Wall clock time and date at job start Tue Mar 31 2020 17:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 N 1.46898 * 109.47386 * 295.00452 * 4 2 1 6 6 C 1.46901 * 111.00283 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47024 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.48584 * 304.99921 * 7 6 5 9 9 C 1.53099 * 109.47841 * 184.97578 * 7 6 5 10 10 C 1.53174 * 109.16156 * 182.42215 * 9 7 6 11 11 C 1.53184 * 109.04829 * 56.96586 * 10 9 7 12 12 C 1.53095 * 109.15830 * 303.02476 * 11 10 9 13 13 O 1.42904 * 109.47853 * 65.02563 * 7 6 5 14 14 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 15 15 N 1.46505 * 109.47119 * 65.00050 * 14 2 1 16 16 C 1.34782 * 120.00001 * 179.97438 * 15 14 2 17 17 O 1.21278 * 119.99688 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99764 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.46992 * 179.97438 * 18 16 15 20 20 C 1.76191 * 99.99976 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00579 * 359.97438 * 20 19 18 22 22 C 1.38804 * 120.00162 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00381 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99745 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47143 * 89.99780 * 24 22 20 26 26 H 1.48503 * 109.46881 * 210.00082 * 24 22 20 27 27 H 1.48504 * 109.46877 * 329.99909 * 24 22 20 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 32 32 H 1.09004 * 109.46881 * 174.99844 * 4 2 1 33 33 H 1.00895 * 111.00039 * 56.04185 * 5 4 2 34 34 H 1.08993 * 109.46846 * 299.99851 * 6 5 4 35 35 H 1.09002 * 109.46761 * 59.99969 * 6 5 4 36 36 H 1.09001 * 109.52199 * 302.31904 * 9 7 6 37 37 H 1.08997 * 109.51919 * 62.50559 * 9 7 6 38 38 H 1.09005 * 109.53616 * 297.09952 * 10 9 7 39 39 H 1.09001 * 109.54818 * 176.83717 * 10 9 7 40 40 H 1.08995 * 109.52561 * 183.11713 * 11 10 9 41 41 H 1.09000 * 109.56966 * 62.95961 * 11 10 9 42 42 H 1.08993 * 109.48304 * 297.62364 * 12 11 10 43 43 H 1.09000 * 109.47690 * 177.58595 * 12 11 10 44 44 H 1.09000 * 109.47278 * 184.99561 * 14 2 1 45 45 H 1.08994 * 109.47510 * 305.00071 * 14 2 1 46 46 H 0.97002 * 120.00209 * 359.97438 * 15 14 2 47 47 H 1.09000 * 109.47421 * 299.99792 * 18 16 15 48 48 H 1.09004 * 109.46940 * 59.99787 * 18 16 15 49 49 H 0.96997 * 120.00089 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6514 0.0373 2.4456 6 6 2.1247 -0.6273 3.6672 7 6 1.7023 0.1907 4.8892 8 1 2.0625 1.2140 4.7839 9 6 2.3002 -0.4335 6.1529 10 6 1.8238 0.3548 7.3767 11 6 0.2922 0.3630 7.4009 12 6 -0.2279 0.9566 6.0890 13 8 0.2769 0.1952 4.9900 14 6 2.0401 -0.7212 -1.2492 15 7 1.6525 0.0355 -2.4424 16 6 1.9965 -0.4128 -3.6660 17 8 2.6273 -1.4425 -3.7792 18 6 1.5973 0.3653 -4.8933 19 16 2.2021 -0.4870 -6.3711 20 6 1.6125 0.6084 -7.6188 21 1 1.0590 1.4937 -7.3427 22 6 1.8586 0.3331 -8.9569 23 7 1.4177 1.1512 -9.8890 24 14 2.8142 -1.1992 -9.4347 25 1 1.8712 -2.3292 -9.6324 26 1 3.5557 -0.9467 -10.6964 27 1 3.7755 -1.5397 -8.3553 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6055 -1.7199 1.2951 32 1 3.1264 -0.7995 1.2055 33 1 0.6529 0.1791 2.4753 34 1 1.6904 -1.6250 3.7296 35 1 3.2116 -0.7052 3.6405 36 1 1.9729 -1.4698 6.2372 37 1 3.3881 -0.3976 6.0971 38 1 2.1930 1.3787 7.3172 39 1 2.2002 -0.1177 8.2840 40 1 -0.0557 0.9685 8.2378 41 1 -0.0767 -0.6567 7.5109 42 1 0.1071 1.9899 5.9995 43 1 -1.3174 0.9255 6.0827 44 1 3.1264 -0.7993 -1.2057 45 1 1.6055 -1.7197 -1.2953 46 1 1.1483 0.8592 -2.3518 47 1 0.5110 0.4426 -4.9371 48 1 2.0312 1.3642 -4.8472 49 1 1.5894 0.9586 -10.8241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617197.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:36 Heat of formation + Delta-G solvation = -110.600569 kcal Electronic energy + Delta-G solvation = -25071.867266 eV Core-core repulsion = 21351.943446 eV Total energy + Delta-G solvation = -3719.923821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.97754 -39.38070 -37.61792 -35.24368 -34.12372 -33.03988 -32.42036 -31.30455 -29.42235 -27.42556 -26.54607 -25.59429 -24.84887 -23.73659 -22.21561 -20.80985 -20.59931 -20.17725 -17.84325 -17.09185 -16.69336 -16.36723 -16.27342 -15.97971 -15.50781 -15.21795 -14.95711 -14.94492 -14.71855 -14.33035 -14.00633 -13.84064 -13.59172 -13.26985 -13.17037 -13.00755 -12.81416 -12.75808 -12.60345 -12.29901 -11.93765 -11.77864 -11.61276 -11.46496 -11.24896 -11.13530 -11.10646 -11.03587 -10.98926 -10.74707 -10.56444 -9.90829 -9.83768 -9.48904 -8.99629 -8.91668 -8.79117 -8.47718 -6.89571 -6.27172 -3.98649 2.79314 3.02311 3.28615 3.31183 3.35373 3.52298 3.60986 3.81846 4.24679 4.31879 4.34735 4.35008 4.52537 4.59491 4.63722 4.66797 4.71218 4.77097 4.79443 4.93178 5.06503 5.11970 5.15604 5.20077 5.22679 5.25658 5.30444 5.36723 5.38744 5.40795 5.42663 5.50962 5.59003 5.61712 5.65559 5.72966 5.76521 5.81050 5.98943 6.04176 6.06156 6.55353 6.63625 6.77674 7.04680 7.66010 7.95905 8.43502 8.53783 9.19144 10.82079 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.046400 B = 0.001499 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.309134 B =18676.649255 C =19052.943664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 H 0.087 0.913 4 C 0.066 3.934 5 N -0.688 5.688 6 C 0.067 3.933 7 C 0.091 3.909 8 H 0.068 0.932 9 C -0.150 4.150 10 C -0.122 4.122 11 C -0.158 4.158 12 C 0.063 3.937 13 O -0.381 6.381 14 C 0.127 3.873 15 N -0.735 5.735 16 C 0.530 3.470 17 O -0.521 6.521 18 C -0.124 4.124 19 S -0.142 6.142 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.349 0.651 34 H 0.038 0.962 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.399 0.601 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.772 -0.219 36.853 36.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.120 4.120 3 H 0.106 0.894 4 C -0.064 4.064 5 N -0.321 5.321 6 C -0.062 4.062 7 C 0.033 3.967 8 H 0.086 0.914 9 C -0.189 4.189 10 C -0.160 4.160 11 C -0.195 4.195 12 C -0.014 4.014 13 O -0.300 6.300 14 C 0.002 3.998 15 N -0.389 5.389 16 C 0.316 3.684 17 O -0.396 6.396 18 C -0.275 4.275 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.169 0.831 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.234 0.766 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.310 -1.577 36.304 36.339 hybrid contribution -1.134 0.471 0.044 1.229 sum -1.444 -1.106 36.348 36.394 Atomic orbital electron populations 1.21892 0.94707 1.02167 1.02136 1.21359 0.96433 1.01030 0.93203 0.89440 1.21892 1.00874 0.94671 0.88962 1.60484 1.20897 1.49700 1.00974 1.21966 1.00482 0.95475 0.88304 1.22166 0.81297 0.99512 0.93699 0.91403 1.22177 1.01171 1.00589 0.94929 1.21574 0.95537 1.00669 0.98190 1.22203 0.96342 1.02448 0.98548 1.22538 0.99098 0.94246 0.85512 1.87894 1.20648 1.72703 1.48777 1.21254 1.00036 0.95263 0.83200 1.45950 1.59350 1.28171 1.05457 1.20270 0.78779 0.85455 0.83929 1.90695 1.38629 1.23997 1.86276 1.23280 1.05017 1.03005 0.96171 1.84779 1.74050 1.35992 0.96788 1.22327 1.41345 1.11301 0.91943 0.89394 1.24708 0.94606 0.96700 0.95247 1.69936 1.44456 1.36630 1.00715 0.86736 0.81810 0.83278 0.80033 1.19220 1.19947 1.15923 0.92576 0.92189 0.92111 0.94753 0.90600 0.83074 0.94372 0.89636 0.91050 0.90671 0.91719 0.91417 0.90914 0.91101 0.93123 0.88912 0.91546 0.91671 0.76644 0.88534 0.88463 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.84 37.16 0.33 -0.84 16 2 C -0.10 -0.83 2.63 -90.62 -0.24 -1.07 16 3 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.07 0.51 5.14 -3.83 -0.02 0.49 16 5 N -0.69 -5.26 6.50 -113.78 -0.74 -6.00 16 6 C 0.07 0.45 5.39 -3.83 -0.02 0.43 16 7 C 0.09 0.59 2.88 -26.68 -0.08 0.51 16 8 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 9 C -0.15 -0.77 5.42 -26.59 -0.14 -0.91 16 10 C -0.12 -0.55 6.03 -26.55 -0.16 -0.71 16 11 C -0.16 -0.72 6.14 -26.59 -0.16 -0.88 16 12 C 0.06 0.35 6.84 37.21 0.25 0.60 16 13 O -0.38 -2.92 9.93 -35.23 -0.35 -3.27 16 14 C 0.13 1.41 5.06 -4.04 -0.02 1.39 16 15 N -0.73 -9.42 5.28 -60.29 -0.32 -9.74 16 16 C 0.53 9.54 7.85 -10.98 -0.09 9.45 16 17 O -0.52 -11.43 15.86 5.56 0.09 -11.35 16 18 C -0.12 -2.43 6.16 36.01 0.22 -2.20 16 19 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 20 C -0.52 -15.16 10.04 30.94 0.31 -14.85 16 21 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 22 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 23 N -0.88 -26.72 13.97 55.49 0.78 -25.95 16 24 Si 0.86 21.95 27.74 -169.99 -4.72 17.23 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.42 6.68 -51.93 -0.35 0.07 16 30 H 0.06 0.48 7.18 -51.93 -0.37 0.10 16 31 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.35 2.76 6.54 -39.29 -0.26 2.50 16 34 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.40 4.04 7.65 -40.82 -0.31 3.73 16 47 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 48 H 0.10 1.77 8.14 -51.91 -0.42 1.34 16 49 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 401.79 15.07 6.05 6.05 Total: -1.00 -34.00 401.79 -10.01 -44.01 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -8.90 Total: 0.51 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 0.09 Total: -5.86 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: -0.28 Total: -41.69 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.26 Total: -14.61 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.72 Total: 17.23 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.00 -10.01 -44.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617197.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.592 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds