Wall clock time and date at job start Tue Mar 31 2020 17:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 N 1.46898 * 109.47386 * 295.00452 * 4 2 1 6 6 C 1.46901 * 111.00283 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47024 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.48584 * 304.99921 * 7 6 5 9 9 C 1.53099 * 109.47841 * 184.97578 * 7 6 5 10 10 C 1.53174 * 109.16156 * 182.42215 * 9 7 6 11 11 C 1.53184 * 109.04829 * 56.96586 * 10 9 7 12 12 C 1.53095 * 109.15830 * 303.02476 * 11 10 9 13 13 O 1.42904 * 109.47853 * 65.02563 * 7 6 5 14 14 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 15 15 N 1.46505 * 109.47119 * 65.00050 * 14 2 1 16 16 C 1.34782 * 120.00001 * 179.97438 * 15 14 2 17 17 O 1.21278 * 119.99688 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99764 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.46992 * 179.97438 * 18 16 15 20 20 C 1.76191 * 99.99976 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00579 * 359.97438 * 20 19 18 22 22 C 1.38804 * 120.00162 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00381 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99745 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47143 * 89.99780 * 24 22 20 26 26 H 1.48503 * 109.46881 * 210.00082 * 24 22 20 27 27 H 1.48504 * 109.46877 * 329.99909 * 24 22 20 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 32 32 H 1.09004 * 109.46881 * 174.99844 * 4 2 1 33 33 H 1.00895 * 111.00039 * 56.04185 * 5 4 2 34 34 H 1.08993 * 109.46846 * 299.99851 * 6 5 4 35 35 H 1.09002 * 109.46761 * 59.99969 * 6 5 4 36 36 H 1.09001 * 109.52199 * 302.31904 * 9 7 6 37 37 H 1.08997 * 109.51919 * 62.50559 * 9 7 6 38 38 H 1.09005 * 109.53616 * 297.09952 * 10 9 7 39 39 H 1.09001 * 109.54818 * 176.83717 * 10 9 7 40 40 H 1.08995 * 109.52561 * 183.11713 * 11 10 9 41 41 H 1.09000 * 109.56966 * 62.95961 * 11 10 9 42 42 H 1.08993 * 109.48304 * 297.62364 * 12 11 10 43 43 H 1.09000 * 109.47690 * 177.58595 * 12 11 10 44 44 H 1.09000 * 109.47278 * 184.99561 * 14 2 1 45 45 H 1.08994 * 109.47510 * 305.00071 * 14 2 1 46 46 H 0.97002 * 120.00209 * 359.97438 * 15 14 2 47 47 H 1.09000 * 109.47421 * 299.99792 * 18 16 15 48 48 H 1.09004 * 109.46940 * 59.99787 * 18 16 15 49 49 H 0.96997 * 120.00089 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6514 0.0373 2.4456 6 6 2.1247 -0.6273 3.6672 7 6 1.7023 0.1907 4.8892 8 1 2.0625 1.2140 4.7839 9 6 2.3002 -0.4335 6.1529 10 6 1.8238 0.3548 7.3767 11 6 0.2922 0.3630 7.4009 12 6 -0.2279 0.9566 6.0890 13 8 0.2769 0.1952 4.9900 14 6 2.0401 -0.7212 -1.2492 15 7 1.6525 0.0355 -2.4424 16 6 1.9965 -0.4128 -3.6660 17 8 2.6273 -1.4425 -3.7792 18 6 1.5973 0.3653 -4.8933 19 16 2.2021 -0.4870 -6.3711 20 6 1.6125 0.6084 -7.6188 21 1 1.0590 1.4937 -7.3427 22 6 1.8586 0.3331 -8.9569 23 7 1.4177 1.1512 -9.8890 24 14 2.8142 -1.1992 -9.4347 25 1 1.8712 -2.3292 -9.6324 26 1 3.5557 -0.9467 -10.6964 27 1 3.7755 -1.5397 -8.3553 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6055 -1.7199 1.2951 32 1 3.1264 -0.7995 1.2055 33 1 0.6529 0.1791 2.4753 34 1 1.6904 -1.6250 3.7296 35 1 3.2116 -0.7052 3.6405 36 1 1.9729 -1.4698 6.2372 37 1 3.3881 -0.3976 6.0971 38 1 2.1930 1.3787 7.3172 39 1 2.2002 -0.1177 8.2840 40 1 -0.0557 0.9685 8.2378 41 1 -0.0767 -0.6567 7.5109 42 1 0.1071 1.9899 5.9995 43 1 -1.3174 0.9255 6.0827 44 1 3.1264 -0.7993 -1.2057 45 1 1.6055 -1.7197 -1.2953 46 1 1.1483 0.8592 -2.3518 47 1 0.5110 0.4426 -4.9371 48 1 2.0312 1.3642 -4.8472 49 1 1.5894 0.9586 -10.8241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753617197.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:32 Heat of formation + Delta-G solvation = -134.755266 kcal Electronic energy + Delta-G solvation = -25072.914693 eV Core-core repulsion = 21351.943446 eV Total energy + Delta-G solvation = -3720.971247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.74172 -40.40637 -38.42699 -36.13170 -34.66994 -34.54454 -33.94879 -31.99469 -30.76726 -27.98089 -27.89418 -27.28517 -25.44280 -24.33348 -22.72737 -21.82227 -21.31208 -20.99150 -19.83852 -17.91188 -17.63381 -17.34852 -17.08704 -17.01814 -16.79907 -16.56335 -15.95543 -15.67712 -15.52646 -15.33792 -15.07787 -14.90788 -14.66624 -14.40053 -14.25389 -13.98423 -13.61173 -13.46931 -13.36624 -13.34198 -13.11466 -12.99114 -12.80127 -12.67017 -12.19814 -12.12040 -11.97865 -11.85481 -11.83408 -11.74503 -11.53942 -11.20259 -11.16693 -10.98943 -10.53179 -10.35738 -10.12189 -9.39680 -8.99178 -8.51091 -6.21935 0.99677 1.31876 1.47447 1.56626 1.57698 2.22620 2.27120 2.72282 2.84047 2.87247 3.13086 3.80105 3.83612 3.90723 3.93214 3.95334 3.99202 4.02048 4.14412 4.23856 4.24047 4.31140 4.47904 4.49094 4.53397 4.58551 4.65937 4.69536 4.75947 4.77415 4.81913 4.87530 4.95525 4.97243 5.01584 5.06293 5.13527 5.20881 5.25619 5.35566 5.38613 5.46718 5.71159 6.02020 6.11828 6.32082 6.43433 6.48463 6.94178 7.20312 8.61310 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.046400 B = 0.001499 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.309134 B =18676.649255 C =19052.943664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 H 0.092 0.908 4 C 0.069 3.931 5 N -0.690 5.690 6 C 0.067 3.933 7 C 0.093 3.907 8 H 0.063 0.937 9 C -0.148 4.148 10 C -0.123 4.123 11 C -0.155 4.155 12 C 0.057 3.943 13 O -0.400 6.400 14 C 0.127 3.873 15 N -0.709 5.709 16 C 0.534 3.466 17 O -0.565 6.565 18 C -0.112 4.112 19 S -0.176 6.176 20 C -0.530 4.530 21 H 0.062 0.938 22 C 0.047 3.953 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.262 1.262 26 H -0.259 1.259 27 H -0.237 1.237 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.348 0.652 34 H 0.032 0.968 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.099 0.901 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.416 0.584 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.595 -0.236 38.796 38.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 H 0.110 0.890 4 C -0.061 4.061 5 N -0.322 5.322 6 C -0.062 4.062 7 C 0.035 3.965 8 H 0.081 0.919 9 C -0.186 4.186 10 C -0.160 4.160 11 C -0.193 4.193 12 C -0.019 4.019 13 O -0.320 6.320 14 C 0.003 3.997 15 N -0.363 5.363 16 C 0.319 3.681 17 O -0.443 6.443 18 C -0.263 4.263 19 S 0.050 5.950 20 C -0.678 4.678 21 H 0.081 0.919 22 C -0.159 4.159 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.187 1.187 26 H -0.183 1.183 27 H -0.161 1.161 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.168 0.832 34 H 0.050 0.950 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.117 0.883 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.253 0.747 47 H 0.132 0.868 48 H 0.132 0.868 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.157 -1.553 38.289 38.321 hybrid contribution -1.266 0.566 -0.402 1.444 sum -1.423 -0.987 37.887 37.926 Atomic orbital electron populations 1.21883 0.94104 1.02072 1.02684 1.21224 0.96740 1.00762 0.91851 0.88979 1.21835 1.00901 0.94522 0.88832 1.60498 1.20810 1.49747 1.01169 1.22007 1.00889 0.95158 0.88142 1.22157 0.81006 0.99217 0.94107 0.91892 1.22160 1.01667 1.00205 0.94614 1.21599 0.95486 1.00801 0.98157 1.22185 0.96407 1.02227 0.98484 1.22681 0.99554 0.94260 0.85443 1.87862 1.21236 1.73176 1.49742 1.21374 0.99826 0.95144 0.83327 1.45732 1.57825 1.28413 1.04351 1.19956 0.78598 0.84716 0.84785 1.90686 1.40945 1.25805 1.86903 1.23277 1.05952 1.03138 0.93893 1.84707 1.74676 1.36553 0.99059 1.22471 1.40914 1.11058 0.93323 0.91946 1.25551 0.95501 0.99493 0.95315 1.70012 1.45740 1.38368 1.01356 0.85871 0.80649 0.79781 0.80087 1.18701 1.18278 1.16125 0.93013 0.91237 0.91987 0.94919 0.90503 0.83241 0.94955 0.88859 0.91607 0.89747 0.91424 0.90655 0.89617 0.91749 0.92805 0.88272 0.92061 0.92372 0.74691 0.86826 0.86783 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.84 71.98 0.64 -1.37 16 2 C -0.09 -1.25 2.63 -10.79 -0.03 -1.27 16 3 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 4 C 0.07 0.96 5.14 86.30 0.44 1.40 16 5 N -0.69 -9.53 6.50 -513.90 -3.34 -12.87 16 6 C 0.07 0.83 5.39 86.30 0.46 1.30 16 7 C 0.09 1.10 2.88 30.63 0.09 1.19 16 8 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 9 C -0.15 -1.34 5.42 30.69 0.17 -1.17 16 10 C -0.12 -0.93 6.03 30.71 0.19 -0.74 16 11 C -0.16 -1.21 6.14 30.69 0.19 -1.02 16 12 C 0.06 0.56 6.84 72.01 0.49 1.06 16 13 O -0.40 -5.78 9.93 -148.98 -1.48 -7.26 16 14 C 0.13 2.62 5.06 86.38 0.44 3.06 16 15 N -0.71 -16.69 5.28 -463.06 -2.45 -19.13 16 16 C 0.53 18.44 7.85 87.66 0.69 19.12 16 17 O -0.56 -24.39 15.86 -3.02 -0.05 -24.43 16 18 C -0.11 -4.22 6.16 71.24 0.44 -3.78 16 19 S -0.18 -8.99 18.55 -56.49 -1.05 -10.04 16 20 C -0.53 -31.05 10.04 67.96 0.68 -30.37 16 21 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 22 C 0.05 2.76 5.50 84.86 0.47 3.23 16 23 N -0.92 -56.03 13.97 21.65 0.30 -55.72 16 24 Si 0.91 45.24 27.74 68.60 1.90 47.15 16 25 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 27 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.83 6.68 -2.39 -0.02 0.81 16 30 H 0.06 0.82 7.18 -2.39 -0.02 0.80 16 31 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.35 4.98 6.54 -89.70 -0.59 4.40 16 34 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 36 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.42 7.23 7.65 -92.71 -0.71 6.52 16 47 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 48 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 49 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -72.98 401.79 -1.22 -74.19 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -0.41 Total: 17.47 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 5.35 Total: -9.36 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -5.49 Total: -87.72 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -1.53 Total: -31.69 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.90 Total: 47.15 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.05 Total: -10.04 kcal Total: -72.98 -1.22 -74.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617197.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.562 kcal (2) G-P(sol) polarization free energy of solvation -72.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds