Wall clock time and date at job start Tue Mar 31 2020 17:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00047 * 2 1 4 4 C 1.52999 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46826 * 176.06375 * 4 3 2 6 6 C 1.52992 * 109.47172 * 56.06737 * 4 3 2 7 7 N 1.46897 * 109.46764 * 296.06348 * 4 3 2 8 8 C 1.46853 * 110.99721 * 172.35077 * 7 4 3 9 9 C 1.53037 * 109.52178 * 185.84270 * 8 7 4 10 10 C 1.53123 * 109.27609 * 300.81584 * 9 8 7 11 11 C 1.52996 * 109.52125 * 177.56290 * 10 9 8 12 12 N 1.46501 * 109.47440 * 65.31488 * 11 10 9 13 13 C 1.34778 * 120.00239 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00029 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00098 * 180.02562 * 13 12 11 16 16 S 1.81001 * 109.46948 * 179.97438 * 15 13 12 17 17 C 1.76205 * 99.99703 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99868 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99920 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99977 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99809 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46959 * 90.00655 * 21 19 17 23 23 H 1.48497 * 109.47089 * 210.00342 * 21 19 17 24 24 H 1.48500 * 109.47456 * 330.00612 * 21 19 17 25 25 C 1.53119 * 109.16136 * 57.65647 * 10 9 8 26 26 C 1.46848 * 111.00102 * 296.55320 * 7 4 3 27 27 H 1.08998 * 109.47097 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47450 * 300.00155 * 1 2 3 29 29 H 1.09001 * 109.47185 * 60.00348 * 1 2 3 30 30 H 1.09007 * 109.46987 * 300.00058 * 3 2 1 31 31 H 1.08994 * 109.47261 * 59.99334 * 3 2 1 32 32 H 1.09002 * 109.47783 * 60.00322 * 6 4 3 33 33 H 1.09002 * 109.47319 * 180.02562 * 6 4 3 34 34 H 1.09004 * 109.47446 * 299.99582 * 6 4 3 35 35 H 1.09000 * 109.45940 * 305.85243 * 8 7 4 36 36 H 1.09000 * 109.46565 * 65.82121 * 8 7 4 37 37 H 1.08998 * 109.50199 * 180.88001 * 9 8 7 38 38 H 1.08999 * 109.50382 * 60.75555 * 9 8 7 39 39 H 1.08999 * 109.52290 * 297.75274 * 10 9 8 40 40 H 1.08999 * 109.47234 * 185.31953 * 11 10 9 41 41 H 1.09002 * 109.47570 * 305.31396 * 11 10 9 42 42 H 0.97000 * 119.99535 * 0.02562 * 12 11 10 43 43 H 1.08999 * 109.46502 * 300.00118 * 15 13 12 44 44 H 1.08998 * 109.47166 * 60.00039 * 15 13 12 45 45 H 0.96998 * 119.99831 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.50415 * 182.40515 * 25 10 9 47 47 H 1.09005 * 109.49940 * 62.28492 * 25 10 9 48 48 H 1.08993 * 109.46401 * 294.18189 * 26 7 4 49 49 H 1.08999 * 109.45986 * 54.14876 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1780 -0.0712 6 6 3.9798 0.3419 -1.1978 7 7 3.9759 0.5391 1.2432 8 6 5.4134 0.2417 1.2012 9 6 5.8069 -0.5574 2.4457 10 6 5.4718 0.2586 3.6973 11 6 5.8067 -0.5596 4.9459 12 7 7.2535 -0.7804 5.0117 13 6 7.7825 -1.4815 6.0340 14 8 7.0608 -1.9292 6.8999 15 6 9.2708 -1.7081 6.1019 16 16 9.6670 -2.6750 7.5799 17 6 11.4173 -2.7881 7.4113 18 1 11.9095 -2.3263 6.5681 19 6 12.1633 -3.4715 8.3615 20 7 13.4710 -3.5555 8.2358 21 14 11.3118 -4.2707 9.8194 22 1 10.9386 -5.6652 9.4711 23 1 12.2316 -4.2809 10.9852 24 1 10.0884 -3.5014 10.1609 25 6 3.9784 0.5964 3.6921 26 6 3.6380 1.3621 2.4115 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 3.6530 0.8208 -2.1207 33 1 5.0663 0.2554 -1.1980 34 1 3.5367 -0.6516 -1.1273 35 1 5.6375 -0.3425 0.3087 36 1 5.9767 1.1745 1.1755 37 1 6.8767 -0.7646 2.4219 38 1 5.2540 -1.4966 2.4649 39 1 6.0537 1.1803 3.6977 40 1 5.4812 -0.0175 5.8337 41 1 5.2944 -1.5206 4.8989 42 1 7.8308 -0.4214 4.3197 43 1 9.5965 -2.2504 5.2143 44 1 9.7829 -0.7470 6.1489 45 1 13.9923 -4.0328 8.9001 46 1 3.7419 1.2136 4.5589 47 1 3.3968 -0.3247 3.7309 48 1 4.2095 2.2895 2.3800 49 1 2.5725 1.5916 2.3980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222425372.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:57 Heat of formation + Delta-G solvation = -113.408243 kcal Electronic energy + Delta-G solvation = -25946.086799 eV Core-core repulsion = 22226.041229 eV Total energy + Delta-G solvation = -3720.045571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.95907 -40.27138 -38.62587 -36.76887 -34.71104 -34.64052 -32.07612 -31.90563 -30.60858 -28.23501 -27.89725 -27.20976 -26.49861 -23.74154 -23.42320 -21.77205 -21.20747 -20.61680 -19.85976 -18.00143 -17.64766 -17.40454 -17.12540 -16.93553 -16.72186 -16.36647 -16.03337 -15.71696 -15.57931 -15.37905 -14.96377 -14.78860 -14.75308 -14.40077 -14.25404 -13.90520 -13.66867 -13.53243 -13.34420 -13.21122 -12.99760 -12.79668 -12.63834 -12.61586 -12.42707 -12.08825 -12.06858 -11.93867 -11.85475 -11.62430 -11.29843 -11.16827 -11.07499 -10.93798 -10.53097 -10.46209 -10.11395 -9.13407 -8.99303 -8.51264 -6.22018 0.99601 1.31756 1.47370 1.56628 1.57961 2.23707 2.28279 2.72801 2.85524 2.86964 3.02330 3.67446 3.76451 3.83600 3.90835 4.01040 4.07490 4.23491 4.30111 4.33195 4.40593 4.45718 4.47347 4.50777 4.54346 4.58567 4.59887 4.61490 4.74781 4.75178 4.84046 4.88579 4.90609 4.94652 4.95006 5.05596 5.10036 5.24003 5.26115 5.38820 5.43592 5.52778 5.71090 6.11687 6.18475 6.24147 6.41058 6.48114 6.94016 7.20772 8.61042 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.031471 B = 0.001837 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.499984 B =15235.819306 C =15623.567591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.066 3.934 4 C 0.081 3.919 5 H 0.062 0.938 6 C -0.141 4.141 7 N -0.538 5.538 8 C 0.055 3.945 9 C -0.110 4.110 10 C -0.086 4.086 11 C 0.129 3.871 12 N -0.710 5.710 13 C 0.534 3.466 14 O -0.565 6.565 15 C -0.111 4.111 16 S -0.178 6.178 17 C -0.529 4.529 18 H 0.063 0.937 19 C 0.046 3.954 20 N -0.916 5.916 21 Si 0.914 3.086 22 H -0.263 1.263 23 H -0.259 1.259 24 H -0.237 1.237 25 C -0.105 4.105 26 C 0.058 3.942 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.415 0.585 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.277 0.723 46 H 0.078 0.922 47 H 0.063 0.937 48 H 0.039 0.961 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.354 14.844 -21.297 36.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.011 4.011 4 C -0.027 4.027 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.264 5.264 8 C -0.072 4.072 9 C -0.148 4.148 10 C -0.105 4.105 11 C 0.006 3.994 12 N -0.364 5.364 13 C 0.319 3.681 14 O -0.444 6.444 15 C -0.262 4.262 16 S 0.049 5.951 17 C -0.676 4.676 18 H 0.081 0.919 19 C -0.160 4.160 20 N -0.554 5.554 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.161 1.161 25 C -0.143 4.143 26 C -0.069 4.069 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.252 0.748 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.081 0.919 48 H 0.057 0.943 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -26.529 13.453 -19.787 35.725 hybrid contribution 1.584 1.038 -0.665 2.008 sum -24.945 14.491 -20.452 35.363 Atomic orbital electron populations 1.22833 0.80608 1.03179 1.00350 1.87970 1.20117 1.28012 1.95381 1.22684 0.92863 0.84910 1.00599 1.21728 0.93719 0.96835 0.90429 0.92017 1.21798 1.01165 1.00576 0.96320 1.61901 1.16229 1.46334 1.01957 1.22153 0.87299 0.99019 0.98774 1.21639 1.01264 0.98678 0.93225 1.21359 0.97793 0.98585 0.92772 1.21417 0.79551 0.99823 0.98655 1.45756 1.09203 1.55289 1.26105 1.19970 0.89065 0.77561 0.81502 1.90689 1.62565 1.51008 1.40137 1.23273 0.95687 1.04932 1.02305 1.84732 1.06738 1.71366 1.32268 1.22464 0.90986 1.40570 1.13630 0.91899 1.25560 0.94956 0.95310 1.00153 1.70015 1.06202 1.42118 1.37091 0.85868 0.80400 0.80443 0.79662 1.18728 1.18286 1.16135 1.21507 0.94331 1.01038 0.97414 1.22092 1.01087 0.93999 0.89758 0.89511 0.93819 0.93324 0.91899 0.92853 0.91415 0.92005 0.92638 0.89950 0.94303 0.90702 0.92261 0.89516 0.92161 0.92726 0.74754 0.86842 0.86766 0.91375 0.90319 0.91864 0.94316 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.40 -6.32 9.80 -148.98 -1.46 -7.78 16 3 C 0.07 0.75 5.41 71.98 0.39 1.14 16 4 C 0.08 0.95 2.47 44.91 0.11 1.07 16 5 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 6 C -0.14 -1.67 8.53 71.98 0.61 -1.06 16 7 N -0.54 -7.62 4.46 -871.13 -3.88 -11.50 16 8 C 0.05 0.73 5.05 86.32 0.44 1.16 16 9 C -0.11 -1.62 5.22 30.65 0.16 -1.46 16 10 C -0.09 -1.25 2.29 -10.71 -0.02 -1.27 16 11 C 0.13 2.72 5.07 86.38 0.44 3.16 16 12 N -0.71 -16.72 5.31 -463.06 -2.46 -19.18 16 13 C 0.53 18.50 7.85 87.66 0.69 19.18 16 14 O -0.57 -24.64 15.86 -3.04 -0.05 -24.69 16 15 C -0.11 -4.19 6.16 71.24 0.44 -3.75 16 16 S -0.18 -9.06 18.55 -56.49 -1.05 -10.11 16 17 C -0.53 -30.96 10.04 67.95 0.68 -30.28 16 18 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 19 C 0.05 2.69 5.50 84.86 0.47 3.16 16 20 N -0.92 -55.96 13.97 21.65 0.30 -55.66 16 21 Si 0.91 45.35 27.74 68.60 1.90 47.25 16 22 H -0.26 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.24 -11.78 6.74 99.48 0.67 -11.11 16 25 C -0.10 -1.44 5.38 30.65 0.16 -1.28 16 26 C 0.06 0.72 5.28 86.33 0.46 1.18 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 28 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.05 0.37 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.05 0.55 6.18 -2.39 -0.01 0.53 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.67 6.19 -2.39 -0.01 0.65 16 34 H 0.05 0.89 7.58 -2.39 -0.02 0.87 16 35 H 0.08 1.09 5.85 -2.39 -0.01 1.07 16 36 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.07 1.00 7.27 -2.39 -0.02 0.98 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.42 7.09 7.69 -92.71 -0.71 6.38 16 43 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 44 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 45 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 46 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 48 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 49 H 0.08 0.93 6.05 -2.39 -0.01 0.92 16 Total: -1.00 -74.55 395.30 -0.25 -74.80 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.17 Total: 14.38 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 6.27 Total: -7.51 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -6.04 Total: -86.35 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.51 Total: -32.47 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal Total: -74.55 -0.25 -74.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222425372.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.605 kcal (2) G-P(sol) polarization free energy of solvation -74.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds