Wall clock time and date at job start Tue Mar 31 2020 17:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 114.00172 * 2 1 4 4 H 1.09002 * 109.47372 * 30.00021 * 3 2 1 5 5 C 1.53006 * 109.47129 * 269.99900 * 3 2 1 6 6 C 1.52994 * 109.47180 * 149.99906 * 3 2 1 7 7 N 1.46902 * 109.47466 * 300.00049 * 6 3 2 8 8 C 1.46846 * 110.99617 * 294.20987 * 7 6 3 9 9 C 1.53040 * 109.51964 * 174.15808 * 8 7 6 10 10 C 1.53119 * 109.28089 * 59.17912 * 9 8 7 11 11 C 1.52993 * 109.52330 * 182.43958 * 10 9 8 12 12 N 1.46500 * 109.47361 * 294.68343 * 11 10 9 13 13 C 1.34773 * 120.00102 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00131 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99735 * 180.02562 * 13 12 11 16 16 S 1.81007 * 109.46979 * 179.97438 * 15 13 12 17 17 C 1.76197 * 99.99991 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00435 * 0.02562 * 17 16 15 19 19 C 1.38803 * 120.00171 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99831 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00265 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46937 * 0.02562 * 21 19 17 23 23 H 1.48489 * 109.47205 * 120.00229 * 21 19 17 24 24 H 1.48498 * 109.47065 * 240.00388 * 21 19 17 25 25 C 1.53124 * 109.15841 * 302.34776 * 10 9 8 26 26 C 1.46846 * 111.00204 * 169.99882 * 7 6 3 27 27 H 1.08993 * 109.46893 * 300.00204 * 1 2 3 28 28 H 1.09003 * 109.47124 * 60.00439 * 1 2 3 29 29 H 1.08997 * 109.47178 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47093 * 300.00292 * 5 3 2 31 31 H 1.09005 * 109.46845 * 60.00143 * 5 3 2 32 32 H 1.09002 * 109.47027 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47222 * 179.97438 * 6 3 2 34 34 H 1.09002 * 109.46934 * 60.00364 * 6 3 2 35 35 H 1.08996 * 109.46231 * 294.17554 * 8 7 6 36 36 H 1.09004 * 109.46418 * 54.14394 * 8 7 6 37 37 H 1.09004 * 109.50602 * 299.23671 * 9 8 7 38 38 H 1.09001 * 109.53370 * 179.14510 * 9 8 7 39 39 H 1.09003 * 109.56984 * 62.28008 * 10 9 8 40 40 H 1.09007 * 109.47317 * 54.68551 * 11 10 9 41 41 H 1.09000 * 109.47026 * 174.68099 * 11 10 9 42 42 H 0.97006 * 119.99803 * 0.02562 * 12 11 10 43 43 H 1.08999 * 109.47355 * 299.99546 * 15 13 12 44 44 H 1.09000 * 109.47482 * 60.00175 * 15 13 12 45 45 H 0.97002 * 120.00240 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.49853 * 297.70868 * 25 10 9 47 47 H 1.08994 * 109.53481 * 177.61659 * 25 10 9 48 48 H 1.09001 * 109.45990 * 305.85570 * 26 7 6 49 49 H 1.08999 * 109.46398 * 65.83493 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2178 1.7713 -1.4426 6 6 3.3589 1.2631 0.7212 7 7 3.1598 0.8158 2.1063 8 6 2.3800 1.7985 2.8696 9 6 2.0685 1.2365 4.2586 10 6 3.3805 0.9239 4.9835 11 6 3.0753 0.3051 6.3490 12 7 2.4003 1.2938 7.1934 13 6 2.0335 0.9695 8.4490 14 8 2.2618 -0.1410 8.8798 15 6 1.3387 1.9865 9.3174 16 16 0.9778 1.2544 10.9330 17 6 0.1911 2.6209 11.7193 18 1 0.0654 3.5517 11.1861 19 6 -0.2679 2.5010 13.0237 20 7 -0.1152 1.3665 13.6735 21 14 -1.1025 3.9495 13.8571 22 1 -1.1507 5.0998 12.9191 23 1 -2.4846 3.5689 14.2442 24 1 -0.3361 4.3314 15.0704 25 6 4.1952 -0.0643 4.1443 26 6 4.4451 0.5354 2.7587 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.8830 1.0773 -1.9564 31 1 1.2569 1.8014 -1.9564 32 1 2.6607 2.7672 -1.4425 33 1 3.8025 2.2588 0.7208 34 1 4.0242 0.5692 0.2074 35 1 2.9550 2.7189 2.9708 36 1 1.4477 2.0087 2.3454 37 1 1.4816 0.3234 4.1585 38 1 1.5027 1.9717 4.8307 39 1 3.9505 1.8431 5.1192 40 1 2.4290 -0.5629 6.2183 41 1 4.0064 -0.0035 6.8242 42 1 2.2174 2.1819 6.8487 43 1 1.9844 2.8549 9.4478 44 1 0.4073 2.2943 8.8422 45 1 -0.4356 1.2827 14.5852 46 1 3.6418 -0.9978 4.0424 47 1 5.1493 -0.2585 4.6342 48 1 5.0127 -0.1718 2.1538 49 1 5.0104 1.4618 2.8606 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222420982.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:03 Heat of formation + Delta-G solvation = -94.735113 kcal Electronic energy + Delta-G solvation = -25851.524925 eV Core-core repulsion = 22132.289082 eV Total energy + Delta-G solvation = -3719.235843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -39.99258 -39.05127 -38.13191 -35.57105 -33.40765 -32.41957 -31.75687 -31.16507 -29.53447 -27.51168 -26.80881 -25.50108 -24.81732 -23.71921 -22.17920 -21.14116 -20.40799 -19.84434 -17.84085 -17.11030 -16.69307 -16.16251 -15.92753 -15.72956 -15.40264 -15.15848 -14.93369 -14.79855 -14.42995 -14.34128 -14.00796 -13.55965 -13.42316 -13.33737 -12.98124 -12.91162 -12.78944 -12.68377 -12.53079 -12.14640 -12.09978 -11.75995 -11.67749 -11.47620 -11.13139 -11.06674 -11.00955 -10.91413 -10.80156 -10.67756 -10.42515 -9.89843 -9.79225 -9.35475 -9.06916 -8.82052 -8.60492 -8.21267 -6.48466 -6.20851 -3.91050 3.07195 3.14937 3.21912 3.28981 3.34093 3.40833 3.49387 3.76177 4.21197 4.35508 4.42098 4.47350 4.61661 4.67379 4.75252 4.91453 4.95503 4.99832 5.02500 5.08441 5.10910 5.14276 5.18200 5.20097 5.25499 5.26505 5.35140 5.42059 5.47573 5.50576 5.53831 5.59604 5.65758 5.69545 5.72632 5.85527 5.89136 5.92661 5.98321 6.15631 6.18783 6.66932 6.72712 6.76567 6.94977 7.60690 7.75748 8.36294 8.66519 9.24508 10.86633 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.001866 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.559688 B =14998.942715 C =15605.307317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.367 6.367 3 C 0.088 3.912 4 H 0.059 0.941 5 C -0.176 4.176 6 C 0.058 3.942 7 N -0.528 5.528 8 C 0.054 3.946 9 C -0.112 4.112 10 C -0.099 4.099 11 C 0.127 3.873 12 N -0.738 5.738 13 C 0.531 3.469 14 O -0.518 6.518 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.108 4.108 26 C 0.059 3.941 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.396 0.604 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.717 2.589 -31.094 31.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C 0.030 3.970 4 H 0.077 0.923 5 C -0.234 4.234 6 C -0.070 4.070 7 N -0.253 5.253 8 C -0.074 4.074 9 C -0.149 4.149 10 C -0.118 4.118 11 C 0.003 3.997 12 N -0.393 5.393 13 C 0.317 3.683 14 O -0.393 6.393 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.147 4.147 26 C -0.069 4.069 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.230 0.770 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.925 0.012 -30.212 30.995 hybrid contribution -0.673 3.698 -0.156 3.762 sum 6.251 3.710 -30.368 31.226 Atomic orbital electron populations 1.22745 0.81512 1.02695 0.99461 1.87989 1.19053 1.26642 1.94875 1.22134 0.94658 0.85509 0.94745 0.92255 1.22279 1.02575 1.01579 0.96932 1.22209 0.96271 0.99296 0.89222 1.61844 1.18060 1.44252 1.01125 1.22144 0.97861 0.92707 0.94652 1.21650 0.97068 1.02121 0.94102 1.21439 0.96975 0.99300 0.94063 1.21301 0.97557 0.91844 0.88976 1.46019 1.62559 1.16451 1.14269 1.20290 0.78121 0.88768 0.81165 1.90702 1.53652 1.22351 1.72552 1.23530 1.02461 1.01218 1.03188 1.85408 1.76312 1.19542 1.02156 1.22913 1.44255 0.99719 1.01423 0.90902 1.24999 0.95657 0.96747 0.96247 1.70029 1.44136 1.24368 1.11729 0.86115 0.78952 0.81268 0.79144 1.19641 1.20575 1.20572 1.21550 1.00221 0.99124 0.93784 1.22062 0.89923 0.99380 0.95492 0.94106 0.94668 0.89723 0.91602 0.92240 0.91709 0.93706 0.89916 0.95041 0.90997 0.90563 0.91349 0.90903 0.91484 0.91673 0.77007 0.89321 0.89301 0.92245 0.90450 0.91056 0.90565 0.95054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.32 16 2 O -0.37 -3.34 10.21 -35.23 -0.36 -3.70 16 3 C 0.09 0.61 2.60 -26.73 -0.07 0.54 16 4 H 0.06 0.39 6.07 -51.93 -0.32 0.08 16 5 C -0.18 -0.94 9.53 37.16 0.35 -0.59 16 6 C 0.06 0.40 4.65 -3.83 -0.02 0.38 16 7 N -0.53 -4.27 4.52 -234.68 -1.06 -5.33 16 8 C 0.05 0.41 5.29 -3.83 -0.02 0.39 16 9 C -0.11 -0.94 5.22 -26.65 -0.14 -1.08 16 10 C -0.10 -0.85 2.29 -90.50 -0.21 -1.06 16 11 C 0.13 1.50 5.07 -4.05 -0.02 1.48 16 12 N -0.74 -9.93 5.31 -60.30 -0.32 -10.25 16 13 C 0.53 10.05 7.85 -10.99 -0.09 9.97 16 14 O -0.52 -12.03 15.86 5.56 0.09 -11.94 16 15 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 17 C -0.53 -15.33 9.50 30.94 0.29 -15.04 16 18 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 21 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.11 -0.86 5.38 -26.65 -0.14 -1.01 16 26 C 0.06 0.44 5.46 -3.84 -0.02 0.42 16 27 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 28 H 0.03 0.20 7.87 -51.93 -0.41 -0.21 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.04 0.27 8.12 -51.93 -0.42 -0.16 16 34 H 0.08 0.58 7.99 -51.93 -0.41 0.16 16 35 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.07 0.53 6.21 -51.93 -0.32 0.21 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.55 7.27 -51.93 -0.38 0.17 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.40 4.18 7.69 -40.82 -0.31 3.86 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.53 8.02 -51.93 -0.42 0.11 16 49 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 403.04 15.07 6.07 6.07 Total: -1.00 -34.88 403.04 -9.80 -44.68 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -8.86 Total: -1.37 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 1.14 Total: -5.18 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -0.65 Total: -41.15 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.27 Total: -15.64 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.88 -9.80 -44.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222420982.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.055 kcal (2) G-P(sol) polarization free energy of solvation -34.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds