Wall clock time and date at job start Tue Mar 31 2020 17:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47290 * 2 1 4 4 C 1.53004 * 109.47245 * 240.00131 * 2 1 3 5 5 N 1.46901 * 109.46916 * 64.99745 * 4 2 1 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.52993 * 109.47039 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.48309 * 304.99904 * 7 6 5 9 9 C 1.53098 * 109.48237 * 184.98042 * 7 6 5 10 10 C 1.53176 * 109.16398 * 182.41998 * 9 7 6 11 11 C 1.53182 * 109.04743 * 56.96158 * 10 9 7 12 12 C 1.53096 * 109.16014 * 303.02290 * 11 10 9 13 13 O 1.42901 * 109.48283 * 65.02156 * 7 6 5 14 14 C 1.52999 * 109.47316 * 120.00283 * 2 1 3 15 15 N 1.46496 * 109.47060 * 294.99844 * 14 2 1 16 16 C 1.34771 * 120.00172 * 179.97438 * 15 14 2 17 17 O 1.21285 * 120.00169 * 0.02562 * 16 15 14 18 18 C 1.50704 * 120.00333 * 180.02562 * 16 15 14 19 19 S 1.80995 * 109.47328 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99959 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00115 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00021 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99986 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99966 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47014 * 89.99634 * 24 22 20 26 26 H 1.48492 * 109.46829 * 209.99721 * 24 22 20 27 27 H 1.48496 * 109.46925 * 329.99743 * 24 22 20 28 28 H 1.08993 * 109.46950 * 299.99341 * 1 2 3 29 29 H 1.08997 * 109.47303 * 60.00055 * 1 2 3 30 30 H 1.09007 * 109.46679 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46889 * 305.00126 * 4 2 1 32 32 H 1.08995 * 109.47384 * 184.99766 * 4 2 1 33 33 H 1.00901 * 111.00067 * 303.95263 * 5 4 2 34 34 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 35 35 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 36 36 H 1.09004 * 109.51729 * 302.31425 * 9 7 6 37 37 H 1.08997 * 109.52151 * 62.49871 * 9 7 6 38 38 H 1.08997 * 109.53468 * 297.09058 * 10 9 7 39 39 H 1.09000 * 109.54510 * 176.83125 * 10 9 7 40 40 H 1.08996 * 109.52388 * 183.12052 * 11 10 9 41 41 H 1.09002 * 109.52457 * 62.92921 * 11 10 9 42 42 H 1.08998 * 109.48592 * 297.62817 * 12 11 10 43 43 H 1.09002 * 109.48011 * 177.58802 * 12 11 10 44 44 H 1.08996 * 109.47107 * 55.00079 * 14 2 1 45 45 H 1.09000 * 109.47382 * 175.00077 * 14 2 1 46 46 H 0.97007 * 120.00066 * 0.02562 * 15 14 2 47 47 H 1.09004 * 109.46509 * 300.00204 * 18 16 15 48 48 H 1.09000 * 109.47393 * 59.99870 * 18 16 15 49 49 H 0.96996 * 120.00039 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 1.6514 0.0375 -2.4456 6 6 2.1248 -0.6271 -3.6673 7 6 1.7024 0.1910 -4.8892 8 1 0.6235 0.3449 -4.8685 9 6 2.0861 -0.5624 -6.1655 10 6 1.7150 0.2897 -7.3832 11 6 2.4166 1.6471 -7.2760 12 6 2.0197 2.3151 -5.9568 13 8 2.3648 1.4570 -4.8673 14 6 2.0401 -0.7213 1.2492 15 7 1.6526 0.0352 2.4423 16 6 1.9957 -0.4137 3.6659 17 8 2.6257 -1.4439 3.7792 18 6 1.5966 0.3642 4.8933 19 16 2.2000 -0.4889 6.3711 20 6 1.6107 0.6066 7.6190 21 1 1.0586 1.4928 7.3428 22 6 1.8569 0.3312 8.9570 23 7 2.5302 -0.7486 9.2936 24 14 1.2315 1.4923 10.2800 25 1 -0.1301 1.0751 10.7013 26 1 2.1463 1.4494 11.4488 27 1 1.1810 2.8752 9.7413 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.6054 -1.7198 -1.2952 32 1 3.1263 -0.7994 -1.2057 33 1 0.6528 0.1793 -2.4753 34 1 3.2116 -0.7050 -3.6406 35 1 1.6904 -1.6248 -3.7297 36 1 3.1595 -0.7524 -6.1675 37 1 1.5476 -1.5092 -6.2054 38 1 0.6355 0.4381 -7.4088 39 1 2.0366 -0.2160 -8.2937 40 1 2.1144 2.2803 -8.1101 41 1 3.4966 1.5020 -7.3003 42 1 0.9450 2.4967 -5.9501 43 1 2.5493 3.2623 -5.8552 44 1 1.6055 -1.7198 1.2950 45 1 3.1264 -0.7995 1.2055 46 1 1.1483 0.8590 2.3518 47 1 2.0312 1.3628 4.8477 48 1 0.5102 0.4425 4.9367 49 1 2.7020 -0.9412 10.2286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617195.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:20 Heat of formation + Delta-G solvation = -108.160605 kcal Electronic energy + Delta-G solvation = -25006.150222 eV Core-core repulsion = 21286.332206 eV Total energy + Delta-G solvation = -3719.818016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -39.89396 -39.26879 -37.58403 -35.20047 -34.04094 -32.96864 -32.40476 -31.25799 -29.28530 -27.40642 -26.47862 -25.46222 -24.75164 -23.71607 -22.22606 -20.78517 -20.52753 -20.08233 -17.80965 -17.16782 -16.56877 -16.28783 -16.12840 -15.75179 -15.40271 -15.14785 -15.05315 -14.78353 -14.67745 -14.30339 -14.05009 -13.80173 -13.56226 -13.16402 -13.07757 -12.95060 -12.75655 -12.58975 -12.55006 -12.38180 -11.78610 -11.73894 -11.55179 -11.41444 -11.10172 -11.07107 -11.04392 -11.00543 -10.99581 -10.74337 -10.64839 -9.81531 -9.78783 -9.35519 -9.04735 -8.82633 -8.72893 -8.20554 -6.47188 -6.19382 -3.89671 3.06399 3.15674 3.24083 3.29560 3.33760 3.36394 3.61507 3.87843 4.22809 4.27918 4.33624 4.38371 4.52896 4.62987 4.65355 4.68948 4.75436 4.79148 4.95226 5.04495 5.13561 5.15746 5.19240 5.21064 5.24733 5.30242 5.40579 5.41510 5.44481 5.45479 5.53502 5.56562 5.62036 5.66660 5.71866 5.78599 5.79350 5.93208 6.02635 6.10105 6.17806 6.60401 6.70368 6.89043 7.04577 7.61879 7.77046 8.37574 8.67201 9.25924 10.88082 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.038185 B = 0.001471 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.103564 B =19026.534814 C =19386.513198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 H 0.088 0.912 4 C 0.067 3.933 5 N -0.681 5.681 6 C 0.065 3.935 7 C 0.095 3.905 8 H 0.055 0.945 9 C -0.152 4.152 10 C -0.122 4.122 11 C -0.158 4.158 12 C 0.059 3.941 13 O -0.361 6.361 14 C 0.127 3.873 15 N -0.737 5.737 16 C 0.531 3.469 17 O -0.519 6.519 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.339 0.661 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.398 0.602 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.708 3.665 -34.960 35.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.120 4.120 3 H 0.106 0.894 4 C -0.063 4.063 5 N -0.312 5.312 6 C -0.064 4.064 7 C 0.036 3.964 8 H 0.072 0.928 9 C -0.190 4.190 10 C -0.159 4.159 11 C -0.196 4.196 12 C -0.018 4.018 13 O -0.279 6.279 14 C 0.002 3.998 15 N -0.392 5.392 16 C 0.317 3.683 17 O -0.394 6.394 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.158 0.842 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.111 0.889 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.232 0.768 47 H 0.108 0.892 48 H 0.107 0.893 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.895 2.293 -34.441 34.638 hybrid contribution -2.189 1.495 0.296 2.668 sum -5.084 3.789 -34.145 34.729 Atomic orbital electron populations 1.21886 0.94879 1.02027 1.02023 1.21360 0.96254 1.01163 0.93260 0.89371 1.21899 1.01118 0.94374 0.88893 1.60388 1.19578 1.50241 1.01005 1.21979 1.01905 0.94132 0.88376 1.22069 0.95850 0.84661 0.93798 0.92751 1.22196 1.02805 0.99073 0.94909 1.21570 1.00413 0.95829 0.98123 1.22215 1.01627 0.97136 0.98604 1.22561 0.99605 0.93602 0.86023 1.88077 1.67753 1.26014 1.46064 1.21238 1.00071 0.95217 0.83247 1.45982 1.59536 1.28117 1.05515 1.20298 0.78706 0.85469 0.83836 1.90699 1.38490 1.23938 1.86241 1.23530 1.04744 1.03480 0.98641 1.85391 1.72841 1.33004 0.92193 1.22878 1.41453 1.11241 0.92808 0.90932 1.24989 0.94843 0.95806 0.97918 1.70019 1.37498 1.24662 1.18137 0.86170 0.78651 0.80429 0.80263 1.20290 1.20755 1.19698 0.92097 0.92408 0.92623 0.94890 0.90453 0.84245 0.89957 0.93777 0.90780 0.90927 0.91891 0.91435 0.91012 0.91012 0.93460 0.88882 0.91755 0.91562 0.76822 0.89227 0.89282 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.84 37.16 0.33 -0.82 16 2 C -0.10 -0.87 2.63 -90.62 -0.24 -1.11 16 3 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.07 0.54 5.14 -3.82 -0.02 0.52 16 5 N -0.68 -5.30 6.45 -113.78 -0.73 -6.04 16 6 C 0.07 0.45 5.35 -3.82 -0.02 0.43 16 7 C 0.09 0.63 2.82 -26.68 -0.08 0.55 16 8 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 9 C -0.15 -0.80 5.42 -26.59 -0.14 -0.94 16 10 C -0.12 -0.57 6.03 -26.55 -0.16 -0.73 16 11 C -0.16 -0.79 6.14 -26.59 -0.16 -0.95 16 12 C 0.06 0.37 6.84 37.21 0.25 0.62 16 13 O -0.36 -3.17 10.35 -35.23 -0.36 -3.53 16 14 C 0.13 1.50 5.06 -4.04 -0.02 1.48 16 15 N -0.74 -10.02 5.28 -60.30 -0.32 -10.34 16 16 C 0.53 10.12 7.85 -10.99 -0.09 10.03 16 17 O -0.52 -12.06 15.86 5.55 0.09 -11.97 16 18 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 20 C -0.54 -15.42 9.50 30.94 0.29 -15.12 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 24 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.06 0.48 7.18 -51.93 -0.37 0.11 16 29 H 0.06 0.38 6.68 -51.93 -0.35 0.03 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.34 2.33 6.98 -39.29 -0.27 2.06 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.40 4.29 7.65 -40.82 -0.31 3.98 16 47 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 48 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 49 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 405.20 15.07 6.11 6.11 Total: -1.00 -34.94 405.20 -10.53 -45.48 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.88 Total: 0.24 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 0.07 Total: -6.95 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.32 Total: -42.02 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.28 Total: -15.51 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.94 -10.53 -45.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617195.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.684 kcal (2) G-P(sol) polarization free energy of solvation -34.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds