Wall clock time and date at job start Tue Mar 31 2020 17:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46872 * 269.99700 * 3 2 1 5 5 H 1.48497 * 109.47136 * 30.00119 * 3 2 1 6 6 H 1.48499 * 109.46803 * 149.99874 * 3 2 1 7 7 C 1.38820 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99467 * 195.68189 * 7 2 1 9 9 N 1.36933 * 120.00427 * 15.67693 * 7 2 1 10 10 C 1.44573 * 118.64248 * 206.49309 * 9 7 2 11 11 C 1.54865 * 109.60502 * 270.74733 * 10 9 7 12 12 C 1.47092 * 110.31959 * 288.73482 * 11 10 9 13 13 C 1.52565 * 114.32385 * 62.80327 * 12 11 10 14 14 C 1.50883 * 109.35982 * 274.98180 * 13 12 11 15 15 H 1.09002 * 109.25938 * 331.76215 * 14 13 12 16 16 N 1.46493 * 109.36996 * 212.08100 * 14 13 12 17 17 C 1.34784 * 120.00197 * 154.35809 * 16 14 13 18 18 O 1.21284 * 119.99635 * 0.02562 * 17 16 14 19 19 C 1.50696 * 120.00029 * 180.02562 * 17 16 14 20 20 C 1.53004 * 109.47149 * 180.02562 * 19 17 16 21 21 H 1.09002 * 110.01228 * 54.29431 * 20 19 17 22 22 C 1.54257 * 110.03426 * 175.68816 * 20 19 17 23 23 C 1.54890 * 104.19694 * 142.89252 * 22 20 19 24 24 C 1.54884 * 102.74743 * 322.06185 * 23 22 20 25 25 C 1.53869 * 110.02861 * 292.90850 * 20 19 17 26 26 F 1.39897 * 110.03624 * 359.97438 * 25 20 19 27 27 F 1.39905 * 110.03066 * 121.43067 * 25 20 19 28 28 C 1.47606 * 118.64222 * 26.51417 * 9 7 2 29 29 H 0.96996 * 120.00179 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.45475 * 30.79239 * 10 9 7 31 31 H 1.09007 * 109.44413 * 150.70932 * 10 9 7 32 32 H 1.08994 * 109.32665 * 48.99574 * 11 10 9 33 33 H 1.08996 * 109.32874 * 168.65042 * 11 10 9 34 34 H 1.09002 * 108.51071 * 184.05344 * 12 11 10 35 35 H 1.08999 * 108.51733 * 301.70097 * 12 11 10 36 36 H 1.09005 * 109.49150 * 155.01967 * 13 12 11 37 37 H 1.09003 * 109.49462 * 34.94696 * 13 12 11 38 38 H 0.97001 * 120.00204 * 334.36337 * 16 14 13 39 39 H 1.09002 * 109.47175 * 299.99691 * 19 17 16 40 40 H 1.09001 * 109.47381 * 60.00320 * 19 17 16 41 41 H 1.09001 * 110.49225 * 261.57256 * 22 20 19 42 42 H 1.08998 * 110.48941 * 24.21319 * 22 20 19 43 43 H 1.09003 * 110.75062 * 80.37188 * 23 22 20 44 44 H 1.09000 * 110.75909 * 203.74319 * 23 22 20 45 45 H 1.09000 * 110.48590 * 156.62119 * 24 23 22 46 46 H 1.09000 * 110.48645 * 279.12586 * 24 23 22 47 47 H 1.08998 * 108.94748 * 17.16124 * 28 9 7 48 48 H 1.08999 * 108.87673 * 258.48762 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0600 -1.2198 0.2523 9 7 1.3637 -2.3660 -0.3215 10 6 1.8692 -3.6100 0.2142 11 6 2.9234 -4.2022 -0.7535 12 6 2.2720 -4.7058 -1.9723 13 6 1.5639 -3.6339 -2.7953 14 6 0.1724 -3.4235 -2.2512 15 1 -0.1765 -4.3471 -1.7894 16 7 -0.7278 -3.0582 -3.3477 17 6 -2.0474 -3.3151 -3.2502 18 8 -2.4894 -3.8482 -2.2546 19 6 -2.9733 -2.9399 -4.3784 20 6 -4.4058 -3.3371 -4.0160 21 1 -4.6828 -2.9001 -3.0566 22 6 -5.3797 -2.8622 -5.1140 23 6 -6.4293 -3.9974 -5.2077 24 6 -5.5717 -5.2726 -5.0150 25 6 -4.5275 -4.8697 -3.9518 26 9 -3.2937 -5.4611 -4.2437 27 9 -4.9600 -5.2632 -2.6808 28 6 0.1798 -2.2984 -1.2004 29 1 -0.4850 0.8400 -0.0004 30 1 2.3300 -3.4267 1.1849 31 1 1.0467 -4.3157 0.3309 32 1 3.6418 -3.4278 -1.0220 33 1 3.4447 -5.0228 -0.2607 34 1 3.0282 -5.1795 -2.5984 35 1 1.5389 -5.4602 -1.6866 36 1 1.5031 -3.9548 -3.8352 37 1 2.1232 -2.7002 -2.7346 38 1 -0.3743 -2.6316 -4.1439 39 1 -2.9262 -1.8636 -4.5445 40 1 -2.6700 -3.4614 -5.2862 41 1 -5.8556 -1.9258 -4.8229 42 1 -4.8571 -2.7466 -6.0635 43 1 -7.1693 -3.9058 -4.4125 44 1 -6.9101 -3.9993 -6.1859 45 1 -6.1876 -6.0953 -4.6517 46 1 -5.0819 -5.5477 -5.9491 47 1 0.1734 -1.3361 -1.7122 48 1 -0.7187 -2.3795 -0.5887 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034366521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:11 Heat of formation + Delta-G solvation = -130.562664 kcal Electronic energy + Delta-G solvation = -30478.329779 eV Core-core repulsion = 26203.699950 eV Total energy + Delta-G solvation = -4274.629829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -48.69964 -46.75490 -39.56356 -37.96503 -37.15913 -34.28299 -33.47618 -31.98520 -30.72631 -29.85479 -28.03247 -26.28182 -25.66472 -24.16021 -22.90990 -21.49479 -20.67406 -20.12144 -19.54462 -19.14770 -17.62667 -16.87386 -16.65288 -16.50972 -16.02568 -15.55869 -15.24869 -14.79885 -14.49040 -14.17398 -14.07206 -13.91378 -13.57422 -13.37758 -13.19216 -13.08224 -12.90071 -12.73841 -12.39635 -12.26780 -12.04271 -11.79877 -11.69303 -11.49746 -11.43784 -11.25494 -11.07894 -10.96838 -10.94618 -10.68227 -10.48705 -10.37230 -10.19998 -10.09833 -9.90595 -9.74229 -9.47142 -9.29811 -8.45171 -8.31332 -6.60385 -5.72600 -3.17581 3.13679 3.37670 3.45070 3.46528 3.56625 3.74489 3.89243 4.13008 4.27962 4.52953 4.74596 4.84948 4.96017 5.06044 5.16802 5.18140 5.29144 5.38332 5.39931 5.42542 5.50623 5.51370 5.57226 5.66623 5.69412 5.73124 5.78879 5.86043 5.99949 6.07418 6.09315 6.30144 6.39279 6.53878 6.68655 6.71411 6.72631 6.86289 6.97822 7.06786 7.15634 7.45508 7.80729 7.87788 8.03744 8.51080 8.74768 9.28201 9.95593 10.41223 11.33478 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.003535 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.995393 B = 7919.345969 C = 8972.542420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.899 3.101 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.258 4.258 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.154 3.846 11 C -0.147 4.147 12 C -0.099 4.099 13 C -0.115 4.115 14 C 0.120 3.880 15 H 0.072 0.928 16 N -0.718 5.718 17 C 0.511 3.489 18 O -0.532 6.532 19 C -0.135 4.135 20 C -0.118 4.118 21 H 0.110 0.890 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.165 4.165 25 C 0.295 3.705 26 F -0.197 7.197 27 F -0.191 7.191 28 C 0.176 3.824 29 H 0.252 0.748 30 H 0.045 0.955 31 H 0.032 0.968 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.393 0.607 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.076 0.924 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.142 -7.937 -15.148 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.388 4.388 8 H 0.084 0.916 9 N -0.309 5.309 10 C 0.026 3.974 11 C -0.187 4.187 12 C -0.137 4.137 13 C -0.153 4.153 14 C 0.015 3.985 15 H 0.090 0.910 16 N -0.369 5.369 17 C 0.296 3.704 18 O -0.408 6.408 19 C -0.175 4.175 20 C -0.137 4.137 21 H 0.128 0.872 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.203 4.203 25 C 0.258 3.742 26 F -0.178 7.178 27 F -0.171 7.171 28 C 0.050 3.950 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.226 0.774 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.114 0.886 47 H 0.094 0.906 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -9.570 -8.229 -14.351 19.112 hybrid contribution 0.805 1.030 -0.291 1.339 sum -8.765 -7.199 -14.643 18.522 Atomic orbital electron populations 1.70105 1.05135 1.25244 1.53948 1.25054 0.95228 0.98295 1.00887 0.86335 0.79174 0.83974 0.77563 1.21596 1.21838 1.20456 1.19221 0.92409 0.84967 1.42161 0.91629 1.43548 1.32490 1.02012 1.52852 1.20734 0.94098 0.88279 0.94264 1.21497 1.00166 0.99651 0.97406 1.20223 0.98924 0.97519 0.96990 1.21274 0.95860 1.00724 0.97420 1.21725 0.87924 1.00638 0.88196 0.90997 1.46082 1.07334 1.62555 1.20935 1.20347 0.83016 0.78789 0.88238 1.90741 1.75823 1.42360 1.31922 1.21696 0.93195 1.03809 0.98826 1.22598 0.95771 0.92686 1.02672 0.87221 1.22440 0.95948 0.99005 0.98234 1.22464 0.97496 0.93096 1.02930 1.23413 0.97573 1.00227 0.99078 1.21590 0.79931 0.92285 0.80370 1.92977 1.45812 1.85823 1.93157 1.93031 1.89342 1.92242 1.42516 1.21298 0.89008 0.95124 0.89588 0.93776 0.93615 0.94936 0.92109 0.93489 0.93787 0.93256 0.93206 0.90200 0.77387 0.88002 0.88528 0.90001 0.90390 0.90422 0.90079 0.89188 0.88648 0.90578 0.95161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 11.01 55.49 0.61 -25.80 16 2 C 0.00 0.11 4.87 -17.43 -0.08 0.03 16 3 Si 0.90 21.67 29.58 -169.99 -5.03 16.64 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.26 -7.03 9.44 -15.06 -0.14 -7.17 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.78 2.27 -172.09 -0.39 -15.17 16 10 C 0.15 3.35 5.65 -4.09 -0.02 3.33 16 11 C -0.15 -2.66 5.74 -28.58 -0.16 -2.82 16 12 C -0.10 -1.65 5.16 -29.79 -0.15 -1.81 16 13 C -0.11 -2.00 5.07 -28.02 -0.14 -2.14 16 14 C 0.12 2.38 2.28 -68.50 -0.16 2.23 16 15 H 0.07 1.57 6.73 -51.93 -0.35 1.22 16 16 N -0.72 -12.06 4.97 -54.36 -0.27 -12.33 16 17 C 0.51 8.85 6.67 -10.98 -0.07 8.78 16 18 O -0.53 -11.60 14.16 5.55 0.08 -11.52 16 19 C -0.14 -1.62 4.63 -27.88 -0.13 -1.75 16 20 C -0.12 -1.39 2.40 -89.51 -0.21 -1.61 16 21 H 0.11 1.53 7.82 -51.93 -0.41 1.13 16 22 C -0.12 -0.91 6.36 -25.08 -0.16 -1.07 16 23 C -0.12 -0.85 6.91 -24.74 -0.17 -1.03 16 24 C -0.16 -1.46 6.40 -25.02 -0.16 -1.62 16 25 C 0.29 3.91 1.79 -25.56 -0.05 3.87 16 26 F -0.20 -3.04 14.05 2.25 0.03 -3.00 16 27 F -0.19 -3.17 16.74 2.25 0.04 -3.13 16 28 C 0.18 4.33 4.26 -2.94 -0.01 4.32 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.05 1.00 7.99 -51.93 -0.41 0.59 16 31 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.83 7.35 -51.93 -0.38 0.45 16 36 H 0.05 0.74 7.95 -51.93 -0.41 0.33 16 37 H 0.08 1.56 7.48 -51.93 -0.39 1.17 16 38 H 0.39 5.31 8.56 -40.82 -0.35 4.96 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.10 0.95 7.66 -51.93 -0.40 0.55 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.48 7.85 -51.93 -0.41 0.08 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 46 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 47 H 0.08 2.04 6.31 -51.93 -0.33 1.71 16 48 H 0.03 0.87 8.03 -51.93 -0.42 0.46 16 LS Contribution 372.93 15.07 5.62 5.62 Total: -1.00 -33.55 372.93 -9.16 -42.71 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -8.02 Total: 4.44 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.83 Total: 1.54 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.05 Total: -53.30 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.07 Total: -6.13 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.55 -9.16 -42.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034366521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.848 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds