Wall clock time and date at job start Tue Mar 31 2020 16:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48506 * 109.47125 * 270.00289 * 3 2 1 5 5 H 1.48496 * 109.47363 * 30.00046 * 3 2 1 6 6 H 1.48498 * 109.47068 * 150.00245 * 3 2 1 7 7 C 1.38816 * 119.99576 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99522 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00221 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99939 * 185.75378 * 9 7 2 11 11 C 1.52992 * 110.43577 * 59.12727 * 10 9 7 12 12 N 1.46502 * 109.47407 * 54.95311 * 11 10 9 13 13 C 1.34777 * 120.00154 * 175.55265 * 12 11 10 14 14 O 1.21283 * 119.99867 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00029 * 180.02562 * 13 12 11 16 16 C 1.53003 * 109.47419 * 180.02562 * 15 13 12 17 17 H 1.09000 * 110.01142 * 305.69583 * 16 15 13 18 18 C 1.54267 * 110.03522 * 184.30723 * 16 15 13 19 19 C 1.54885 * 104.19808 * 217.10247 * 18 16 15 20 20 C 1.54896 * 102.74725 * 37.94224 * 19 18 16 21 21 C 1.53869 * 110.03372 * 67.08553 * 16 15 13 22 22 F 1.39895 * 110.03515 * 238.57180 * 21 16 15 23 23 F 1.39901 * 110.03056 * 0.02562 * 21 16 15 24 24 C 1.54889 * 110.48799 * 296.58021 * 10 9 7 25 25 C 1.54885 * 102.91640 * 279.17578 * 24 10 9 26 26 C 1.54468 * 104.10333 * 322.29695 * 25 24 10 27 27 C 1.53879 * 106.68095 * 23.34441 * 26 25 24 28 28 H 0.97009 * 119.99528 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99774 * 5.75762 * 9 7 2 30 30 H 1.09006 * 109.47343 * 174.95764 * 11 10 9 31 31 H 1.09005 * 109.47267 * 294.95364 * 11 10 9 32 32 H 0.96998 * 119.99887 * 355.55595 * 12 11 10 33 33 H 1.08996 * 109.47181 * 299.99906 * 15 13 12 34 34 H 1.09000 * 109.47659 * 59.99617 * 15 13 12 35 35 H 1.09000 * 110.48244 * 335.78359 * 18 16 15 36 36 H 1.08997 * 110.48598 * 98.28981 * 18 16 15 37 37 H 1.08995 * 110.75915 * 156.25812 * 19 18 16 38 38 H 1.09005 * 110.75581 * 279.44741 * 19 18 16 39 39 H 1.09001 * 110.48553 * 80.73402 * 20 19 18 40 40 H 1.08996 * 110.48469 * 203.38154 * 20 19 18 41 41 H 1.09002 * 110.75058 * 37.58165 * 24 10 9 42 42 H 1.08999 * 110.75544 * 160.76387 * 24 10 9 43 43 H 1.08995 * 110.48718 * 80.82803 * 25 24 10 44 44 H 1.09000 * 110.48467 * 203.46963 * 25 24 10 45 45 H 1.09001 * 109.85715 * 264.10727 * 26 25 24 46 46 H 1.08997 * 110.16311 * 142.74907 * 26 25 24 47 47 H 1.09002 * 110.03391 * 240.87216 * 27 26 25 48 48 H 1.09001 * 110.07068 * 119.46283 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0525 -3.6536 0.1261 11 6 2.8467 -3.6850 1.4333 12 7 1.9451 -3.4273 2.5589 13 6 2.4084 -3.4952 3.8227 14 8 3.5718 -3.7692 4.0282 15 6 1.4808 -3.2308 4.9805 16 6 2.2522 -3.3707 6.2944 17 1 2.7420 -4.3435 6.3376 18 6 1.2919 -3.2090 7.4909 19 6 2.1251 -2.4392 8.5454 20 6 2.9351 -1.4423 7.6797 21 6 3.2978 -2.2482 6.4139 22 9 4.5777 -2.7975 6.5449 23 9 3.2434 -1.4208 5.2871 24 6 2.9945 -3.8613 -1.0857 25 6 2.0385 -4.3991 -2.1792 26 6 1.0651 -5.3187 -1.4092 27 6 1.0765 -4.8463 0.0553 28 1 -0.4850 0.8402 0.0004 29 1 0.3591 -2.3901 -0.0844 30 1 3.3085 -4.6649 1.5546 31 1 3.6218 -2.9190 1.4060 32 1 1.0146 -3.2079 2.3946 33 1 1.0794 -2.2205 4.9011 34 1 0.6616 -3.9496 4.9614 35 1 0.4150 -2.6302 7.2007 36 1 0.9938 -4.1844 7.8753 37 1 1.4739 -1.9076 9.2393 38 1 2.7889 -3.1165 9.0828 39 1 2.3236 -0.5782 7.4200 40 1 3.8380 -1.1285 8.2034 41 1 3.4413 -2.9161 -1.3941 42 1 3.7670 -4.5943 -0.8533 43 1 1.4954 -3.5787 -2.6483 44 1 2.5939 -4.9665 -2.9261 45 1 1.4055 -6.3524 -1.4707 46 1 0.0601 -5.2315 -1.8218 47 1 1.4223 -5.6507 0.7045 48 1 0.0773 -4.5293 0.3538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753667778.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:10 Heat of formation + Delta-G solvation = -150.131178 kcal Electronic energy + Delta-G solvation = -30379.878440 eV Core-core repulsion = 26104.400057 eV Total energy + Delta-G solvation = -4275.478383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.57585 -46.63338 -39.44134 -38.25685 -37.24817 -33.98434 -33.19802 -31.85125 -30.49331 -28.27649 -28.16391 -27.81008 -25.96682 -24.01585 -23.18599 -21.41945 -20.56285 -20.03111 -19.46751 -18.60276 -17.54350 -17.00080 -16.73975 -16.51748 -15.97798 -15.63469 -15.05297 -14.84554 -14.57934 -14.30089 -14.02234 -13.96885 -13.78930 -13.38868 -13.25495 -13.05841 -12.85524 -12.72319 -12.55209 -12.24199 -11.84235 -11.62481 -11.60132 -11.42810 -11.34050 -11.32624 -11.04313 -10.90663 -10.81936 -10.72146 -10.61883 -10.47954 -10.39459 -10.26893 -9.97859 -9.80290 -9.62938 -9.32885 -8.88170 -8.30822 -7.00301 -5.79719 -3.08393 3.18975 3.43307 3.49809 3.52677 3.72492 3.84906 3.96442 4.23283 4.37856 4.58681 4.83589 4.93895 5.04033 5.11766 5.16720 5.21157 5.23623 5.25607 5.28588 5.49535 5.52873 5.58956 5.64868 5.67127 5.69440 5.72318 5.77924 5.84984 5.94826 5.95584 6.01128 6.13529 6.15995 6.26780 6.29579 6.38604 6.49576 6.58903 6.68630 6.81801 6.84909 7.03827 7.18029 7.73204 8.17883 8.39052 8.82557 9.51317 10.04474 10.40321 11.42311 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.004195 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.799653 B = 6673.020508 C = 8106.407205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.899 3.101 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.230 4.230 8 H 0.069 0.931 9 N -0.708 5.708 10 C 0.189 3.811 11 C 0.123 3.877 12 N -0.699 5.699 13 C 0.509 3.491 14 O -0.552 6.552 15 C -0.136 4.136 16 C -0.115 4.115 17 H 0.105 0.895 18 C -0.119 4.119 19 C -0.121 4.121 20 C -0.166 4.166 21 C 0.293 3.707 22 F -0.194 7.194 23 F -0.190 7.190 24 C -0.131 4.131 25 C -0.113 4.113 26 C -0.118 4.118 27 C -0.122 4.122 28 H 0.254 0.746 29 H 0.384 0.616 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.403 0.597 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 -9.506 12.555 15.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.204 4.204 3 Si 0.731 3.269 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.361 4.361 8 H 0.087 0.913 9 N -0.349 5.349 10 C 0.096 3.904 11 C -0.004 4.004 12 N -0.349 5.349 13 C 0.294 3.706 14 O -0.431 6.431 15 C -0.176 4.176 16 C -0.134 4.134 17 H 0.123 0.877 18 C -0.157 4.157 19 C -0.159 4.159 20 C -0.204 4.204 21 C 0.257 3.743 22 F -0.175 7.175 23 F -0.171 7.171 24 C -0.172 4.172 25 C -0.151 4.151 26 C -0.156 4.156 27 C -0.160 4.160 28 H 0.064 0.936 29 H 0.219 0.781 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.239 0.761 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.510 -9.540 12.663 15.863 hybrid contribution -0.098 1.278 -0.371 1.335 sum 0.411 -8.261 12.292 14.816 Atomic orbital electron populations 1.69653 1.04973 1.25548 1.57908 1.24657 0.95395 0.97427 1.02900 0.86296 0.78972 0.84210 0.77438 1.21836 1.21877 1.20729 1.19088 0.90997 0.83781 1.42201 0.91311 1.42399 1.06033 0.99396 1.87077 1.20631 0.91361 0.87131 0.91253 1.21751 0.92998 0.99378 0.86242 1.45701 1.14561 1.69696 1.04950 1.20349 0.88658 0.77209 0.84372 1.90687 1.17878 1.49313 1.85267 1.21685 0.98802 1.05074 0.92084 1.22566 0.95666 0.99760 0.95452 0.87669 1.22447 0.97844 1.01507 0.93904 1.22447 0.98558 0.97585 0.97309 1.23431 1.02727 0.99457 0.94797 1.21584 0.80879 0.87784 0.84095 1.93003 1.42058 1.86474 1.95924 1.93045 1.96322 1.73192 1.54550 1.22879 0.97297 1.00610 0.96371 1.22224 0.97069 0.98537 0.97229 1.22087 0.99449 0.98459 0.95604 1.22369 0.99863 0.97420 0.96383 0.93643 0.78112 0.92950 0.91993 0.76146 0.87974 0.88335 0.90221 0.90199 0.90102 0.90583 0.88443 0.89214 0.90794 0.92896 0.91226 0.93055 0.92863 0.92448 0.92061 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.62 13.07 55.49 0.73 -25.89 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 22.38 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.23 -5.95 8.61 -15.06 -0.13 -6.08 16 8 H 0.07 1.82 7.14 -52.49 -0.37 1.45 16 9 N -0.71 -15.84 4.57 -45.70 -0.21 -16.05 16 10 C 0.19 3.46 0.53 -130.16 -0.07 3.39 16 11 C 0.12 2.33 4.28 -4.05 -0.02 2.31 16 12 N -0.70 -12.60 5.27 -60.30 -0.32 -12.92 16 13 C 0.51 9.09 6.70 -10.99 -0.07 9.01 16 14 O -0.55 -11.68 14.50 5.56 0.08 -11.60 16 15 C -0.14 -1.82 4.63 -27.88 -0.13 -1.95 16 16 C -0.11 -1.42 2.40 -89.50 -0.21 -1.63 16 17 H 0.11 1.38 7.82 -51.93 -0.41 0.97 16 18 C -0.12 -1.00 6.36 -25.07 -0.16 -1.16 16 19 C -0.12 -0.96 6.91 -24.74 -0.17 -1.13 16 20 C -0.17 -1.74 6.41 -25.01 -0.16 -1.91 16 21 C 0.29 4.32 1.79 -25.56 -0.05 4.27 16 22 F -0.19 -3.33 16.74 2.25 0.04 -3.29 16 23 F -0.19 -3.54 14.04 2.25 0.03 -3.51 16 24 C -0.13 -2.30 5.88 -24.74 -0.15 -2.45 16 25 C -0.11 -1.79 6.81 -24.97 -0.17 -1.96 16 26 C -0.12 -1.70 6.81 -25.50 -0.17 -1.87 16 27 C -0.12 -1.89 5.84 -25.61 -0.15 -2.04 16 28 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.38 9.20 7.49 -40.82 -0.31 8.89 16 30 H 0.05 0.95 8.03 -51.93 -0.42 0.53 16 31 H 0.06 1.37 7.61 -51.93 -0.40 0.97 16 32 H 0.40 7.07 8.05 -40.82 -0.33 6.74 16 33 H 0.10 1.38 7.66 -51.93 -0.40 0.98 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.08 0.61 7.85 -51.93 -0.41 0.20 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.96 8.12 -51.93 -0.42 0.54 16 40 H 0.09 0.88 8.11 -51.93 -0.42 0.46 16 41 H 0.07 1.46 7.17 -51.93 -0.37 1.09 16 42 H 0.05 0.84 8.06 -51.93 -0.42 0.42 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.06 0.87 7.76 -51.93 -0.40 0.47 16 48 H 0.06 1.01 7.75 -51.93 -0.40 0.60 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -31.47 380.61 -8.83 -40.31 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -7.99 Total: 13.36 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -1.90 Total: -3.50 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.20 Total: -54.87 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 0.07 Total: -6.80 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.47 -8.83 -40.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753667778.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.825 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds