Wall clock time and date at job start Tue Mar 31 2020 17:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46910 * 109.47127 * 65.00091 * 4 2 1 6 6 C 1.46897 * 111.00178 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47289 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47915 * 59.97386 * 7 6 5 9 9 C 1.53091 * 109.47953 * 180.02562 * 7 6 5 10 10 C 1.53181 * 109.15842 * 177.59068 * 9 7 6 11 11 C 1.53178 * 109.03738 * 303.01500 * 10 9 7 12 12 C 1.53101 * 109.16086 * 56.98211 * 11 10 9 13 13 O 1.42898 * 109.41434 * 302.39015 * 12 11 10 14 14 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 15 15 N 1.46501 * 109.47135 * 295.00335 * 14 2 1 16 16 C 1.34783 * 119.99675 * 179.97438 * 15 14 2 17 17 O 1.21278 * 120.00464 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99677 * 180.02562 * 16 15 14 19 19 S 1.81003 * 109.46963 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99661 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00450 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99746 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99871 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99859 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47723 * 59.99740 * 24 22 20 26 26 H 1.48500 * 109.47117 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47498 * 299.99579 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 32 32 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 33 33 H 1.00899 * 110.99514 * 303.95543 * 5 4 2 34 34 H 1.09005 * 109.47233 * 300.00192 * 6 5 4 35 35 H 1.09006 * 109.47211 * 59.99522 * 6 5 4 36 36 H 1.08996 * 109.52036 * 297.49105 * 9 7 6 37 37 H 1.08996 * 109.52190 * 57.68587 * 9 7 6 38 38 H 1.09000 * 109.54405 * 62.88416 * 10 9 7 39 39 H 1.09000 * 109.53831 * 183.06193 * 10 9 7 40 40 H 1.08994 * 109.52185 * 176.88600 * 11 10 9 41 41 H 1.09000 * 109.52373 * 297.01606 * 11 10 9 42 42 H 1.09003 * 109.47890 * 62.37366 * 12 11 10 43 43 H 1.09000 * 109.47967 * 182.40999 * 12 11 10 44 44 H 1.09006 * 109.47194 * 55.00274 * 14 2 1 45 45 H 1.08997 * 109.47756 * 174.99755 * 14 2 1 46 46 H 0.96997 * 120.00359 * 0.02562 * 15 14 2 47 47 H 1.09007 * 109.47112 * 299.99764 * 18 16 15 48 48 H 1.08999 * 109.47201 * 59.99776 * 18 16 15 49 49 H 0.97002 * 119.99737 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 1.6515 0.0374 -2.4456 6 6 2.1249 -0.6271 -3.6672 7 6 1.7026 0.1909 -4.8892 8 1 2.1369 1.1887 -4.8264 9 6 2.1954 -0.5018 -6.1624 10 6 1.7174 0.2906 -7.3831 11 6 0.1906 0.4056 -7.3376 12 6 -0.2247 1.0632 -6.0189 13 8 0.2776 0.2930 -4.9251 14 6 2.0400 -0.7212 1.2493 15 7 1.6524 0.0355 2.4424 16 6 1.9956 -0.4135 3.6660 17 8 2.6249 -1.4440 3.7794 18 6 1.5964 0.3645 4.8934 19 16 2.1999 -0.4886 6.3713 20 6 1.6105 0.6070 7.6190 21 1 1.0583 1.4931 7.3428 22 6 1.8566 0.3317 8.9570 23 7 2.5309 -0.7475 9.2936 24 14 1.2311 1.4927 10.2798 25 1 -0.2488 1.5843 10.1989 26 1 1.6223 0.9771 11.6164 27 1 1.8222 2.8398 10.0762 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 3.1263 -0.7994 -1.2055 32 1 1.6054 -1.7198 -1.2951 33 1 0.6529 0.1793 -2.4753 34 1 3.2118 -0.7051 -3.6405 35 1 1.6905 -1.6250 -3.7296 36 1 3.2846 -0.5411 -6.1574 37 1 1.7935 -1.5141 -6.2051 38 1 2.1587 1.2871 -7.3666 39 1 2.0184 -0.2266 -8.2941 40 1 -0.1538 1.0151 -8.1729 41 1 -0.2517 -0.5884 -7.4051 42 1 0.1846 2.0724 -5.9712 43 1 -1.3123 1.1088 -5.9621 44 1 1.6054 -1.7198 1.2952 45 1 3.1263 -0.7995 1.2057 46 1 1.1482 0.8591 2.3518 47 1 2.0310 1.3632 4.8478 48 1 0.5100 0.4427 4.9366 49 1 2.7026 -0.9401 10.2287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753617194.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:11 Heat of formation + Delta-G solvation = -134.984894 kcal Electronic energy + Delta-G solvation = -25041.069145 eV Core-core repulsion = 21320.087940 eV Total energy + Delta-G solvation = -3720.981204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.70436 -40.40112 -38.41397 -36.11413 -34.57698 -34.54052 -33.93112 -31.97448 -30.70272 -27.97623 -27.75050 -27.22906 -25.43895 -24.31013 -22.71635 -21.79096 -21.29582 -20.98983 -19.78471 -17.86081 -17.62433 -17.29089 -17.04340 -16.86884 -16.78291 -16.54958 -16.00212 -15.69797 -15.52803 -15.33045 -15.03681 -14.69662 -14.55652 -14.27817 -14.25885 -13.93547 -13.60875 -13.45981 -13.33730 -13.16009 -13.10270 -12.85365 -12.78003 -12.62745 -12.20115 -12.13117 -11.97399 -11.83247 -11.75692 -11.71896 -11.53213 -11.19723 -11.11952 -10.93897 -10.35138 -10.27206 -10.09991 -9.38785 -8.65995 -8.33528 -6.11907 1.27871 1.44882 1.47761 1.57695 1.62709 2.26737 2.30701 2.84030 3.00539 3.13171 3.33945 3.82152 3.85799 3.90796 3.94570 3.97086 3.99665 4.06343 4.15179 4.23385 4.30632 4.31812 4.49416 4.51917 4.53576 4.58675 4.66086 4.70172 4.75967 4.78120 4.82023 4.87921 4.95635 4.97214 5.01863 5.06598 5.13790 5.21087 5.26086 5.36075 5.38851 5.42476 5.48637 6.01898 6.20561 6.32635 6.45484 6.52458 7.07545 7.25822 8.75504 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.042046 B = 0.001469 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.771321 B =19056.672480 C =19498.196319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 H 0.092 0.908 4 C 0.069 3.931 5 N -0.689 5.689 6 C 0.067 3.933 7 C 0.094 3.906 8 H 0.063 0.937 9 C -0.149 4.149 10 C -0.123 4.123 11 C -0.155 4.155 12 C 0.057 3.943 13 O -0.400 6.400 14 C 0.127 3.873 15 N -0.710 5.710 16 C 0.532 3.468 17 O -0.568 6.568 18 C -0.130 4.130 19 S -0.152 6.152 20 C -0.548 4.548 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.262 1.262 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.032 0.968 33 H 0.349 0.651 34 H 0.092 0.908 35 H 0.032 0.968 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.099 0.901 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.415 0.585 47 H 0.110 0.890 48 H 0.110 0.890 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.508 6.063 -36.358 37.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 H 0.111 0.889 4 C -0.061 4.061 5 N -0.321 5.321 6 C -0.062 4.062 7 C 0.036 3.964 8 H 0.081 0.919 9 C -0.187 4.187 10 C -0.160 4.160 11 C -0.193 4.193 12 C -0.019 4.019 13 O -0.319 6.319 14 C 0.003 3.997 15 N -0.364 5.364 16 C 0.318 3.682 17 O -0.446 6.446 18 C -0.281 4.281 19 S 0.075 5.925 20 C -0.696 4.696 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.187 1.187 26 H -0.204 1.204 27 H -0.186 1.186 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.169 0.831 34 H 0.111 0.889 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.253 0.747 47 H 0.128 0.872 48 H 0.128 0.872 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.977 4.586 -35.904 36.413 hybrid contribution -1.485 1.034 0.569 1.897 sum -5.462 5.620 -35.334 36.193 Atomic orbital electron populations 1.21878 0.94032 1.02048 1.02713 1.21214 0.96796 1.00725 0.91742 0.88940 1.21835 1.00855 0.94522 0.88900 1.60479 1.20895 1.49671 1.01080 1.22023 1.00879 0.95123 0.88219 1.22149 0.81263 0.98863 0.94124 0.91926 1.22164 1.02058 0.99882 0.94571 1.21596 0.95524 1.00793 0.98117 1.22184 0.96616 1.02021 0.98475 1.22682 0.99833 0.93833 0.85562 1.87852 1.21297 1.73834 1.48937 1.21362 0.99698 0.95147 0.83526 1.45733 1.57967 1.28379 1.04312 1.20078 0.78474 0.84734 0.84904 1.90687 1.41041 1.25962 1.86955 1.23377 1.05730 1.03360 0.95613 1.85576 1.74291 1.35893 0.96772 1.23188 1.41645 1.11449 0.93332 0.89870 1.26127 0.94761 0.97560 1.00616 1.70181 1.38894 1.26842 1.18862 0.85001 0.78978 0.77955 0.76041 1.18659 1.20386 1.18641 0.93091 0.91125 0.91960 0.90596 0.94974 0.83139 0.88946 0.94979 0.89764 0.91643 0.91411 0.90668 0.89608 0.91769 0.92804 0.88245 0.92607 0.92305 0.74722 0.87180 0.87182 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.84 71.98 0.64 -1.50 16 2 C -0.09 -1.34 2.63 -10.80 -0.03 -1.37 16 3 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 4 C 0.07 1.04 5.14 86.30 0.44 1.48 16 5 N -0.69 -10.07 6.50 -513.87 -3.34 -13.42 16 6 C 0.07 0.87 5.42 86.30 0.47 1.34 16 7 C 0.09 1.15 2.92 30.63 0.09 1.24 16 8 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 9 C -0.15 -1.40 5.42 30.69 0.17 -1.23 16 10 C -0.12 -0.95 6.03 30.71 0.19 -0.77 16 11 C -0.16 -1.24 6.14 30.69 0.19 -1.06 16 12 C 0.06 0.58 6.84 72.02 0.49 1.07 16 13 O -0.40 -5.86 9.74 -148.98 -1.45 -7.32 16 14 C 0.13 2.86 5.06 86.38 0.44 3.30 16 15 N -0.71 -18.13 5.28 -463.05 -2.45 -20.58 16 16 C 0.53 19.97 7.85 87.66 0.69 20.66 16 17 O -0.57 -26.87 15.86 -3.02 -0.05 -26.91 16 18 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 19 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 20 C -0.55 -31.55 9.50 67.95 0.65 -30.91 16 21 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 22 C 0.01 0.81 5.49 84.86 0.47 1.28 16 23 N -0.91 -56.38 13.22 21.65 0.29 -56.09 16 24 Si 1.00 43.74 29.55 68.60 2.03 45.76 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.88 6.68 -2.39 -0.02 0.87 16 30 H 0.06 0.87 7.18 -2.38 -0.02 0.85 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.03 0.50 8.14 -2.39 -0.02 0.49 16 33 H 0.35 5.26 6.37 -89.69 -0.57 4.68 16 34 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 36 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.09 0.45 8.14 -2.39 -0.02 0.44 16 41 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.42 7.81 7.65 -92.71 -0.71 7.10 16 47 H 0.11 3.95 8.14 -2.39 -0.02 3.94 16 48 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 49 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -75.87 404.19 -1.18 -77.04 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -0.36 Total: 22.46 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 5.32 Total: -11.21 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -5.50 Total: -90.09 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -1.50 Total: -34.23 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -75.87 -1.18 -77.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617194.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.945 kcal (2) G-P(sol) polarization free energy of solvation -75.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds