Wall clock time and date at job start Tue Mar 31 2020 17:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47290 * 2 1 4 4 C 1.53004 * 109.47245 * 240.00131 * 2 1 3 5 5 N 1.46901 * 109.46916 * 64.99745 * 4 2 1 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.52993 * 109.47039 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.48309 * 304.99904 * 7 6 5 9 9 C 1.53098 * 109.48237 * 184.98042 * 7 6 5 10 10 C 1.53176 * 109.16398 * 182.41998 * 9 7 6 11 11 C 1.53182 * 109.04743 * 56.96158 * 10 9 7 12 12 C 1.53096 * 109.16014 * 303.02290 * 11 10 9 13 13 O 1.42901 * 109.48283 * 65.02156 * 7 6 5 14 14 C 1.52999 * 109.47316 * 120.00283 * 2 1 3 15 15 N 1.46496 * 109.47060 * 294.99844 * 14 2 1 16 16 C 1.34771 * 120.00172 * 179.97438 * 15 14 2 17 17 O 1.21285 * 120.00169 * 0.02562 * 16 15 14 18 18 C 1.50704 * 120.00333 * 180.02562 * 16 15 14 19 19 S 1.80995 * 109.47328 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99959 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00115 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00021 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99986 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99966 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47014 * 89.99634 * 24 22 20 26 26 H 1.48492 * 109.46829 * 209.99721 * 24 22 20 27 27 H 1.48496 * 109.46925 * 329.99743 * 24 22 20 28 28 H 1.08993 * 109.46950 * 299.99341 * 1 2 3 29 29 H 1.08997 * 109.47303 * 60.00055 * 1 2 3 30 30 H 1.09007 * 109.46679 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46889 * 305.00126 * 4 2 1 32 32 H 1.08995 * 109.47384 * 184.99766 * 4 2 1 33 33 H 1.00901 * 111.00067 * 303.95263 * 5 4 2 34 34 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 35 35 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 36 36 H 1.09004 * 109.51729 * 302.31425 * 9 7 6 37 37 H 1.08997 * 109.52151 * 62.49871 * 9 7 6 38 38 H 1.08997 * 109.53468 * 297.09058 * 10 9 7 39 39 H 1.09000 * 109.54510 * 176.83125 * 10 9 7 40 40 H 1.08996 * 109.52388 * 183.12052 * 11 10 9 41 41 H 1.09002 * 109.52457 * 62.92921 * 11 10 9 42 42 H 1.08998 * 109.48592 * 297.62817 * 12 11 10 43 43 H 1.09002 * 109.48011 * 177.58802 * 12 11 10 44 44 H 1.08996 * 109.47107 * 55.00079 * 14 2 1 45 45 H 1.09000 * 109.47382 * 175.00077 * 14 2 1 46 46 H 0.97007 * 120.00066 * 0.02562 * 15 14 2 47 47 H 1.09004 * 109.46509 * 300.00204 * 18 16 15 48 48 H 1.09000 * 109.47393 * 59.99870 * 18 16 15 49 49 H 0.96996 * 120.00039 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 1.6514 0.0375 -2.4456 6 6 2.1248 -0.6271 -3.6673 7 6 1.7024 0.1910 -4.8892 8 1 0.6235 0.3449 -4.8685 9 6 2.0861 -0.5624 -6.1655 10 6 1.7150 0.2897 -7.3832 11 6 2.4166 1.6471 -7.2760 12 6 2.0197 2.3151 -5.9568 13 8 2.3648 1.4570 -4.8673 14 6 2.0401 -0.7213 1.2492 15 7 1.6526 0.0352 2.4423 16 6 1.9957 -0.4137 3.6659 17 8 2.6257 -1.4439 3.7792 18 6 1.5966 0.3642 4.8933 19 16 2.2000 -0.4889 6.3711 20 6 1.6107 0.6066 7.6190 21 1 1.0586 1.4928 7.3428 22 6 1.8569 0.3312 8.9570 23 7 2.5302 -0.7486 9.2936 24 14 1.2315 1.4923 10.2800 25 1 -0.1301 1.0751 10.7013 26 1 2.1463 1.4494 11.4488 27 1 1.1810 2.8752 9.7413 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.6054 -1.7198 -1.2952 32 1 3.1263 -0.7994 -1.2057 33 1 0.6528 0.1793 -2.4753 34 1 3.2116 -0.7050 -3.6406 35 1 1.6904 -1.6248 -3.7297 36 1 3.1595 -0.7524 -6.1675 37 1 1.5476 -1.5092 -6.2054 38 1 0.6355 0.4381 -7.4088 39 1 2.0366 -0.2160 -8.2937 40 1 2.1144 2.2803 -8.1101 41 1 3.4966 1.5020 -7.3003 42 1 0.9450 2.4967 -5.9501 43 1 2.5493 3.2623 -5.8552 44 1 1.6055 -1.7198 1.2950 45 1 3.1264 -0.7995 1.2055 46 1 1.1483 0.8590 2.3518 47 1 2.0312 1.3628 4.8477 48 1 0.5102 0.4425 4.9367 49 1 2.7020 -0.9412 10.2286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753617195.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:18 Heat of formation + Delta-G solvation = -133.252634 kcal Electronic energy + Delta-G solvation = -25007.238294 eV Core-core repulsion = 21286.332206 eV Total energy + Delta-G solvation = -3720.906088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.70216 -40.35221 -38.43164 -36.13668 -34.57974 -34.49446 -33.93198 -31.97264 -30.70545 -27.97437 -27.75121 -27.20483 -25.37448 -24.36174 -22.75346 -21.79412 -21.31338 -20.95570 -19.78749 -17.89594 -17.66210 -17.32477 -16.97017 -16.87295 -16.74041 -16.29702 -16.00656 -15.75813 -15.51710 -15.35060 -15.11004 -14.71985 -14.56029 -14.28406 -14.15151 -13.95456 -13.56325 -13.44807 -13.30956 -13.15908 -13.12950 -12.90308 -12.85990 -12.61620 -12.17419 -12.08527 -11.95309 -11.84863 -11.74779 -11.71322 -11.52397 -11.14749 -11.13582 -10.94008 -10.29868 -10.27048 -10.10219 -9.32581 -8.66217 -8.33976 -6.12229 1.27759 1.43239 1.47829 1.58471 1.62464 2.26390 2.30421 2.89021 3.00210 3.12415 3.33680 3.82330 3.86772 3.91555 3.94493 3.98171 4.01584 4.05979 4.10823 4.25517 4.30406 4.32336 4.49552 4.51747 4.53786 4.54336 4.61183 4.71365 4.75736 4.79888 4.81284 4.89007 4.96703 4.98689 5.02623 5.07400 5.14032 5.21182 5.26716 5.37068 5.39426 5.42534 5.48765 6.02533 6.20539 6.39281 6.50545 6.53402 7.07279 7.25588 8.75338 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.038185 B = 0.001471 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.103564 B =19026.534814 C =19386.513198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 H 0.088 0.912 4 C 0.071 3.929 5 N -0.688 5.688 6 C 0.066 3.934 7 C 0.094 3.906 8 H 0.060 0.940 9 C -0.149 4.149 10 C -0.122 4.122 11 C -0.156 4.156 12 C 0.054 3.946 13 O -0.389 6.389 14 C 0.127 3.873 15 N -0.710 5.710 16 C 0.532 3.468 17 O -0.568 6.568 18 C -0.130 4.130 19 S -0.153 6.153 20 C -0.547 4.547 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.258 1.258 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.345 0.655 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.415 0.585 47 H 0.109 0.891 48 H 0.111 0.889 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.532 5.400 -36.403 37.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 H 0.106 0.894 4 C -0.059 4.059 5 N -0.320 5.320 6 C -0.063 4.063 7 C 0.036 3.964 8 H 0.078 0.922 9 C -0.188 4.188 10 C -0.159 4.159 11 C -0.193 4.193 12 C -0.023 4.023 13 O -0.308 6.308 14 C 0.002 3.998 15 N -0.364 5.364 16 C 0.318 3.682 17 O -0.447 6.447 18 C -0.281 4.281 19 S 0.075 5.925 20 C -0.695 4.695 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.182 1.182 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.165 0.835 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.113 0.887 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.253 0.747 47 H 0.127 0.873 48 H 0.129 0.871 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.750 4.066 -35.944 36.483 hybrid contribution -1.623 0.967 0.591 1.980 sum -6.373 5.033 -35.352 36.273 Atomic orbital electron populations 1.21878 0.93667 1.02238 1.02808 1.21216 0.97061 1.00549 0.91719 0.89377 1.21803 1.00593 0.94632 0.88842 1.60352 1.20126 1.50463 1.01075 1.21991 1.01188 0.94905 0.88239 1.22134 0.95967 0.84131 0.94155 0.92162 1.22178 1.02421 0.99591 0.94569 1.21593 1.00742 0.95505 0.98099 1.22191 1.01118 0.97603 0.98416 1.22687 1.00054 0.93505 0.86028 1.88031 1.68484 1.27022 1.47264 1.21364 0.99577 0.95245 0.83571 1.45732 1.57962 1.28373 1.04318 1.20078 0.78477 0.84734 0.84911 1.90689 1.40994 1.26015 1.86964 1.23375 1.05759 1.03323 0.95615 1.85577 1.74328 1.35867 0.96776 1.23218 1.41555 1.11423 0.93320 0.89879 1.26130 0.94755 0.97576 1.00623 1.70185 1.38947 1.26850 1.18818 0.84946 0.78142 0.78254 0.76584 1.19260 1.20299 1.18204 0.92108 0.90849 0.92717 0.94336 0.91386 0.83506 0.91272 0.92373 0.91648 0.89697 0.91272 0.90659 0.89655 0.91905 0.92803 0.88747 0.92363 0.92638 0.74730 0.87260 0.87115 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.84 71.98 0.64 -1.26 16 2 C -0.09 -1.33 2.63 -10.79 -0.03 -1.36 16 3 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 4 C 0.07 1.05 5.14 86.30 0.44 1.49 16 5 N -0.69 -9.69 6.45 -513.88 -3.31 -13.00 16 6 C 0.07 0.84 5.35 86.30 0.46 1.30 16 7 C 0.09 1.14 2.82 30.62 0.09 1.22 16 8 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 9 C -0.15 -1.38 5.42 30.69 0.17 -1.21 16 10 C -0.12 -0.94 6.03 30.71 0.19 -0.76 16 11 C -0.16 -1.37 6.14 30.69 0.19 -1.18 16 12 C 0.05 0.62 6.84 72.01 0.49 1.11 16 13 O -0.39 -6.55 10.35 -148.98 -1.54 -8.09 16 14 C 0.13 2.86 5.06 86.38 0.44 3.30 16 15 N -0.71 -18.19 5.28 -463.07 -2.45 -20.64 16 16 C 0.53 20.01 7.85 87.66 0.69 20.70 16 17 O -0.57 -26.92 15.86 -3.05 -0.05 -26.97 16 18 C -0.13 -5.19 6.16 71.24 0.44 -4.76 16 19 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 20 C -0.55 -31.53 9.50 67.96 0.65 -30.88 16 21 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 22 C 0.01 0.79 5.49 84.86 0.47 1.26 16 23 N -0.91 -56.41 13.22 21.65 0.29 -56.13 16 24 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 28 H 0.06 0.79 7.18 -2.39 -0.02 0.77 16 29 H 0.07 0.74 6.68 -2.39 -0.02 0.72 16 30 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.35 4.01 6.98 -89.69 -0.63 3.38 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.06 0.71 8.14 -2.38 -0.02 0.70 16 37 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.42 7.85 7.65 -92.70 -0.71 7.14 16 47 H 0.11 3.95 8.14 -2.39 -0.02 3.94 16 48 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 49 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -77.44 405.20 -1.30 -78.74 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -0.41 Total: 21.01 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 5.31 Total: -11.01 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -5.47 Total: -89.77 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -1.59 Total: -35.06 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -77.44 -1.30 -78.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617195.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.511 kcal (2) G-P(sol) polarization free energy of solvation -77.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds