Wall clock time and date at job start Tue Mar 31 2020 17:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46910 * 109.47127 * 65.00091 * 4 2 1 6 6 C 1.46897 * 111.00178 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47289 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47915 * 59.97386 * 7 6 5 9 9 C 1.53091 * 109.47953 * 180.02562 * 7 6 5 10 10 C 1.53181 * 109.15842 * 177.59068 * 9 7 6 11 11 C 1.53178 * 109.03738 * 303.01500 * 10 9 7 12 12 C 1.53101 * 109.16086 * 56.98211 * 11 10 9 13 13 O 1.42898 * 109.41434 * 302.39015 * 12 11 10 14 14 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 15 15 N 1.46501 * 109.47135 * 295.00335 * 14 2 1 16 16 C 1.34783 * 119.99675 * 179.97438 * 15 14 2 17 17 O 1.21278 * 120.00464 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99677 * 180.02562 * 16 15 14 19 19 S 1.81003 * 109.46963 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99661 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00450 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99746 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99871 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99859 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47723 * 59.99740 * 24 22 20 26 26 H 1.48500 * 109.47117 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47498 * 299.99579 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 32 32 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 33 33 H 1.00899 * 110.99514 * 303.95543 * 5 4 2 34 34 H 1.09005 * 109.47233 * 300.00192 * 6 5 4 35 35 H 1.09006 * 109.47211 * 59.99522 * 6 5 4 36 36 H 1.08996 * 109.52036 * 297.49105 * 9 7 6 37 37 H 1.08996 * 109.52190 * 57.68587 * 9 7 6 38 38 H 1.09000 * 109.54405 * 62.88416 * 10 9 7 39 39 H 1.09000 * 109.53831 * 183.06193 * 10 9 7 40 40 H 1.08994 * 109.52185 * 176.88600 * 11 10 9 41 41 H 1.09000 * 109.52373 * 297.01606 * 11 10 9 42 42 H 1.09003 * 109.47890 * 62.37366 * 12 11 10 43 43 H 1.09000 * 109.47967 * 182.40999 * 12 11 10 44 44 H 1.09006 * 109.47194 * 55.00274 * 14 2 1 45 45 H 1.08997 * 109.47756 * 174.99755 * 14 2 1 46 46 H 0.96997 * 120.00359 * 0.02562 * 15 14 2 47 47 H 1.09007 * 109.47112 * 299.99764 * 18 16 15 48 48 H 1.08999 * 109.47201 * 59.99776 * 18 16 15 49 49 H 0.97002 * 119.99737 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 1.6515 0.0374 -2.4456 6 6 2.1249 -0.6271 -3.6672 7 6 1.7026 0.1909 -4.8892 8 1 2.1369 1.1887 -4.8264 9 6 2.1954 -0.5018 -6.1624 10 6 1.7174 0.2906 -7.3831 11 6 0.1906 0.4056 -7.3376 12 6 -0.2247 1.0632 -6.0189 13 8 0.2776 0.2930 -4.9251 14 6 2.0400 -0.7212 1.2493 15 7 1.6524 0.0355 2.4424 16 6 1.9956 -0.4135 3.6660 17 8 2.6249 -1.4440 3.7794 18 6 1.5964 0.3645 4.8934 19 16 2.1999 -0.4886 6.3713 20 6 1.6105 0.6070 7.6190 21 1 1.0583 1.4931 7.3428 22 6 1.8566 0.3317 8.9570 23 7 2.5309 -0.7475 9.2936 24 14 1.2311 1.4927 10.2798 25 1 -0.2488 1.5843 10.1989 26 1 1.6223 0.9771 11.6164 27 1 1.8222 2.8398 10.0762 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 3.1263 -0.7994 -1.2055 32 1 1.6054 -1.7198 -1.2951 33 1 0.6529 0.1793 -2.4753 34 1 3.2118 -0.7051 -3.6405 35 1 1.6905 -1.6250 -3.7296 36 1 3.2846 -0.5411 -6.1574 37 1 1.7935 -1.5141 -6.2051 38 1 2.1587 1.2871 -7.3666 39 1 2.0184 -0.2266 -8.2941 40 1 -0.1538 1.0151 -8.1729 41 1 -0.2517 -0.5884 -7.4051 42 1 0.1846 2.0724 -5.9712 43 1 -1.3123 1.1088 -5.9621 44 1 1.6054 -1.7198 1.2952 45 1 3.1263 -0.7995 1.2057 46 1 1.1482 0.8591 2.3518 47 1 2.0310 1.3632 4.8478 48 1 0.5100 0.4427 4.9366 49 1 2.7026 -0.9401 10.2287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617194.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:12 Heat of formation + Delta-G solvation = -110.617154 kcal Electronic energy + Delta-G solvation = -25040.012480 eV Core-core repulsion = 21320.087940 eV Total energy + Delta-G solvation = -3719.924540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.96002 -39.26562 -37.55131 -35.17520 -34.10770 -32.96867 -32.40351 -31.25548 -29.28022 -27.39540 -26.49817 -25.46536 -24.80544 -23.67849 -22.18274 -20.78832 -20.52206 -20.08831 -17.80673 -17.06529 -16.65930 -16.28580 -16.21993 -15.92150 -15.42369 -15.17244 -14.92215 -14.78245 -14.67813 -14.27356 -13.99561 -13.79723 -13.67171 -13.18767 -13.11054 -12.93911 -12.73016 -12.62016 -12.49186 -12.25611 -11.82737 -11.75634 -11.58662 -11.41964 -11.09047 -11.07329 -11.02198 -11.01504 -10.97734 -10.76059 -10.69685 -9.88942 -9.79657 -9.35392 -9.03877 -8.82611 -8.74314 -8.20887 -6.47105 -6.19076 -3.89494 3.06622 3.15798 3.25400 3.29236 3.30134 3.33087 3.63470 3.89036 4.23096 4.26137 4.33623 4.36145 4.54848 4.63862 4.68466 4.71448 4.73637 4.80135 4.94896 5.07653 5.15922 5.17573 5.20571 5.22630 5.26452 5.28138 5.38746 5.40479 5.44366 5.45735 5.52753 5.58454 5.61210 5.69207 5.73164 5.78012 5.80545 5.93490 6.04539 6.11221 6.17852 6.61568 6.70706 6.80094 7.09457 7.61687 7.77282 8.37510 8.67331 9.26045 10.88320 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.042046 B = 0.001469 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.771321 B =19056.672480 C =19498.196319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 H 0.087 0.913 4 C 0.065 3.935 5 N -0.687 5.687 6 C 0.067 3.933 7 C 0.092 3.908 8 H 0.067 0.933 9 C -0.151 4.151 10 C -0.122 4.122 11 C -0.158 4.158 12 C 0.063 3.937 13 O -0.380 6.380 14 C 0.127 3.873 15 N -0.737 5.737 16 C 0.531 3.469 17 O -0.519 6.519 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.350 0.650 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.398 0.602 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.390 3.954 -34.997 35.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.120 4.120 3 H 0.105 0.895 4 C -0.064 4.064 5 N -0.320 5.320 6 C -0.062 4.062 7 C 0.034 3.966 8 H 0.085 0.915 9 C -0.189 4.189 10 C -0.160 4.160 11 C -0.195 4.195 12 C -0.014 4.014 13 O -0.299 6.299 14 C 0.002 3.998 15 N -0.392 5.392 16 C 0.317 3.683 17 O -0.394 6.394 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.170 0.830 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.232 0.768 47 H 0.108 0.892 48 H 0.107 0.893 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.833 2.438 -34.484 34.686 hybrid contribution -1.815 1.685 0.304 2.496 sum -4.648 4.123 -34.180 34.740 Atomic orbital electron populations 1.21888 0.94764 1.02147 1.02064 1.21353 0.96387 1.00999 0.93251 0.89506 1.21898 1.00879 0.94669 0.88976 1.60468 1.20973 1.49652 1.00912 1.21975 1.00486 0.95377 0.88381 1.22163 0.81576 0.99093 0.93768 0.91500 1.22182 1.01526 1.00307 0.94883 1.21572 0.95574 1.00640 0.98182 1.22202 0.96566 1.02245 0.98523 1.22536 0.99384 0.93817 0.85632 1.87884 1.20761 1.73368 1.47928 1.21242 1.00008 0.95273 0.83255 1.45985 1.59528 1.28125 1.05516 1.20299 0.78703 0.85473 0.83835 1.90697 1.38534 1.23897 1.86234 1.23532 1.04760 1.03464 0.98646 1.85389 1.72815 1.33014 0.92178 1.22839 1.41541 1.11253 0.92821 0.90982 1.24985 0.94850 0.95794 0.97907 1.70011 1.37432 1.24642 1.18234 0.86227 0.79182 0.80353 0.79748 1.19957 1.20818 1.19945 0.92586 0.92231 0.92152 0.90605 0.94765 0.82996 0.89673 0.94461 0.90680 0.91038 0.91744 0.91427 0.90933 0.91099 0.93141 0.88915 0.91726 0.91600 0.76823 0.89243 0.89269 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.84 37.16 0.33 -0.91 16 2 C -0.10 -0.88 2.63 -90.63 -0.24 -1.12 16 3 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 4 C 0.07 0.54 5.14 -3.82 -0.02 0.52 16 5 N -0.69 -5.50 6.50 -113.77 -0.74 -6.24 16 6 C 0.07 0.47 5.42 -3.82 -0.02 0.45 16 7 C 0.09 0.61 2.92 -26.68 -0.08 0.53 16 8 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 9 C -0.15 -0.79 5.42 -26.59 -0.14 -0.94 16 10 C -0.12 -0.56 6.03 -26.55 -0.16 -0.72 16 11 C -0.16 -0.74 6.14 -26.59 -0.16 -0.90 16 12 C 0.06 0.35 6.84 37.21 0.25 0.61 16 13 O -0.38 -2.97 9.74 -35.23 -0.34 -3.31 16 14 C 0.13 1.50 5.06 -4.04 -0.02 1.48 16 15 N -0.74 -10.04 5.28 -60.29 -0.32 -10.36 16 16 C 0.53 10.12 7.85 -10.98 -0.09 10.04 16 17 O -0.52 -12.06 15.86 5.56 0.09 -11.98 16 18 C -0.15 -3.15 6.16 36.01 0.22 -2.92 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.54 -15.44 9.50 30.94 0.29 -15.14 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 24 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.44 6.68 -51.93 -0.35 0.09 16 30 H 0.06 0.50 7.18 -51.93 -0.37 0.13 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.35 2.89 6.37 -39.29 -0.25 2.64 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.40 4.30 7.65 -40.82 -0.31 3.99 16 47 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 48 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 49 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 404.19 15.07 6.09 6.09 Total: -1.00 -34.38 404.19 -10.51 -44.89 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -8.86 Total: 0.89 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 0.07 Total: -6.99 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -0.32 Total: -42.24 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.26 Total: -15.29 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.38 -10.51 -44.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617194.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.729 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds