Wall clock time and date at job start Tue Mar 31 2020 16:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38823 * 120.41967 * 2 1 4 4 C 1.38780 * 118.50630 * 180.02562 * 3 2 1 5 5 N 1.32115 * 119.16814 * 359.72995 * 4 3 2 6 6 C 1.32452 * 120.77100 * 0.54537 * 5 4 3 7 7 C 1.48534 * 119.18804 * 179.72074 * 6 5 4 8 8 O 1.21468 * 119.99696 * 179.73219 * 7 6 5 9 9 N 1.34775 * 119.99942 * 359.72544 * 7 6 5 10 10 C 1.46935 * 125.40747 * 0.02964 * 9 7 6 11 11 C 1.54805 * 107.40814 * 181.48336 * 10 9 7 12 12 H 1.09000 * 111.32913 * 219.65676 * 11 10 9 13 13 C 1.50860 * 106.55188 * 97.74999 * 11 10 9 14 14 C 1.52845 * 109.42074 * 192.46374 * 13 11 10 15 15 C 1.52670 * 108.57733 * 65.04709 * 14 13 11 16 16 C 1.51486 * 110.82311 * 299.96270 * 15 14 13 17 17 H 1.09004 * 108.28179 * 285.20770 * 16 15 14 18 18 N 1.46503 * 108.13232 * 168.21699 * 16 15 14 19 19 C 1.36935 * 120.00160 * 79.19449 * 18 16 15 20 20 H 1.07999 * 119.99624 * 359.97438 * 19 18 16 21 21 C 1.38809 * 119.99772 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00375 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99761 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47194 * 59.99714 * 23 21 19 25 25 H 1.48494 * 109.47439 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46850 * 300.00183 * 23 21 19 27 27 C 1.49578 * 115.48966 * 46.76797 * 16 15 14 28 28 H 1.09002 * 107.99821 * 201.47962 * 27 16 15 29 29 C 1.47242 * 125.40276 * 180.02562 * 9 7 6 30 30 N 1.32101 * 120.42272 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47381 * 269.98101 * 1 2 3 32 32 H 1.09002 * 109.47022 * 29.98173 * 1 2 3 33 33 H 1.09011 * 109.47107 * 149.97477 * 1 2 3 34 34 H 1.07999 * 120.74305 * 359.97438 * 3 2 1 35 35 H 1.08009 * 120.41473 * 180.02562 * 4 3 2 36 36 H 1.09002 * 109.88153 * 300.98145 * 10 9 7 37 37 H 1.08996 * 109.87991 * 61.98570 * 10 9 7 38 38 H 1.09004 * 109.62827 * 72.44342 * 13 11 10 39 39 H 1.08995 * 109.47346 * 312.38841 * 13 11 10 40 40 H 1.09002 * 109.61831 * 305.32007 * 14 13 11 41 41 H 1.09001 * 109.62273 * 184.77487 * 14 13 11 42 42 H 1.09006 * 109.20832 * 179.61971 * 15 14 13 43 43 H 1.08997 * 109.21140 * 60.31228 * 15 14 13 44 44 H 0.97007 * 119.99546 * 259.19193 * 18 16 15 45 45 H 0.96994 * 119.99737 * 179.97438 * 22 21 19 46 46 H 1.09003 * 110.24231 * 317.56678 * 29 9 7 47 47 H 1.09005 * 110.23744 * 79.55399 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2098 1.1971 0.0000 4 6 3.5969 1.1508 -0.0005 5 7 4.2019 -0.0237 0.0044 6 6 3.5005 -1.1473 -0.0010 7 6 4.2170 -2.4484 -0.0015 8 8 3.5884 -3.4878 -0.0015 9 7 5.5645 -2.4757 -0.0021 10 6 6.4399 -1.2955 -0.0016 11 6 7.9018 -1.8033 -0.0408 12 1 8.5465 -1.2054 0.6034 13 6 8.3413 -1.7370 -1.4824 14 6 9.6520 -2.5052 -1.6500 15 6 9.3902 -3.9819 -1.3644 16 6 8.8763 -4.1745 0.0476 17 1 9.7130 -4.0530 0.7356 18 7 8.3804 -5.5477 0.1690 19 6 9.2614 -6.5802 0.3508 20 1 10.3217 -6.3822 0.4042 21 6 8.7915 -7.8813 0.4652 22 7 7.4993 -8.1226 0.3996 23 14 9.9933 -9.2899 0.7125 24 1 10.7588 -9.0731 1.9665 25 1 9.2448 -10.5691 0.8038 26 1 10.9321 -9.3471 -0.4368 27 6 7.7844 -3.2425 0.4678 28 1 7.7709 -3.2091 1.5572 29 6 6.3930 -3.6928 -0.0031 30 7 2.1759 -1.1391 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3634 -0.8898 -0.5143 34 1 1.6889 2.1432 -0.0004 35 1 4.1745 2.0635 -0.0001 36 1 6.2366 -0.6829 -0.8800 37 1 6.2744 -0.7116 0.9037 38 1 8.4909 -0.6969 -1.7722 39 1 7.5756 -2.1837 -2.1166 40 1 10.3928 -2.1223 -0.9480 41 1 10.0166 -2.3888 -2.6706 42 1 10.3179 -4.5409 -1.4876 43 1 8.6495 -4.3579 -2.0700 44 1 7.4280 -5.7255 0.1206 45 1 7.1712 -9.0319 0.4792 46 1 5.9815 -4.4298 0.6867 47 1 6.4515 -4.1083 -1.0092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992716175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:21 Heat of formation + Delta-G solvation = 36.446458 kcal Electronic energy + Delta-G solvation = -28763.541966 eV Core-core repulsion = 24946.843383 eV Total energy + Delta-G solvation = -3816.698583 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.54812 -40.29524 -38.36752 -35.61683 -34.75154 -33.96367 -32.92452 -31.62437 -30.74848 -29.10135 -28.61428 -26.78381 -25.95308 -24.00097 -23.52896 -23.22208 -21.61662 -20.77644 -20.02454 -18.29640 -17.99286 -17.46025 -16.80617 -16.29831 -16.11273 -15.61559 -15.46187 -14.76542 -14.69989 -14.48761 -13.84168 -13.76447 -13.63008 -13.56103 -13.33594 -13.14276 -12.75233 -12.71870 -12.62563 -12.54356 -11.92653 -11.76663 -11.46893 -11.07811 -10.94337 -10.92724 -10.90950 -10.76865 -10.71634 -10.21044 -10.14101 -9.94950 -9.89663 -9.79085 -9.65748 -9.49425 -9.42652 -8.80820 -8.39585 -6.90513 -5.69529 -2.99422 0.21409 0.73475 2.62711 2.67556 3.47951 3.52239 3.53860 3.65106 3.67015 3.88734 4.08766 4.49521 4.59605 4.62355 4.69350 4.79377 4.96079 4.97860 5.03954 5.14388 5.34286 5.37374 5.48227 5.51244 5.55294 5.62329 5.67943 5.76724 5.86592 5.89661 5.91422 5.98498 6.10371 6.14390 6.19654 6.31731 6.38066 6.47231 6.50446 6.55816 6.62962 6.68076 6.80440 6.97734 7.21771 7.50995 7.69750 7.75317 8.21769 8.48210 9.59056 10.15585 10.49695 11.52675 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.003074 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.800871 B = 9105.017998 C =10457.836213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.171 3.829 3 C -0.215 4.215 4 C 0.144 3.856 5 N -0.493 5.493 6 C 0.299 3.701 7 C 0.588 3.412 8 O -0.501 6.501 9 N -0.593 5.593 10 C 0.119 3.881 11 C -0.092 4.092 12 H 0.091 0.909 13 C -0.109 4.109 14 C -0.117 4.117 15 C -0.130 4.130 16 C 0.191 3.809 17 H 0.044 0.956 18 N -0.730 5.730 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 C -0.087 4.087 28 H 0.072 0.928 29 C 0.119 3.881 30 N -0.470 5.470 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.151 0.849 35 H 0.175 0.825 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.087 0.913 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.907 25.597 -2.015 26.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.024 3.976 3 C -0.237 4.237 4 C -0.021 4.021 5 N -0.210 5.210 6 C 0.029 3.971 7 C 0.371 3.629 8 O -0.373 6.373 9 N -0.326 5.326 10 C -0.004 4.004 11 C -0.112 4.112 12 H 0.109 0.891 13 C -0.147 4.147 14 C -0.156 4.156 15 C -0.170 4.170 16 C 0.081 3.919 17 H 0.062 0.938 18 N -0.373 5.373 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.736 3.264 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.214 1.214 27 C -0.107 4.107 28 H 0.090 0.910 29 C -0.002 4.002 30 N -0.186 5.186 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.169 0.831 35 H 0.192 0.808 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.105 0.895 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.739 23.957 -1.955 25.252 hybrid contribution -0.105 0.069 0.131 0.181 sum -7.843 24.027 -1.824 25.340 Atomic orbital electron populations 1.20822 0.87284 1.04378 1.03995 1.21900 0.98001 0.87780 0.89886 1.22993 0.96734 1.00605 1.03405 1.23354 0.92192 0.96247 0.90340 1.68651 1.40900 0.98716 1.12759 1.22923 0.87283 0.93020 0.93878 1.16831 0.80949 0.85981 0.79174 1.90859 1.65834 1.32101 1.48466 1.48181 1.03895 1.09774 1.70786 1.22412 0.88343 0.87160 1.02491 1.21649 0.95197 0.96581 0.97733 0.89067 1.21211 0.98196 0.99754 0.95527 1.21462 0.96683 0.96888 1.00544 1.21880 1.01567 0.93852 0.99705 1.19044 0.93407 0.85244 0.94194 0.93846 1.42697 1.07034 1.00138 1.87430 1.19164 0.89713 0.86439 1.41822 0.91268 1.24742 0.95812 0.97355 1.02945 1.69650 1.11387 1.19849 1.56961 0.86307 0.80035 0.82159 0.77882 1.21361 1.21770 1.21360 1.21165 0.94532 0.93873 1.01085 0.90981 1.22062 0.89162 0.86146 1.02854 1.68115 1.08638 1.30427 1.11396 0.89391 0.89899 0.89492 0.83084 0.80765 0.90542 0.91247 0.92286 0.91947 0.92337 0.92764 0.92180 0.92386 0.77953 0.93415 0.89476 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.22 36.00 0.37 -0.31 16 2 C 0.17 1.69 6.82 -82.26 -0.56 1.13 16 3 C -0.22 -1.50 9.87 -39.16 -0.39 -1.88 16 4 C 0.14 1.12 11.30 -17.23 -0.19 0.93 16 5 N -0.49 -5.78 6.81 -11.12 -0.08 -5.86 16 6 C 0.30 4.50 7.57 -157.07 -1.19 3.31 16 7 C 0.59 10.67 7.88 -12.01 -0.09 10.58 16 8 O -0.50 -11.06 17.16 5.39 0.09 -10.96 16 9 N -0.59 -9.72 3.33 -172.08 -0.57 -10.29 16 10 C 0.12 1.51 4.79 -2.85 -0.01 1.50 16 11 C -0.09 -1.16 3.25 -90.69 -0.29 -1.46 16 12 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 13 C -0.11 -1.33 4.66 -27.88 -0.13 -1.46 16 14 C -0.12 -1.56 5.93 -26.98 -0.16 -1.72 16 15 C -0.13 -2.27 5.29 -27.67 -0.15 -2.42 16 16 C 0.19 3.67 2.57 -70.39 -0.18 3.48 16 17 H 0.04 0.86 8.06 -51.93 -0.42 0.44 16 18 N -0.73 -18.08 4.97 -55.83 -0.28 -18.35 16 19 C -0.24 -6.63 9.79 -15.06 -0.15 -6.78 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.66 13.06 55.49 0.72 -27.93 16 23 Si 0.90 22.68 29.55 -169.99 -5.02 17.66 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C -0.09 -1.43 2.47 -91.93 -0.23 -1.65 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 C 0.12 2.19 4.70 -3.31 -0.02 2.17 16 30 N -0.47 -6.84 10.07 -7.38 -0.07 -6.91 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.29 8.10 -51.93 -0.42 -0.13 16 33 H 0.09 0.64 8.14 -51.92 -0.42 0.21 16 34 H 0.15 0.47 8.06 -52.49 -0.42 0.04 16 35 H 0.18 0.66 8.06 -52.48 -0.42 0.23 16 36 H 0.08 0.91 6.86 -51.93 -0.36 0.56 16 37 H 0.07 0.83 7.52 -51.93 -0.39 0.44 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.85 7.91 -51.93 -0.41 0.44 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.39 10.21 5.67 -40.82 -0.23 9.98 16 45 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 46 H 0.09 1.85 7.59 -51.93 -0.39 1.46 16 47 H 0.08 1.50 8.01 -51.93 -0.42 1.08 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -35.06 374.13 -10.27 -45.33 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.23 Total: 6.71 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -3.47 Total: 4.98 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -0.28 Total: -69.34 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.06 -10.27 -45.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992716175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.776 kcal (2) G-P(sol) polarization free energy of solvation -35.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds