Wall clock time and date at job start Tue Mar 31 2020 17:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00138 * 2 1 4 4 C 1.52998 * 109.47190 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47441 * 183.92039 * 4 3 2 6 6 C 1.53001 * 109.47282 * 303.92219 * 4 3 2 7 7 N 1.46898 * 109.46727 * 63.92229 * 4 3 2 8 8 C 1.46850 * 110.99907 * 185.83108 * 7 4 3 9 9 C 1.53036 * 109.52664 * 174.16086 * 8 7 4 10 10 C 1.53122 * 109.27665 * 59.17879 * 9 8 7 11 11 C 1.52995 * 109.52264 * 182.44476 * 10 9 8 12 12 N 1.46507 * 109.47020 * 294.67986 * 11 10 9 13 13 C 1.34775 * 120.00080 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99743 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00126 * 180.02562 * 13 12 11 16 16 S 1.80989 * 109.47211 * 179.97438 * 15 13 12 17 17 C 1.76203 * 99.99954 * 179.97438 * 16 15 13 18 18 H 1.07998 * 119.99727 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99942 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00077 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00002 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46984 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46936 * 119.99826 * 21 19 17 24 24 H 1.48491 * 109.47222 * 240.00316 * 21 19 17 25 25 C 1.53120 * 109.15933 * 302.34803 * 10 9 8 26 26 C 1.46847 * 110.99987 * 61.62130 * 7 4 3 27 27 H 1.09003 * 109.46957 * 59.99678 * 1 2 3 28 28 H 1.08996 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46911 * 299.99609 * 1 2 3 30 30 H 1.09004 * 109.46405 * 60.00144 * 3 2 1 31 31 H 1.08999 * 109.47499 * 300.00906 * 3 2 1 32 32 H 1.09004 * 109.46843 * 59.99890 * 6 4 3 33 33 H 1.08998 * 109.47331 * 179.97438 * 6 4 3 34 34 H 1.08995 * 109.47644 * 300.00295 * 6 4 3 35 35 H 1.08998 * 109.46118 * 294.17693 * 8 7 4 36 36 H 1.08997 * 109.46402 * 54.13990 * 8 7 4 37 37 H 1.08998 * 109.50226 * 299.23871 * 9 8 7 38 38 H 1.09001 * 109.50423 * 179.11849 * 9 8 7 39 39 H 1.08995 * 109.52749 * 62.25023 * 10 9 8 40 40 H 1.08997 * 109.47399 * 54.67572 * 11 10 9 41 41 H 1.09005 * 109.47199 * 174.68300 * 11 10 9 42 42 H 0.96998 * 119.99433 * 359.97438 * 12 11 10 43 43 H 1.09003 * 109.46204 * 299.99798 * 15 13 12 44 44 H 1.08995 * 109.47143 * 59.99401 * 15 13 12 45 45 H 0.96998 * 119.99943 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.50122 * 297.71469 * 25 10 9 47 47 H 1.08997 * 109.50372 * 177.59918 * 25 10 9 48 48 H 1.08997 * 109.46043 * 305.85024 * 26 7 4 49 49 H 1.08990 * 109.46266 * 65.82333 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9787 2.1779 0.0709 6 6 3.9799 0.3421 1.1980 7 7 3.9760 0.5388 -1.2431 8 6 5.4213 0.2804 -1.2186 9 6 5.8190 -0.5201 -2.4608 10 6 5.4447 0.2742 -3.7152 11 6 5.7841 -0.5472 -4.9606 12 7 7.2354 -0.7296 -5.0447 13 6 7.7688 -1.4263 -6.0677 14 8 7.0474 -1.9026 -6.9183 15 6 9.2616 -1.6144 -6.1539 16 16 9.6631 -2.5860 -7.6272 17 6 11.4181 -2.6500 -7.4825 18 1 11.9093 -2.1661 -6.6513 19 6 12.1689 -3.3231 -8.4363 20 7 11.5701 -3.9133 -9.4491 21 14 14.0295 -3.3904 -8.2833 22 1 14.4529 -2.6538 -7.0654 23 1 14.4669 -4.8059 -8.1822 24 1 14.6474 -2.7655 -9.4802 25 6 3.9429 0.5717 -3.6922 26 6 3.5996 1.3407 -2.4143 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8463 0.8901 31 1 1.6886 1.8465 -0.8899 32 1 3.5367 -0.6513 1.1276 33 1 5.0664 0.2556 1.1982 34 1 3.6530 0.8211 2.1208 35 1 5.9596 1.2282 -1.2097 36 1 5.6735 -0.2885 -0.3237 37 1 5.2916 -1.4740 -2.4632 38 1 6.8943 -0.6982 -2.4501 39 1 6.0014 1.2111 -3.7328 40 1 5.2987 -1.5210 -4.8970 41 1 5.4318 -0.0228 -5.8489 42 1 7.8123 -0.3483 -4.3645 43 1 9.7473 -0.6407 -6.2168 44 1 9.6135 -2.1394 -5.2659 45 1 12.0948 -4.3840 -10.1154 46 1 3.3860 -0.3650 -3.7139 47 1 3.6778 1.1736 -4.5614 48 1 2.5287 1.5416 -2.3879 49 1 4.1464 2.2834 -2.3998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222425371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:50 Heat of formation + Delta-G solvation = -113.929363 kcal Electronic energy + Delta-G solvation = -25901.497664 eV Core-core repulsion = 22181.429496 eV Total energy + Delta-G solvation = -3720.068168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.93924 -40.25176 -38.62185 -36.75487 -34.67699 -34.56978 -32.04883 -31.90665 -30.55609 -28.23331 -27.75781 -27.14661 -26.49482 -23.73795 -23.41037 -21.74012 -21.20347 -20.61082 -19.81115 -17.97024 -17.62117 -17.37584 -16.99471 -16.87486 -16.68510 -16.36604 -16.01891 -15.82704 -15.56731 -15.35329 -14.81107 -14.77122 -14.57248 -14.34697 -14.19673 -13.85591 -13.66621 -13.52849 -13.17242 -13.15554 -12.90546 -12.77197 -12.61333 -12.58680 -12.43122 -12.08716 -12.06721 -11.93467 -11.71578 -11.62112 -11.28759 -11.15529 -11.07074 -10.89625 -10.45927 -10.26547 -10.09401 -9.13038 -8.66403 -8.34371 -6.12508 1.27796 1.41914 1.47912 1.59050 1.62880 2.26717 2.32422 2.85427 2.99818 3.02608 3.32970 3.67877 3.76456 3.85230 3.97328 4.03425 4.07929 4.28900 4.31366 4.33306 4.40912 4.45799 4.50930 4.51349 4.54415 4.58597 4.59922 4.61486 4.74811 4.75569 4.84550 4.88310 4.90667 4.94919 4.95208 5.05785 5.10541 5.23911 5.26298 5.40377 5.42595 5.44831 5.53491 6.18883 6.20545 6.24333 6.41135 6.52239 7.06962 7.26194 8.75177 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.030076 B = 0.001793 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.745790 B =15615.603218 C =16101.933338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.065 3.935 4 C 0.081 3.919 5 H 0.062 0.938 6 C -0.140 4.140 7 N -0.539 5.539 8 C 0.056 3.944 9 C -0.110 4.110 10 C -0.085 4.085 11 C 0.129 3.871 12 N -0.710 5.710 13 C 0.532 3.468 14 O -0.569 6.569 15 C -0.129 4.129 16 S -0.154 6.154 17 C -0.545 4.545 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.105 4.105 26 C 0.059 3.941 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.415 0.585 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.271 0.729 46 H 0.062 0.938 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.681 16.018 25.099 35.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.011 4.011 4 C -0.027 4.027 5 H 0.080 0.920 6 C -0.198 4.198 7 N -0.265 5.265 8 C -0.072 4.072 9 C -0.148 4.148 10 C -0.104 4.104 11 C 0.005 3.995 12 N -0.364 5.364 13 C 0.318 3.682 14 O -0.447 6.447 15 C -0.280 4.280 16 S 0.073 5.927 17 C -0.693 4.693 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.180 1.180 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.143 4.143 26 C -0.069 4.069 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.252 0.748 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -20.019 14.533 23.534 34.145 hybrid contribution 2.058 1.230 0.830 2.538 sum -17.961 15.764 24.365 34.128 Atomic orbital electron populations 1.22834 0.80603 1.03180 1.00359 1.87973 1.20124 1.28012 1.95383 1.22700 0.92875 0.84928 1.00644 1.21731 0.93689 0.96828 0.90444 0.91981 1.21785 1.01160 1.00550 0.96282 1.61892 1.14994 1.47772 1.01825 1.22142 0.87219 0.99065 0.98729 1.21635 1.01170 0.98773 0.93205 1.21352 0.97661 0.98682 0.92714 1.21406 0.79606 0.99872 0.98622 1.45759 1.08700 1.55229 1.26742 1.20087 0.89442 0.77471 0.81219 1.90691 1.62959 1.49883 1.41175 1.23371 0.95289 1.05360 1.04012 1.85601 1.07910 1.68963 1.30181 1.23246 0.91528 1.40477 1.14079 0.89846 1.26147 1.05351 0.93873 0.93866 1.70195 1.38258 1.33613 1.12759 0.84888 0.75811 0.78326 0.78800 1.17977 1.19955 1.19918 1.21510 0.94250 1.01103 0.97484 1.22087 1.00994 0.94152 0.89649 0.93837 0.89523 0.93279 0.91848 0.92819 0.92691 0.92014 0.91389 0.94216 0.89912 0.92365 0.90662 0.89450 0.92974 0.92408 0.74784 0.87153 0.87200 0.92002 0.91958 0.90394 0.90280 0.94254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.40 -6.47 9.80 -148.98 -1.46 -7.93 16 3 C 0.07 0.76 5.37 71.98 0.39 1.15 16 4 C 0.08 0.98 2.47 44.92 0.11 1.09 16 5 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 6 C -0.14 -1.69 8.60 71.98 0.62 -1.07 16 7 N -0.54 -7.90 4.46 -871.15 -3.88 -11.79 16 8 C 0.06 0.76 5.09 86.32 0.44 1.20 16 9 C -0.11 -1.71 5.22 30.65 0.16 -1.55 16 10 C -0.09 -1.33 2.29 -10.71 -0.02 -1.36 16 11 C 0.13 2.96 5.07 86.38 0.44 3.40 16 12 N -0.71 -18.15 5.31 -463.05 -2.46 -20.61 16 13 C 0.53 20.02 7.85 87.66 0.69 20.71 16 14 O -0.57 -27.12 15.86 -3.04 -0.05 -27.16 16 15 C -0.13 -5.16 6.16 71.24 0.44 -4.72 16 16 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 17 C -0.55 -31.37 9.50 67.95 0.65 -30.73 16 18 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 19 C 0.01 0.70 5.49 84.86 0.47 1.17 16 20 N -0.91 -56.46 13.22 21.65 0.29 -56.17 16 21 Si 1.00 43.81 29.55 68.60 2.03 45.84 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 C -0.11 -1.57 5.38 30.65 0.16 -1.40 16 26 C 0.06 0.77 5.25 86.33 0.45 1.22 16 27 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.05 0.57 6.13 -2.39 -0.01 0.55 16 32 H 0.05 0.90 7.58 -2.39 -0.02 0.88 16 33 H 0.06 0.68 6.20 -2.39 -0.01 0.66 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.08 1.11 5.87 -2.39 -0.01 1.10 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.06 7.27 -2.39 -0.02 1.04 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.41 7.66 7.69 -92.71 -0.71 6.94 16 43 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 44 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 45 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 46 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.08 0.99 5.98 -2.39 -0.01 0.98 16 49 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -77.73 397.95 -0.25 -77.99 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.21 Total: 19.01 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 6.23 Total: -9.36 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -6.06 Total: -88.56 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.51 Total: -35.10 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -77.73 -0.25 -77.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222425371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.940 kcal (2) G-P(sol) polarization free energy of solvation -77.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds