Wall clock time and date at job start Tue Mar 31 2020 16:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38823 * 120.41967 * 2 1 4 4 C 1.38780 * 118.50630 * 180.02562 * 3 2 1 5 5 N 1.32115 * 119.16814 * 359.72995 * 4 3 2 6 6 C 1.32452 * 120.77100 * 0.54537 * 5 4 3 7 7 C 1.48534 * 119.18804 * 179.72074 * 6 5 4 8 8 O 1.21468 * 119.99696 * 179.73219 * 7 6 5 9 9 N 1.34775 * 119.99942 * 359.72544 * 7 6 5 10 10 C 1.46935 * 125.40747 * 0.02964 * 9 7 6 11 11 C 1.54805 * 107.40814 * 181.48336 * 10 9 7 12 12 H 1.09000 * 111.32913 * 219.65676 * 11 10 9 13 13 C 1.50860 * 106.55188 * 97.74999 * 11 10 9 14 14 C 1.52845 * 109.42074 * 192.46374 * 13 11 10 15 15 C 1.52670 * 108.57733 * 65.04709 * 14 13 11 16 16 C 1.51486 * 110.82311 * 299.96270 * 15 14 13 17 17 H 1.09004 * 108.28179 * 285.20770 * 16 15 14 18 18 N 1.46503 * 108.13232 * 168.21699 * 16 15 14 19 19 C 1.36935 * 120.00160 * 79.19449 * 18 16 15 20 20 H 1.07999 * 119.99624 * 359.97438 * 19 18 16 21 21 C 1.38809 * 119.99772 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00375 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99761 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47194 * 59.99714 * 23 21 19 25 25 H 1.48494 * 109.47439 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46850 * 300.00183 * 23 21 19 27 27 C 1.49578 * 115.48966 * 46.76797 * 16 15 14 28 28 H 1.09002 * 107.99821 * 201.47962 * 27 16 15 29 29 C 1.47242 * 125.40276 * 180.02562 * 9 7 6 30 30 N 1.32101 * 120.42272 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47381 * 269.98101 * 1 2 3 32 32 H 1.09002 * 109.47022 * 29.98173 * 1 2 3 33 33 H 1.09011 * 109.47107 * 149.97477 * 1 2 3 34 34 H 1.07999 * 120.74305 * 359.97438 * 3 2 1 35 35 H 1.08009 * 120.41473 * 180.02562 * 4 3 2 36 36 H 1.09002 * 109.88153 * 300.98145 * 10 9 7 37 37 H 1.08996 * 109.87991 * 61.98570 * 10 9 7 38 38 H 1.09004 * 109.62827 * 72.44342 * 13 11 10 39 39 H 1.08995 * 109.47346 * 312.38841 * 13 11 10 40 40 H 1.09002 * 109.61831 * 305.32007 * 14 13 11 41 41 H 1.09001 * 109.62273 * 184.77487 * 14 13 11 42 42 H 1.09006 * 109.20832 * 179.61971 * 15 14 13 43 43 H 1.08997 * 109.21140 * 60.31228 * 15 14 13 44 44 H 0.97007 * 119.99546 * 259.19193 * 18 16 15 45 45 H 0.96994 * 119.99737 * 179.97438 * 22 21 19 46 46 H 1.09003 * 110.24231 * 317.56678 * 29 9 7 47 47 H 1.09005 * 110.23744 * 79.55399 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2098 1.1971 0.0000 4 6 3.5969 1.1508 -0.0005 5 7 4.2019 -0.0237 0.0044 6 6 3.5005 -1.1473 -0.0010 7 6 4.2170 -2.4484 -0.0015 8 8 3.5884 -3.4878 -0.0015 9 7 5.5645 -2.4757 -0.0021 10 6 6.4399 -1.2955 -0.0016 11 6 7.9018 -1.8033 -0.0408 12 1 8.5465 -1.2054 0.6034 13 6 8.3413 -1.7370 -1.4824 14 6 9.6520 -2.5052 -1.6500 15 6 9.3902 -3.9819 -1.3644 16 6 8.8763 -4.1745 0.0476 17 1 9.7130 -4.0530 0.7356 18 7 8.3804 -5.5477 0.1690 19 6 9.2614 -6.5802 0.3508 20 1 10.3217 -6.3822 0.4042 21 6 8.7915 -7.8813 0.4652 22 7 7.4993 -8.1226 0.3996 23 14 9.9933 -9.2899 0.7125 24 1 10.7588 -9.0731 1.9665 25 1 9.2448 -10.5691 0.8038 26 1 10.9321 -9.3471 -0.4368 27 6 7.7844 -3.2425 0.4678 28 1 7.7709 -3.2091 1.5572 29 6 6.3930 -3.6928 -0.0031 30 7 2.1759 -1.1391 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3634 -0.8898 -0.5143 34 1 1.6889 2.1432 -0.0004 35 1 4.1745 2.0635 -0.0001 36 1 6.2366 -0.6829 -0.8800 37 1 6.2744 -0.7116 0.9037 38 1 8.4909 -0.6969 -1.7722 39 1 7.5756 -2.1837 -2.1166 40 1 10.3928 -2.1223 -0.9480 41 1 10.0166 -2.3888 -2.6706 42 1 10.3179 -4.5409 -1.4876 43 1 8.6495 -4.3579 -2.0700 44 1 7.4280 -5.7255 0.1206 45 1 7.1712 -9.0319 0.4792 46 1 5.9815 -4.4298 0.6867 47 1 6.4515 -4.1083 -1.0092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992716175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:21 Heat of formation + Delta-G solvation = 12.275858 kcal Electronic energy + Delta-G solvation = -28764.590082 eV Core-core repulsion = 24946.843383 eV Total energy + Delta-G solvation = -3817.746699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.46063 -41.51472 -39.74703 -37.11437 -35.74005 -35.37590 -33.75160 -33.46146 -32.00424 -30.56364 -29.51564 -28.16172 -27.05634 -25.72950 -24.81981 -24.05535 -22.86015 -22.12831 -21.21386 -19.69035 -19.25302 -18.80689 -18.18255 -17.41874 -17.16822 -16.73750 -16.66990 -16.46359 -15.71863 -15.47940 -15.43707 -15.15923 -14.96325 -14.76157 -14.25805 -14.19853 -14.02570 -13.90492 -13.83420 -13.47053 -13.19179 -13.13912 -12.80514 -12.76420 -12.53081 -12.31300 -12.16832 -12.13011 -11.98077 -11.87419 -11.73932 -11.29542 -11.26707 -11.12436 -10.94428 -10.71824 -10.57995 -10.32098 -9.76126 -8.99145 -7.91934 -5.21444 -0.63682 0.06310 1.45006 1.47538 1.48391 1.49214 1.54948 2.56231 2.72847 2.76278 3.06675 3.40520 3.43607 3.50746 3.54636 3.76360 3.78213 4.05505 4.12661 4.20064 4.30270 4.31234 4.33857 4.41778 4.51829 4.59966 4.63215 4.69053 4.70249 4.77058 4.82526 4.87448 4.93415 4.98491 5.05943 5.10483 5.21539 5.22370 5.33475 5.38039 5.38725 5.48628 5.54062 5.60739 5.75618 5.92378 6.27395 6.29313 6.72146 6.99037 7.34417 8.11639 8.32838 9.31524 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.003074 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.800871 B = 9105.017998 C =10457.836213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.147 3.853 3 C -0.182 4.182 4 C 0.141 3.859 5 N -0.494 5.494 6 C 0.270 3.730 7 C 0.577 3.423 8 O -0.565 6.565 9 N -0.590 5.590 10 C 0.122 3.878 11 C -0.079 4.079 12 H 0.129 0.871 13 C -0.106 4.106 14 C -0.107 4.107 15 C -0.123 4.123 16 C 0.189 3.811 17 H 0.046 0.954 18 N -0.747 5.747 19 C -0.234 4.234 20 H 0.080 0.920 21 C -0.082 4.082 22 N -0.975 5.975 23 Si 0.973 3.027 24 H -0.276 1.276 25 H -0.301 1.301 26 H -0.277 1.277 27 C -0.080 4.080 28 H 0.067 0.933 29 C 0.129 3.871 30 N -0.515 5.515 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.066 0.934 34 H 0.204 0.796 35 H 0.226 0.774 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.040 0.960 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.030 0.970 44 H 0.371 0.629 45 H 0.248 0.752 46 H 0.042 0.958 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.551 31.229 -2.126 31.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.001 3.999 3 C -0.203 4.203 4 C -0.024 4.024 5 N -0.213 5.213 6 C 0.001 3.999 7 C 0.362 3.638 8 O -0.441 6.441 9 N -0.322 5.322 10 C 0.001 3.999 11 C -0.099 4.099 12 H 0.147 0.853 13 C -0.143 4.143 14 C -0.145 4.145 15 C -0.163 4.163 16 C 0.081 3.919 17 H 0.064 0.936 18 N -0.388 5.388 19 C -0.366 4.366 20 H 0.098 0.902 21 C -0.274 4.274 22 N -0.626 5.626 23 Si 0.802 3.198 24 H -0.202 1.202 25 H -0.227 1.227 26 H -0.203 1.203 27 C -0.099 4.099 28 H 0.086 0.914 29 C 0.006 3.994 30 N -0.233 5.233 31 H 0.115 0.885 32 H 0.138 0.862 33 H 0.085 0.915 34 H 0.221 0.779 35 H 0.242 0.758 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.204 0.796 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.323 29.690 -2.073 30.426 hybrid contribution -0.599 -1.503 0.154 1.625 sum -6.922 28.187 -1.918 29.088 Atomic orbital electron populations 1.20945 0.85205 1.05233 1.04827 1.22597 0.99506 0.87733 0.90036 1.23557 0.96554 1.01299 0.98880 1.24276 0.93263 0.96130 0.88702 1.68556 1.40961 0.98955 1.12779 1.22031 0.87574 0.92354 0.97982 1.17563 0.81244 0.87093 0.77861 1.90795 1.67197 1.34744 1.51395 1.48262 1.03924 1.10148 1.69884 1.22636 0.87365 0.85786 1.04071 1.21740 0.95909 0.93411 0.98799 0.85300 1.21230 0.96770 1.01773 0.94555 1.21406 0.97918 0.93067 1.02140 1.21720 0.99678 0.97482 0.97456 1.19302 0.94147 0.83069 0.95350 0.93623 1.43006 1.06178 1.02205 1.87411 1.19616 0.90500 0.87220 1.39240 0.90233 1.25603 0.97384 1.00180 1.04229 1.69854 1.13542 1.19641 1.59552 0.85213 0.77846 0.78426 0.78305 1.20184 1.22725 1.20279 1.21039 0.91942 0.96189 1.00775 0.91434 1.21700 0.90900 0.86642 1.00189 1.67980 1.08907 1.33576 1.12818 0.88462 0.86177 0.91474 0.77941 0.75772 0.88784 0.89617 0.88123 0.94120 0.90150 0.91128 0.93703 0.95107 0.79618 0.94315 0.93964 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.22 71.23 0.73 -0.39 16 2 C 0.15 2.63 6.82 42.66 0.29 2.92 16 3 C -0.18 -1.66 9.87 22.54 0.22 -1.44 16 4 C 0.14 1.52 11.30 84.78 0.96 2.48 16 5 N -0.49 -10.44 6.81 -189.10 -1.29 -11.73 16 6 C 0.27 8.30 7.57 137.68 1.04 9.34 16 7 C 0.58 22.65 7.88 86.99 0.69 23.34 16 8 O -0.56 -27.88 17.16 -3.62 -0.06 -27.95 16 9 N -0.59 -20.38 3.33 -816.65 -2.72 -23.10 16 10 C 0.12 2.88 4.79 86.91 0.42 3.30 16 11 C -0.08 -1.78 3.25 -10.84 -0.04 -1.82 16 12 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 13 C -0.11 -2.22 4.66 29.85 0.14 -2.08 16 14 C -0.11 -2.52 5.93 30.43 0.18 -2.34 16 15 C -0.12 -4.33 5.29 29.99 0.16 -4.17 16 16 C 0.19 7.41 2.57 43.40 0.11 7.52 16 17 H 0.05 1.78 8.06 -2.39 -0.02 1.76 16 18 N -0.75 -39.09 4.97 -330.56 -1.64 -40.73 16 19 C -0.23 -13.34 9.79 84.03 0.82 -12.51 16 20 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 21 C -0.08 -4.94 5.50 84.86 0.47 -4.47 16 22 N -0.97 -63.61 13.06 21.65 0.28 -63.33 16 23 Si 0.97 48.10 29.55 68.60 2.03 50.12 16 24 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 25 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 27 C -0.08 -2.66 2.47 -11.64 -0.03 -2.69 16 28 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 29 C 0.13 5.17 4.70 86.45 0.41 5.58 16 30 N -0.52 -15.43 10.07 -177.25 -1.78 -17.21 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.12 0.35 8.10 -2.39 -0.02 0.33 16 33 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.20 -0.26 8.06 -2.91 -0.02 -0.28 16 35 H 0.23 0.09 8.06 -2.91 -0.02 0.06 16 36 H 0.09 1.94 6.86 -2.39 -0.02 1.93 16 37 H 0.09 1.79 7.52 -2.39 -0.02 1.77 16 38 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.04 1.05 7.91 -2.39 -0.02 1.03 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.37 21.42 5.67 -92.70 -0.53 20.89 16 45 H 0.25 15.84 8.31 -92.71 -0.77 15.07 16 46 H 0.04 2.04 7.59 -2.39 -0.02 2.03 16 47 H 0.05 2.25 8.01 -2.38 -0.02 2.23 16 Total: -1.00 -87.78 374.13 1.83 -85.96 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.45 Total: 25.41 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: 6.56 Total: 22.56 kcal Atomic # 7 Polarization: -148.95 SS G_CDS: -7.15 Total: -156.10 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.06 Total: -27.95 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.12 kcal Total: -87.78 1.83 -85.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992716175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.231 kcal (2) G-P(sol) polarization free energy of solvation -87.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds