33 1 1.6053 -0.2618 2.1370 34 1 3.8531 0.4369 1.3574 35 1 3.9994 -1.0729 0.4260 36 1 3.7864 -2.3854 2.5185 37 1 3.6401 -0.8760 3.4505 38 1 5.9624 -1.5929 1.7826 39 1 7.2881 -0.2384 4.3927 40 1 8.1220 -1.4423 3.3813 41 1 8.8970 -1.5398 5.7443 42 1 7.2286 -1.8744 6.2682 43 1 8.9406 -3.6035 4.4232 44 1 8.4411 -3.9944 6.0891 45 1 8.0216 -6.1104 6.1338 46 1 7.1021 -5.0572 7.2354 47 1 5.2762 -10.2785 9.2655 48 1 5.2812 -3.8658 3.3300 49 1 6.8816 -3.5198 2.6254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207419913.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:22 Heat of formation + Delta-G solvation = -109.058652 kcal Electronic energy + Delta-G solvation = -25797.101147 eV Core-core repulsion = 22077.244189 eV Total energy + Delta-G solvation = -3719.856958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.07882 -38.51057 -37.73165 -35.88861 -33.56818 -32.45053 -32.28552 -31.15061 -29.85768 -28.32498 -25.59969 -25.45959 -24.96280 -22.76012 -21.91226 -21.69417 -20.71870 -19.08752 -17.70455 -16.83522 -16.77702 -16.49989 -16.12385 -15.50298 -15.15564 -15.02184 -14.82217 -14.80885 -14.45806 -14.23879 -13.94272 -13.53871 -13.49164 -13.25814 -13.10761 -12.85988 -12.61223 -12.54708 -12.20737 -11.92327 -11.86016 -11.84250 -11.49778 -11.11745 -11.10014 -11.07714 -11.06660 -11.03406 -10.92128 -10.79532 -10.76210 -10.24629 -9.82649 -9.42732 -9.08398 -8.93579 -8.33800 -8.24510 -6.52240 -6.23327 -3.94083 2.88780 3.01898 3.20968 3.24203 3.28852 3.54861 3.79062 4.02456 4.18559 4.39472 4.57650 4.60233 4.61674 4.68239 4.82474 4.85956 4.88748 5.02849 5.06976 5.09082 5.11862 5.13754 5.22036 5.36555 5.37210 5.44776 5.46552 5.53629 5.58050 5.61859 5.65742 5.67411 5.69290 5.75389 5.84220 5.86687 5.95388 5.97494 6.04403 6.09583 6.12673 6.51135 6.82015 7.10511 7.26818 7.53117 7.58055 8.33476 8.52759 9.21933 10.84111 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016713 B = 0.002086 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.982791 B =13417.597060 C =14710.085131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.102 3.898 3 H 0.097 0.903 4 O -0.564 6.564 5 C -0.152 4.152 6 C -0.112 4.112 7 C 0.054 3.946 8 N -0.680 5.680 9 C 0.074 3.926 10 H 0.081 0.919 11 C -0.104 4.104 12 C -0.136 4.136 13 C 0.106 3.894 14 N -0.617 5.617 15 C 0.535 3.465 16 O -0.519 6.519 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.087 3.913 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.374 0.626 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.071 0.929 38 H 0.340 0.660 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.268 0.732 48 H 0.089 0.911 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.042 21.132 -14.673 25.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.043 3.957 3 H 0.115 0.885 4 O -0.370 6.370 5 C -0.190 4.190 6 C -0.150 4.150 7 C -0.075 4.075 8 N -0.310 5.310 9 C -0.037 4.037 10 H 0.100 0.900 11 C -0.143 4.143 12 C -0.174 4.174 13 C -0.017 4.017 14 N -0.353 5.353 15 C 0.323 3.677 16 O -0.393 6.393 17 C -0.300 4.300 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.038 4.038 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.222 0.778 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.089 0.911 38 H 0.159 0.841 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.107 0.893 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.455 21.498 -15.081 26.375 hybrid contribution 1.481 -1.327 1.391 2.427 sum -0.975 20.171 -13.690 24.397 Atomic orbital electron populations 1.22519 0.96560 1.02650 1.02729 1.21928 0.92632 0.96745 0.84431 0.88471 1.86583 1.77225 1.29133 1.44062 1.22292 0.96545 1.01426 0.98771 1.21482 0.94439 1.01561 0.97529 1.22061 0.87774 0.98810 0.98842 1.60654 1.05519 1.59618 1.05185 1.21972 0.97325 0.90799 0.93631 0.90036 1.21475 0.95486 1.00039 0.97263 1.21943 1.02010 0.95082 0.98413 1.21760 0.85677 0.94009 1.00253 1.48037 1.25023 1.29772 1.32496 1.20372 0.84590 0.79062 0.83706 1.90682 1.23047 1.62052 1.63567 1.23551 1.04365 1.04327 0.97790 1.85400 1.31985 1.27300 1.38844 1.22856 1.11443 1.16934 1.17084 0.90925 1.24998 0.95491 0.95444 0.97681 1.70019 1.21880 1.19112 1.39259 0.86162 0.80066 0.77937 0.81305 1.20263 1.20740 1.19680 1.22262 0.99483 0.93464 0.88544 0.91516 0.91893 0.92250 0.77843 0.91500 0.90875 0.91212 0.91446 0.94819 0.91054 0.84150 0.91031 0.91838 0.90388 0.91265 0.91503 0.89130 0.89245 0.89224 0.92181 0.89281 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.02 9.53 37.16 0.35 -0.67 16 2 C 0.10 0.65 3.59 -26.73 -0.10 0.56 16 3 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 4 O -0.56 -4.33 12.88 -35.23 -0.45 -4.78 16 5 C -0.15 -0.99 4.89 -26.73 -0.13 -1.12 16 6 C -0.11 -0.84 5.37 -26.73 -0.14 -0.98 16 7 C 0.05 0.48 5.48 -3.83 -0.02 0.46 16 8 N -0.68 -6.08 6.25 -106.60 -0.67 -6.75 16 9 C 0.07 0.75 2.62 -67.59 -0.18 0.57 16 10 H 0.08 0.97 7.80 -51.93 -0.41 0.57 16 11 C -0.10 -0.92 5.49 -26.68 -0.15 -1.06 16 12 C -0.14 -1.22 6.08 -26.61 -0.16 -1.38 16 13 C 0.11 1.16 6.34 -3.71 -0.02 1.14 16 14 N -0.62 -8.83 2.97 -172.77 -0.51 -9.34 16 15 C 0.53 10.28 7.72 -10.99 -0.08 10.20 16 16 O -0.52 -11.97 15.27 5.56 0.08 -11.88 16 17 C -0.15 -3.06 4.50 36.01 0.16 -2.89 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.21 9.50 30.94 0.29 -14.91 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 23 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.09 1.08 5.69 -3.71 -0.02 1.06 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.37 1.74 9.05 45.56 0.41 2.15 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.54 7.82 -51.93 -0.41 0.13 16 36 H 0.03 0.34 7.57 -51.93 -0.39 -0.06 16 37 H 0.07 0.66 8.06 -51.93 -0.42 0.25 16 38 H 0.34 2.77 8.42 -39.29 -0.33 2.44 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 45 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 46 H 0.09 1.69 7.69 -51.92 -0.40 1.29 16 47 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.09 1.30 6.49 -51.93 -0.34 0.97 16 49 H 0.06 0.68 8.05 -51.93 -0.42 0.26 16 LS Contribution 402.97 15.07 6.07 6.07 Total: -1.00 -34.38 402.97 -10.30 -44.68 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -8.03 Total: 2.05 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -0.29 Total: -7.05 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -0.45 Total: -41.50 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.37 Total: -16.67 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.38 -10.30 -44.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207419913.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.379 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds