Wall clock time and date at job start Tue Mar 31 2020 16:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00240 * 2 1 4 4 H 1.48499 * 109.47254 * 270.00688 * 3 2 1 5 5 H 1.48507 * 109.46970 * 30.00278 * 3 2 1 6 6 H 1.48500 * 109.47308 * 150.00255 * 3 2 1 7 7 C 1.37881 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99799 * 180.02562 * 7 2 1 9 9 C 1.50689 * 119.99965 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.50741 * 299.94066 * 9 7 2 11 11 C 1.53044 * 109.49926 * 60.00554 * 9 7 2 12 12 C 1.53033 * 109.54412 * 181.31345 * 11 9 7 13 13 C 1.53199 * 109.34014 * 298.62005 * 12 11 9 14 14 N 1.46994 * 108.73590 * 54.61732 * 13 12 11 15 15 C 1.34778 * 120.61405 * 126.39024 * 14 13 12 16 16 O 1.21280 * 120.00477 * 174.34342 * 15 14 13 17 17 C 1.50704 * 119.99792 * 354.34496 * 15 14 13 18 18 H 1.09000 * 109.50355 * 315.99825 * 17 15 14 19 19 C 1.53122 * 109.50025 * 76.11651 * 17 15 14 20 20 C 1.53124 * 109.15845 * 177.59216 * 19 17 15 21 21 C 1.53029 * 109.27943 * 302.34893 * 20 19 17 22 22 N 1.46844 * 109.52657 * 59.17827 * 21 20 19 23 23 C 1.46902 * 110.99758 * 174.16098 * 22 21 20 24 24 C 1.52997 * 109.47439 * 47.17127 * 23 22 21 25 25 F 1.39906 * 109.46888 * 294.08311 * 24 23 22 26 26 F 1.39899 * 109.47410 * 54.08096 * 24 23 22 27 27 C 1.46846 * 111.19492 * 298.25707 * 22 21 20 28 28 C 1.46927 * 118.75926 * 306.40965 * 14 13 12 29 29 H 0.97007 * 119.99866 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.45943 * 61.28833 * 11 9 7 31 31 H 1.09007 * 109.44757 * 301.32964 * 11 9 7 32 32 H 1.08999 * 109.49825 * 58.58060 * 12 11 9 33 33 H 1.08997 * 109.50291 * 178.65128 * 12 11 9 34 34 H 1.08994 * 109.58453 * 174.43270 * 13 12 11 35 35 H 1.08995 * 109.58386 * 294.85924 * 13 12 11 36 36 H 1.09001 * 109.52428 * 297.49991 * 19 17 15 37 37 H 1.08995 * 109.52576 * 57.69163 * 19 17 15 38 38 H 1.08998 * 109.50272 * 182.39886 * 20 19 17 39 39 H 1.09006 * 109.53127 * 62.30917 * 20 19 17 40 40 H 1.09003 * 109.46195 * 299.15779 * 21 20 19 41 41 H 1.09002 * 109.45429 * 179.19363 * 21 20 19 42 42 H 1.09007 * 109.46732 * 167.16605 * 23 22 21 43 43 H 1.09001 * 109.47345 * 287.16314 * 23 22 21 44 44 H 1.08995 * 109.47421 * 174.08768 * 24 23 22 45 45 H 1.09001 * 109.46482 * 301.72480 * 27 22 21 46 46 H 1.09005 * 109.44841 * 181.75256 * 27 22 21 47 47 H 1.08998 * 109.58669 * 293.82824 * 28 14 13 48 48 H 1.08996 * 109.58614 * 173.39610 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6253 -2.5581 0.8900 11 6 0.3705 -2.5806 -1.2497 12 6 -0.4199 -3.8909 -1.2343 13 6 0.5555 -5.0721 -1.2533 14 7 1.4996 -4.9228 -0.1365 15 6 1.6769 -5.9218 0.7506 16 8 2.5311 -5.8285 1.6065 17 6 0.8137 -7.1551 0.6789 18 1 -0.2243 -6.8639 0.5183 19 6 1.2823 -8.0404 -0.4792 20 6 0.4395 -9.3185 -0.5076 21 6 0.5649 -10.0365 0.8380 22 7 0.1038 -9.1486 1.9129 23 6 0.0796 -9.8517 3.2024 24 6 1.3932 -10.6125 3.3934 25 9 1.4851 -11.6311 2.4387 26 9 2.4690 -9.7314 3.2402 27 6 0.9284 -7.9359 1.9901 28 6 2.2459 -3.6640 -0.0052 29 1 -0.4850 0.8401 0.0004 30 1 0.9988 -2.5459 -2.1397 31 1 -0.3220 -1.7389 -1.2611 32 1 -1.0297 -3.9373 -0.3320 33 1 -1.0645 -3.9374 -2.1119 34 1 0.0023 -6.0046 -1.1429 35 1 1.1028 -5.0788 -2.1959 36 1 1.1616 -7.5035 -1.4201 37 1 2.3317 -8.2992 -0.3384 38 1 0.7963 -9.9721 -1.3036 39 1 -0.6047 -9.0626 -0.6876 40 1 1.6071 -10.3050 1.0106 41 1 -0.0455 -10.9395 0.8259 42 1 -0.0416 -9.1281 4.0086 43 1 -0.7531 -10.5550 3.2173 44 1 1.4192 -11.0476 4.3924 45 1 1.9689 -8.2142 2.1574 46 1 0.5818 -7.3133 2.8150 47 1 2.9310 -3.5560 -0.8461 48 1 2.8080 -3.6682 0.9286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869230310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:52 Heat of formation + Delta-G solvation = -138.399495 kcal Electronic energy + Delta-G solvation = -30250.314652 eV Core-core repulsion = 25975.344993 eV Total energy + Delta-G solvation = -4274.969659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.42156 -47.29538 -40.22124 -38.42370 -36.67766 -34.33231 -33.33161 -31.38424 -31.12211 -30.05855 -29.17356 -25.31589 -25.04295 -24.43167 -23.20541 -22.40764 -21.65695 -20.46995 -19.48092 -18.33723 -17.85972 -17.66990 -16.98288 -16.58900 -16.19338 -15.77781 -15.19678 -14.97816 -14.70057 -14.41573 -14.26113 -14.03586 -13.84343 -13.52329 -13.41873 -13.33129 -13.13513 -12.92626 -12.69802 -12.53109 -12.37325 -12.11857 -11.95644 -11.92279 -11.84806 -11.23148 -10.98811 -10.96669 -10.85966 -10.74110 -10.69280 -10.50076 -10.25822 -9.93993 -9.79070 -9.45069 -9.15496 -8.80809 -8.44099 -8.38105 -7.86510 -6.01741 -4.08777 3.05750 3.29142 3.29842 3.36662 3.40712 3.52181 3.75817 4.00009 4.19470 4.39397 4.42939 4.61921 4.73351 4.85056 4.99165 5.08389 5.17124 5.25562 5.27135 5.31792 5.42554 5.50105 5.57132 5.64807 5.65858 5.78051 5.80816 5.84835 5.95416 6.05988 6.16705 6.24275 6.34976 6.42062 6.50477 6.67903 6.73257 6.79689 6.83047 6.99700 7.18638 7.34618 7.69523 7.92614 8.04635 8.08323 8.38185 8.68345 8.95008 9.56074 11.03672 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.002788 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.385623 B =10042.406002 C =10568.650732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.135 4.135 13 C 0.107 3.893 14 N -0.601 5.601 15 C 0.515 3.485 16 O -0.552 6.552 17 C -0.102 4.102 18 H 0.099 0.901 19 C -0.114 4.114 20 C -0.114 4.114 21 C 0.042 3.958 22 N -0.531 5.531 23 C 0.010 3.990 24 C 0.221 3.779 25 F -0.204 7.204 26 F -0.197 7.197 27 C 0.057 3.943 28 C 0.118 3.882 29 H 0.260 0.740 30 H 0.035 0.965 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.053 0.947 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 -22.557 1.591 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.174 4.174 13 C -0.016 4.016 14 N -0.333 5.333 15 C 0.302 3.698 16 O -0.430 6.430 17 C -0.123 4.123 18 H 0.117 0.883 19 C -0.152 4.152 20 C -0.152 4.152 21 C -0.086 4.086 22 N -0.253 5.253 23 C -0.119 4.119 24 C 0.166 3.834 25 F -0.185 7.185 26 F -0.178 7.178 27 C -0.070 4.070 28 C -0.003 4.003 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.072 0.928 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.235 -22.215 1.891 22.529 hybrid contribution 1.213 0.748 0.035 1.426 sum -2.022 -21.466 1.927 21.647 Atomic orbital electron populations 1.69872 1.05886 1.26452 1.50558 1.24936 0.94858 0.99070 0.94954 0.86582 0.79939 0.83352 0.78066 1.20700 1.21249 1.19855 1.21083 0.93001 0.90307 1.50863 0.92500 1.18968 0.92936 0.91149 0.94802 0.95310 1.21628 0.99453 0.95413 0.98543 1.22011 0.97671 0.96710 1.00970 1.21850 0.91424 0.99217 0.89157 1.48286 1.42049 1.15883 1.27057 1.20373 0.84051 0.84142 0.81228 1.90656 1.35106 1.80469 1.36802 1.21262 1.00789 0.93607 0.96671 0.88254 1.21634 1.00119 0.95864 0.97602 1.21598 1.00952 0.96318 0.96360 1.22522 0.99739 0.95223 0.91076 1.62000 1.53816 1.06523 1.03012 1.23429 0.94612 0.99293 0.94598 1.22928 0.87366 0.80943 0.92213 1.92959 1.96754 1.61331 1.67461 1.92970 1.58769 1.69467 1.96594 1.22231 0.97835 0.90093 0.96876 1.21989 0.95072 0.81885 1.01397 0.92989 0.94628 0.88643 0.92363 0.92513 0.90693 0.91993 0.90759 0.91626 0.91093 0.90874 0.93182 0.90326 0.87568 0.87461 0.87341 0.91043 0.90258 0.92822 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.94 11.31 55.43 0.63 -24.32 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -13.97 8.56 -34.44 -0.29 -14.27 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.51 4.96 -26.69 -0.13 -2.65 16 12 C -0.14 -2.40 6.08 -26.61 -0.16 -2.56 16 13 C 0.11 1.65 5.45 -3.67 -0.02 1.63 16 14 N -0.60 -11.21 2.97 -172.71 -0.51 -11.72 16 15 C 0.52 9.43 6.91 -10.98 -0.08 9.35 16 16 O -0.55 -12.05 15.42 5.56 0.09 -11.97 16 17 C -0.10 -1.41 1.82 -91.69 -0.17 -1.58 16 18 H 0.10 1.33 7.07 -51.93 -0.37 0.96 16 19 C -0.11 -1.34 4.95 -26.60 -0.13 -1.47 16 20 C -0.11 -1.09 6.09 -26.65 -0.16 -1.25 16 21 C 0.04 0.42 3.95 -3.84 -0.02 0.40 16 22 N -0.53 -5.59 4.86 -234.67 -1.14 -6.73 16 23 C 0.01 0.08 6.01 -3.82 -0.02 0.06 16 24 C 0.22 1.77 5.14 37.16 0.19 1.96 16 25 F -0.20 -1.91 13.91 2.25 0.03 -1.88 16 26 F -0.20 -2.33 13.91 2.25 0.03 -2.29 16 27 C 0.06 0.76 3.75 -3.84 -0.01 0.75 16 28 C 0.12 2.58 5.64 -3.71 -0.02 2.56 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.95 4.72 -51.93 -0.24 0.71 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.82 6.27 -51.93 -0.33 0.49 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.57 5.70 -51.93 -0.30 0.27 16 41 H 0.08 0.70 7.76 -51.93 -0.40 0.29 16 42 H 0.11 0.72 7.85 -51.92 -0.41 0.31 16 43 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 1.09 5.35 -51.93 -0.28 0.81 16 46 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 47 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.08 1.84 7.04 -51.93 -0.37 1.47 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -31.16 361.48 -9.39 -40.54 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.61 Total: 1.41 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -1.33 Total: -4.64 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -1.03 Total: -42.77 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.06 Total: -4.17 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.16 -9.39 -40.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869230310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.855 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds