Wall clock time and date at job start Tue Mar 31 2020 17:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00138 * 2 1 4 4 C 1.52998 * 109.47190 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47441 * 183.92039 * 4 3 2 6 6 C 1.53001 * 109.47282 * 303.92219 * 4 3 2 7 7 N 1.46898 * 109.46727 * 63.92229 * 4 3 2 8 8 C 1.46850 * 110.99907 * 185.83108 * 7 4 3 9 9 C 1.53036 * 109.52664 * 174.16086 * 8 7 4 10 10 C 1.53122 * 109.27665 * 59.17879 * 9 8 7 11 11 C 1.52995 * 109.52264 * 182.44476 * 10 9 8 12 12 N 1.46507 * 109.47020 * 294.67986 * 11 10 9 13 13 C 1.34775 * 120.00080 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99743 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00126 * 180.02562 * 13 12 11 16 16 S 1.80989 * 109.47211 * 179.97438 * 15 13 12 17 17 C 1.76203 * 99.99954 * 179.97438 * 16 15 13 18 18 H 1.07998 * 119.99727 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99942 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00077 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00002 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46984 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46936 * 119.99826 * 21 19 17 24 24 H 1.48491 * 109.47222 * 240.00316 * 21 19 17 25 25 C 1.53120 * 109.15933 * 302.34803 * 10 9 8 26 26 C 1.46847 * 110.99987 * 61.62130 * 7 4 3 27 27 H 1.09003 * 109.46957 * 59.99678 * 1 2 3 28 28 H 1.08996 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46911 * 299.99609 * 1 2 3 30 30 H 1.09004 * 109.46405 * 60.00144 * 3 2 1 31 31 H 1.08999 * 109.47499 * 300.00906 * 3 2 1 32 32 H 1.09004 * 109.46843 * 59.99890 * 6 4 3 33 33 H 1.08998 * 109.47331 * 179.97438 * 6 4 3 34 34 H 1.08995 * 109.47644 * 300.00295 * 6 4 3 35 35 H 1.08998 * 109.46118 * 294.17693 * 8 7 4 36 36 H 1.08997 * 109.46402 * 54.13990 * 8 7 4 37 37 H 1.08998 * 109.50226 * 299.23871 * 9 8 7 38 38 H 1.09001 * 109.50423 * 179.11849 * 9 8 7 39 39 H 1.08995 * 109.52749 * 62.25023 * 10 9 8 40 40 H 1.08997 * 109.47399 * 54.67572 * 11 10 9 41 41 H 1.09005 * 109.47199 * 174.68300 * 11 10 9 42 42 H 0.96998 * 119.99433 * 359.97438 * 12 11 10 43 43 H 1.09003 * 109.46204 * 299.99798 * 15 13 12 44 44 H 1.08995 * 109.47143 * 59.99401 * 15 13 12 45 45 H 0.96998 * 119.99943 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.50122 * 297.71469 * 25 10 9 47 47 H 1.08997 * 109.50372 * 177.59918 * 25 10 9 48 48 H 1.08997 * 109.46043 * 305.85024 * 26 7 4 49 49 H 1.08990 * 109.46266 * 65.82333 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9787 2.1779 0.0709 6 6 3.9799 0.3421 1.1980 7 7 3.9760 0.5388 -1.2431 8 6 5.4213 0.2804 -1.2186 9 6 5.8190 -0.5201 -2.4608 10 6 5.4447 0.2742 -3.7152 11 6 5.7841 -0.5472 -4.9606 12 7 7.2354 -0.7296 -5.0447 13 6 7.7688 -1.4263 -6.0677 14 8 7.0474 -1.9026 -6.9183 15 6 9.2616 -1.6144 -6.1539 16 16 9.6631 -2.5860 -7.6272 17 6 11.4181 -2.6500 -7.4825 18 1 11.9093 -2.1661 -6.6513 19 6 12.1689 -3.3231 -8.4363 20 7 11.5701 -3.9133 -9.4491 21 14 14.0295 -3.3904 -8.2833 22 1 14.4529 -2.6538 -7.0654 23 1 14.4669 -4.8059 -8.1822 24 1 14.6474 -2.7655 -9.4802 25 6 3.9429 0.5717 -3.6922 26 6 3.5996 1.3407 -2.4143 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8463 0.8901 31 1 1.6886 1.8465 -0.8899 32 1 3.5367 -0.6513 1.1276 33 1 5.0664 0.2556 1.1982 34 1 3.6530 0.8211 2.1208 35 1 5.9596 1.2282 -1.2097 36 1 5.6735 -0.2885 -0.3237 37 1 5.2916 -1.4740 -2.4632 38 1 6.8943 -0.6982 -2.4501 39 1 6.0014 1.2111 -3.7328 40 1 5.2987 -1.5210 -4.8970 41 1 5.4318 -0.0228 -5.8489 42 1 7.8123 -0.3483 -4.3645 43 1 9.7473 -0.6407 -6.2168 44 1 9.6135 -2.1394 -5.2659 45 1 12.0948 -4.3840 -10.1154 46 1 3.3860 -0.3650 -3.7139 47 1 3.6778 1.1736 -4.5614 48 1 2.5287 1.5416 -2.3879 49 1 4.1464 2.2834 -2.3998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222425371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:53 Heat of formation + Delta-G solvation = -88.801192 kcal Electronic energy + Delta-G solvation = -25900.408025 eV Core-core repulsion = 22181.429496 eV Total energy + Delta-G solvation = -3718.978529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.09665 -39.05025 -37.96243 -35.86236 -33.61752 -32.40859 -31.31515 -31.07522 -29.21460 -27.74305 -26.39867 -25.93826 -25.41002 -23.09101 -22.60194 -20.61714 -20.37202 -19.83555 -17.84288 -17.23560 -16.70686 -16.20855 -15.86703 -15.83334 -15.57589 -15.16284 -14.97842 -14.78827 -14.43331 -14.19261 -13.97855 -13.80821 -13.55329 -13.23873 -13.05135 -12.85913 -12.71575 -12.54996 -12.19730 -12.07837 -11.91792 -11.68353 -11.50987 -11.43883 -11.34575 -11.05712 -10.99849 -10.88407 -10.75786 -10.56242 -10.42239 -9.95503 -9.78097 -9.33889 -9.05849 -8.80325 -8.56948 -8.20121 -6.47310 -6.19832 -3.89980 3.08542 3.16441 3.22864 3.29918 3.35175 3.36888 3.52792 3.77632 4.22269 4.36564 4.44381 4.50668 4.57903 4.67589 4.84600 4.90495 4.94446 4.97968 5.02324 5.07437 5.12323 5.15313 5.18542 5.22859 5.29511 5.31663 5.33392 5.42519 5.45751 5.49764 5.62372 5.64556 5.68933 5.75655 5.89120 5.89644 5.94485 5.98208 6.02034 6.17159 6.21690 6.68614 6.72632 6.81412 6.90365 7.61777 7.77545 8.37404 8.68066 9.25567 10.87668 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.030076 B = 0.001793 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.745790 B =15615.603218 C =16101.933338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.369 6.369 3 C 0.068 3.932 4 C 0.083 3.917 5 H 0.050 0.950 6 C -0.145 4.145 7 N -0.523 5.523 8 C 0.052 3.948 9 C -0.112 4.112 10 C -0.099 4.099 11 C 0.128 3.872 12 N -0.738 5.738 13 C 0.531 3.469 14 O -0.519 6.519 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.107 4.107 26 C 0.055 3.945 27 H 0.038 0.962 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.030 0.970 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.396 0.604 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.589 14.016 22.841 33.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.287 6.287 3 C -0.010 4.010 4 C -0.025 4.025 5 H 0.068 0.932 6 C -0.203 4.203 7 N -0.249 5.249 8 C -0.075 4.075 9 C -0.150 4.150 10 C -0.118 4.118 11 C 0.003 3.997 12 N -0.393 5.393 13 C 0.317 3.683 14 O -0.393 6.393 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.145 4.145 26 C -0.073 4.073 27 H 0.057 0.943 28 H 0.104 0.896 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.230 0.770 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.094 0.906 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -20.914 12.492 21.215 32.304 hybrid contribution 2.471 1.811 1.445 3.387 sum -18.444 14.303 22.660 32.531 Atomic orbital electron populations 1.22735 0.81670 1.02759 0.99526 1.88012 1.18776 1.26740 1.95187 1.22606 0.93112 0.85458 0.99786 1.21657 0.93355 0.96431 0.91067 0.93178 1.21837 1.01102 1.01616 0.95703 1.61908 1.14808 1.47014 1.01135 1.22189 0.87153 0.98842 0.99325 1.21661 1.01023 0.99487 0.92794 1.21442 0.96986 0.98848 0.94513 1.21299 0.81223 1.00046 0.97092 1.46017 1.07586 1.57428 1.28241 1.20291 0.90255 0.77173 0.80621 1.90701 1.62253 1.47410 1.38936 1.23529 0.93885 1.05633 1.07350 1.85403 1.06752 1.66498 1.24784 1.22916 0.91543 1.40257 1.13580 0.90894 1.24996 0.99502 0.94628 0.94504 1.70032 1.35942 1.32624 1.11690 0.86115 0.83168 0.78006 0.78192 1.19639 1.20573 1.20582 1.21533 0.95059 1.01479 0.96476 1.22125 1.00603 0.94159 0.90387 0.94325 0.89627 0.94519 0.93240 0.93223 0.90601 0.92385 0.92499 0.95170 0.90036 0.90532 0.91311 0.90951 0.91482 0.91745 0.76986 0.89328 0.89276 0.92255 0.90460 0.91203 0.90636 0.95159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.17 9.80 -35.23 -0.35 -3.52 16 3 C 0.07 0.45 5.37 37.16 0.20 0.65 16 4 C 0.08 0.58 2.47 -67.71 -0.17 0.42 16 5 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 6 C -0.15 -0.98 8.60 37.16 0.32 -0.66 16 7 N -0.52 -4.27 4.46 -226.70 -1.01 -5.28 16 8 C 0.05 0.41 5.09 -3.83 -0.02 0.39 16 9 C -0.11 -0.96 5.22 -26.65 -0.14 -1.10 16 10 C -0.10 -0.87 2.29 -90.50 -0.21 -1.07 16 11 C 0.13 1.53 5.07 -4.04 -0.02 1.51 16 12 N -0.74 -10.04 5.31 -60.29 -0.32 -10.36 16 13 C 0.53 10.13 7.85 -10.98 -0.09 10.04 16 14 O -0.52 -12.10 15.86 5.56 0.09 -12.01 16 15 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.39 9.50 30.94 0.29 -15.09 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 21 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C -0.11 -0.87 5.38 -26.65 -0.14 -1.02 16 26 C 0.05 0.42 5.25 -3.83 -0.02 0.39 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.31 6.13 -51.93 -0.32 -0.01 16 32 H 0.07 0.64 7.58 -51.93 -0.39 0.25 16 33 H 0.06 0.37 6.20 -51.93 -0.32 0.04 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.62 5.87 -51.93 -0.30 0.31 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.56 7.27 -51.93 -0.38 0.19 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.40 4.25 7.69 -40.82 -0.31 3.93 16 43 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.54 5.98 -51.93 -0.31 0.23 16 49 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 397.95 15.07 6.00 6.00 Total: -1.00 -34.94 397.95 -9.49 -44.44 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -8.65 Total: -1.08 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 1.25 Total: -5.18 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.60 Total: -41.29 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.26 Total: -15.53 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.94 -9.49 -44.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222425371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.362 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds