Wall clock time and date at job start Tue Mar 31 2020 15:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.46975 * 2 1 4 4 C 1.50704 * 109.47178 * 120.00296 * 2 1 3 5 5 H 1.07999 * 120.00274 * 114.23637 * 4 2 1 6 6 C 1.37879 * 119.99753 * 294.23341 * 4 2 1 7 7 N 1.31515 * 120.00039 * 209.35024 * 6 4 2 8 8 Si 1.86805 * 120.00077 * 29.35043 * 6 4 2 9 9 H 1.48493 * 109.47151 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47047 * 299.99944 * 8 6 4 11 11 H 1.48502 * 109.47140 * 59.99806 * 8 6 4 12 12 C 1.53001 * 109.47191 * 240.00062 * 2 1 3 13 13 S 1.81399 * 109.46865 * 60.00147 * 12 2 1 14 14 O 1.42094 * 110.54151 * 291.61887 * 13 12 2 15 15 O 1.42094 * 110.54806 * 68.37358 * 13 12 2 16 16 N 1.65603 * 104.44731 * 179.97438 * 13 12 2 17 17 C 1.47480 * 125.66369 * 269.68998 * 16 13 12 18 18 C 1.55264 * 104.77194 * 155.87183 * 17 16 13 19 19 C 1.54535 * 101.42729 * 36.74226 * 18 17 16 20 20 C 1.47168 * 125.66054 * 89.99670 * 16 13 12 21 21 C 1.52300 * 110.13887 * 83.22880 * 19 18 17 22 22 C 1.53250 * 109.35511 * 180.02562 * 21 19 18 23 23 C 1.53122 * 109.07144 * 303.47958 * 22 21 19 24 24 C 1.53038 * 109.39744 * 58.20984 * 23 22 21 25 25 N 1.46049 * 110.27487 * 206.45196 * 19 18 17 26 26 H 1.08993 * 109.47286 * 294.73311 * 1 2 3 27 27 H 1.08995 * 109.47108 * 54.73389 * 1 2 3 28 28 H 1.09004 * 109.46910 * 174.73056 * 1 2 3 29 29 H 1.09004 * 109.47536 * 186.02228 * 3 2 1 30 30 H 1.08995 * 109.47735 * 306.02785 * 3 2 1 31 31 H 1.09009 * 109.47202 * 66.02559 * 3 2 1 32 32 H 0.96994 * 119.99965 * 354.99042 * 7 6 4 33 33 H 1.09002 * 109.46895 * 179.97438 * 12 2 1 34 34 H 1.08999 * 109.47233 * 300.00015 * 12 2 1 35 35 H 1.09000 * 110.35757 * 274.84182 * 17 16 13 36 36 H 1.09005 * 110.34954 * 37.12615 * 17 16 13 37 37 H 1.09002 * 111.23783 * 278.63684 * 18 17 16 38 38 H 1.09007 * 110.89474 * 154.69407 * 18 17 16 39 39 H 1.08995 * 109.91175 * 300.85617 * 20 16 13 40 40 H 1.09002 * 109.90639 * 61.93597 * 20 16 13 41 41 H 1.09006 * 109.48894 * 299.99077 * 21 19 18 42 42 H 1.09003 * 109.49399 * 60.06406 * 21 19 18 43 43 H 1.08994 * 109.53526 * 183.59681 * 22 21 19 44 44 H 1.09005 * 109.60019 * 63.39334 * 22 21 19 45 45 H 1.08999 * 109.48379 * 298.23013 * 23 22 21 46 46 H 1.09000 * 109.48557 * 178.18486 * 23 22 21 47 47 H 1.09007 * 109.47303 * 180.27292 * 24 23 22 48 48 H 1.09000 * 109.47693 * 60.26674 * 24 23 22 49 49 H 1.00907 * 110.99888 * 53.39084 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5743 -1.6396 1.1341 6 6 1.8000 -0.1742 2.4793 7 7 2.6479 -0.3985 3.4593 8 14 0.2810 0.8709 2.7791 9 1 0.2638 1.3249 4.1929 10 1 0.3082 2.0529 1.8805 11 1 -0.9360 0.0664 2.5021 12 6 2.0400 -0.7212 -1.2493 13 16 1.4354 0.1340 -2.7303 14 8 0.0281 -0.0183 -2.8544 15 8 2.0479 1.4101 -2.8544 16 7 2.0542 -0.7399 -3.9936 17 6 3.3507 -0.4975 -4.6534 18 6 3.7376 -1.8642 -5.2803 19 6 2.3588 -2.3937 -5.7351 20 6 1.3987 -1.8834 -4.6484 21 6 1.9927 -1.8055 -7.0914 22 6 0.6238 -2.3412 -7.5245 23 6 0.6677 -3.8717 -7.5405 24 6 1.0466 -4.3839 -6.1491 25 7 2.3651 -3.8536 -5.7742 26 1 -0.3633 0.4299 0.9333 27 1 -0.3633 0.5933 -0.8390 28 1 -0.3633 -1.0234 -0.0944 29 1 3.1246 1.4444 -0.1078 30 1 1.5912 1.9865 -0.8310 31 1 1.7673 1.9242 0.9391 32 1 3.3971 -0.9995 3.3244 33 1 3.1300 -0.7208 -1.2494 34 1 1.6767 -1.7489 -1.2493 35 1 3.2458 0.2621 -5.4281 36 1 4.0977 -0.1920 -3.9206 37 1 4.1853 -2.5261 -4.5389 38 1 4.4038 -1.7266 -6.1320 39 1 1.2113 -2.6713 -3.9190 40 1 0.4592 -1.5642 -5.0995 41 1 1.9511 -0.7188 -7.0173 42 1 2.7445 -2.0917 -7.8270 43 1 0.3874 -1.9728 -8.5227 44 1 -0.1391 -2.0058 -6.8220 45 1 1.4095 -4.2066 -8.2656 46 1 -0.3124 -4.2607 -7.8167 47 1 1.0829 -5.4733 -6.1603 48 1 0.3024 -4.0526 -5.4248 49 1 2.6721 -4.2376 -4.8930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575297913.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:20 Heat of formation + Delta-G solvation = -62.440444 kcal Electronic energy + Delta-G solvation = -28701.232224 eV Core-core repulsion = 24983.396783 eV Total energy + Delta-G solvation = -3717.835441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.45492 -36.75672 -36.68009 -36.41634 -35.48257 -32.54176 -32.03124 -31.53543 -29.40671 -27.39261 -26.37604 -26.23945 -24.54809 -23.85167 -22.95615 -21.35125 -19.70250 -19.03949 -18.56687 -17.66380 -16.93017 -16.52202 -16.27422 -15.57548 -15.29731 -15.03389 -14.60805 -14.58235 -13.93069 -13.70006 -13.45122 -13.37788 -13.28428 -13.18705 -12.89093 -12.81634 -12.56639 -12.38455 -12.05454 -11.95779 -11.69616 -11.62830 -11.51782 -11.41664 -11.33107 -11.13762 -11.00205 -10.93683 -10.62650 -10.56491 -10.43465 -10.21457 -9.95880 -9.94708 -9.13781 -9.04511 -8.87242 -8.71270 -8.10501 -6.62196 -4.16481 0.62020 2.93063 3.32336 3.37249 3.58544 3.79217 4.11839 4.19006 4.37115 4.38627 4.49555 4.57554 4.66666 4.88495 4.91933 5.00591 5.05927 5.12501 5.21435 5.30114 5.33668 5.37717 5.45739 5.47215 5.54241 5.62678 5.68274 5.71971 5.72716 5.83127 5.86869 5.95793 5.99282 6.02148 6.12728 6.22715 6.29193 6.35152 6.44594 6.49783 6.71790 6.79104 6.86443 7.08167 7.15051 7.33357 7.99856 8.25208 8.78067 9.47111 10.76670 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.003531 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.116587 B = 7928.224937 C = 8037.925923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.061 3.939 3 C -0.171 4.171 4 C -0.604 4.604 5 H 0.060 0.940 6 C 0.042 3.958 7 N -0.885 5.885 8 Si 1.045 2.955 9 H -0.295 1.295 10 H -0.273 1.273 11 H -0.282 1.282 12 C -0.571 4.571 13 S 2.602 3.398 14 O -0.961 6.961 15 O -0.957 6.957 16 N -1.017 6.017 17 C 0.121 3.879 18 C -0.119 4.119 19 C 0.111 3.889 20 C 0.095 3.905 21 C -0.101 4.101 22 C -0.128 4.128 23 C -0.116 4.116 24 C 0.051 3.949 25 N -0.672 5.672 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.067 0.933 32 H 0.271 0.729 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.036 0.964 49 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.169 -6.103 -21.565 22.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.058 3.942 3 C -0.228 4.228 4 C -0.642 4.642 5 H 0.078 0.922 6 C -0.166 4.166 7 N -0.516 5.516 8 Si 0.878 3.122 9 H -0.222 1.222 10 H -0.200 1.200 11 H -0.210 1.210 12 C -0.704 4.704 13 S 2.702 3.298 14 O -0.951 6.951 15 O -0.948 6.948 16 N -0.854 5.854 17 C -0.005 4.005 18 C -0.159 4.159 19 C 0.017 3.983 20 C -0.033 4.033 21 C -0.139 4.139 22 C -0.165 4.165 23 C -0.154 4.154 24 C -0.078 4.078 25 N -0.304 5.304 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.054 0.946 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.250 -4.414 -21.124 21.616 hybrid contribution 0.587 -1.480 0.081 1.594 sum -0.663 -5.894 -21.043 21.863 Atomic orbital electron populations 1.22770 0.98334 1.01853 1.00641 1.18180 0.91366 0.92559 0.92141 1.22634 1.01558 0.97076 1.01570 1.21549 1.41351 1.11310 0.89968 0.92172 1.25721 0.99963 0.98176 0.92750 1.70890 1.12034 1.31266 1.37441 0.84226 0.76170 0.76840 0.74982 1.22244 1.19973 1.21009 1.30421 1.11649 1.12629 1.15721 1.05489 0.74505 0.74794 0.75019 1.93536 1.29294 1.86580 1.85706 1.93550 1.78163 1.37395 1.85668 1.58880 1.30188 1.46885 1.49413 1.22054 0.84156 0.97146 0.97127 1.22861 0.95911 0.95961 1.01131 1.21422 0.94592 0.87763 0.94478 1.22485 0.97201 0.88326 0.95262 1.21464 0.97454 0.99968 0.94982 1.21688 0.97435 0.95799 1.01619 1.21572 1.01295 0.95583 0.96967 1.21999 0.89597 0.99543 0.96628 1.60242 1.27434 1.05011 1.37663 0.92844 0.93829 0.92154 0.92533 0.94409 0.91398 0.91867 0.85990 0.86322 0.91183 0.90383 0.90120 0.89401 0.92192 0.90816 0.91061 0.90746 0.91577 0.91734 0.91169 0.91640 0.90567 0.94591 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.10 7.31 37.16 0.27 -3.82 16 2 C 0.06 1.43 0.52 -155.66 -0.08 1.35 16 3 C -0.17 -3.98 7.43 37.15 0.28 -3.71 16 4 C -0.60 -16.38 8.42 -34.44 -0.29 -16.67 16 5 H 0.06 1.72 7.99 -52.49 -0.42 1.30 16 6 C 0.04 1.18 5.06 -17.82 -0.09 1.09 16 7 N -0.88 -26.33 13.70 55.43 0.76 -25.57 16 8 Si 1.05 25.55 23.54 -169.99 -4.00 21.55 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.27 -6.21 5.75 56.52 0.32 -5.89 16 11 H -0.28 -6.52 6.68 56.52 0.38 -6.14 16 12 C -0.57 -10.97 5.12 37.16 0.19 -10.78 16 13 S 2.60 47.17 4.68 -107.50 -0.50 46.67 16 14 O -0.96 -19.42 15.34 -57.54 -0.88 -20.30 16 15 O -0.96 -19.34 15.35 -57.54 -0.88 -20.23 16 16 N -1.02 -14.13 3.63 -111.40 -0.40 -14.53 16 17 C 0.12 1.36 6.57 -2.31 -0.02 1.35 16 18 C -0.12 -1.07 6.20 -24.73 -0.15 -1.22 16 19 C 0.11 1.05 0.72 -131.24 -0.09 0.95 16 20 C 0.10 1.15 4.94 -3.30 -0.02 1.13 16 21 C -0.10 -0.88 4.72 -26.96 -0.13 -1.01 16 22 C -0.13 -1.06 5.79 -26.54 -0.15 -1.21 16 23 C -0.12 -0.87 6.07 -26.65 -0.16 -1.04 16 24 C 0.05 0.41 6.34 -3.76 -0.02 0.39 16 25 N -0.67 -5.77 6.30 -99.59 -0.63 -6.40 16 26 H 0.05 1.24 2.24 -51.93 -0.12 1.12 16 27 H 0.04 0.94 5.86 -51.93 -0.30 0.63 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.04 0.82 5.91 -51.93 -0.31 0.51 16 31 H 0.07 1.62 4.41 -51.92 -0.23 1.39 16 32 H 0.27 7.95 8.73 -40.82 -0.36 7.59 16 33 H 0.12 2.18 8.14 -51.92 -0.42 1.76 16 34 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 35 H 0.07 0.74 7.77 -51.93 -0.40 0.34 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.69 8.00 -51.93 -0.42 0.28 16 38 H 0.09 0.65 8.01 -51.92 -0.42 0.24 16 39 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 40 H 0.07 0.93 6.18 -51.93 -0.32 0.61 16 41 H 0.07 0.65 7.51 -51.93 -0.39 0.26 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.60 6.55 -51.93 -0.34 0.26 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.04 0.31 7.08 -51.93 -0.37 -0.05 16 49 H 0.35 2.77 8.62 -39.29 -0.34 2.44 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -32.34 361.22 -9.81 -42.16 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -8.25 Total: 4.40 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: -0.47 Total: -33.19 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.27 Total: -46.49 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -1.77 Total: -40.53 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -4.00 Total: 21.55 kcal Atomic # 16 Polarization: 47.17 SS G_CDS: -0.50 Total: 46.67 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.34 -9.81 -42.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575297913.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.284 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds