Wall clock time and date at job start Tue Mar 31 2020 16:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 113.31143 * 2 1 4 4 C 1.55781 * 114.07832 * 132.78814 * 2 1 3 5 5 H 1.08997 * 114.29467 * 323.02705 * 4 2 1 6 6 N 1.46507 * 114.12106 * 190.48375 * 4 2 1 7 7 C 1.34778 * 119.99873 * 161.63219 * 6 4 2 8 8 O 1.21516 * 119.99847 * 359.72174 * 7 6 4 9 9 C 1.48155 * 119.99879 * 179.72680 * 7 6 4 10 10 C 1.39717 * 120.17793 * 179.72250 * 9 7 6 11 11 C 1.38829 * 117.89391 * 179.80465 * 10 9 7 12 12 C 1.38570 * 118.07015 * 0.44094 * 11 10 9 13 13 N 1.32177 * 120.06633 * 359.78944 * 12 11 10 14 14 N 1.28357 * 122.29803 * 359.97438 * 13 12 11 15 15 C 1.50010 * 83.86206 * 76.76470 * 4 2 1 16 16 H 1.08989 * 112.50831 * 283.86976 * 15 4 2 17 17 C 1.51209 * 126.15891 * 141.47182 * 15 4 2 18 18 C 1.55150 * 105.66887 * 198.22100 * 17 15 4 19 19 C 1.52500 * 112.59073 * 55.75670 * 18 17 15 20 20 N 1.48410 * 111.86640 * 313.00114 * 19 18 17 21 21 C 1.36935 * 123.17366 * 231.81870 * 20 19 18 22 22 H 1.07997 * 120.00315 * 153.47555 * 21 20 19 23 23 C 1.38821 * 119.99716 * 333.48253 * 21 20 19 24 24 N 1.31615 * 119.99662 * 348.46574 * 23 21 20 25 25 Si 1.86798 * 119.99714 * 168.47225 * 23 21 20 26 26 H 1.48493 * 109.47237 * 59.99524 * 25 23 21 27 27 H 1.48496 * 109.46880 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46945 * 299.99281 * 25 23 21 29 29 C 1.45379 * 113.66007 * 51.84729 * 20 19 18 30 30 H 1.09000 * 112.09399 * 59.74149 * 29 20 19 31 31 H 1.09001 * 109.47251 * 278.32416 * 1 2 3 32 32 H 1.09007 * 109.46801 * 38.31981 * 1 2 3 33 33 H 1.08998 * 109.47565 * 158.32013 * 1 2 3 34 34 H 1.09000 * 109.46755 * 173.28678 * 3 2 1 35 35 H 1.09006 * 109.46801 * 293.28010 * 3 2 1 36 36 H 1.08990 * 109.47557 * 53.28502 * 3 2 1 37 37 H 0.97001 * 119.99931 * 341.35680 * 6 4 2 38 38 H 1.08003 * 121.05560 * 359.97438 * 10 9 7 39 39 H 1.08005 * 120.96289 * 180.23152 * 11 10 9 40 40 H 1.07993 * 119.96640 * 179.77162 * 12 11 10 41 41 H 1.08996 * 110.10522 * 317.76274 * 17 15 4 42 42 H 1.09002 * 110.10088 * 79.42028 * 17 15 4 43 43 H 1.08994 * 109.04952 * 294.84530 * 18 17 15 44 44 H 1.08996 * 108.63486 * 176.38490 * 18 17 15 45 45 H 1.09007 * 109.00251 * 192.39427 * 19 18 17 46 46 H 1.08996 * 109.00545 * 73.62248 * 19 18 17 47 47 H 0.97004 * 119.99377 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1355 1.4051 0.0000 4 6 2.1656 -0.9661 1.0438 5 1 1.6240 -1.0257 1.9877 6 7 3.6103 -0.7945 1.2165 7 6 4.2198 -1.2795 2.3164 8 8 3.5702 -1.8547 3.1672 9 6 5.6817 -1.1113 2.4883 10 6 6.3164 -1.6075 3.6297 11 6 7.6885 -1.4273 3.7401 12 6 8.3427 -0.7590 2.7176 13 7 7.6627 -0.3175 1.6737 14 7 6.3949 -0.4835 1.5609 15 6 1.7884 -2.0268 0.0523 16 1 0.7222 -2.2524 0.0680 17 6 2.6060 -3.2486 -0.3016 18 6 2.0432 -3.7511 -1.6573 19 6 2.0670 -2.6742 -2.7368 20 7 1.5275 -1.3833 -2.2418 21 6 0.5439 -0.6846 -2.8895 22 1 -0.1047 -0.0239 -2.3336 23 6 0.3806 -0.8256 -4.2609 24 7 1.2989 -1.4439 -4.9728 25 14 -1.1423 -0.1377 -5.0956 26 1 -1.2074 1.3294 -4.8755 27 1 -1.0768 -0.4167 -6.5527 28 1 -2.3531 -0.7785 -4.5224 29 6 2.1420 -0.9301 -1.0046 30 1 3.2175 -0.7872 -1.1094 31 1 -0.3634 0.1488 1.0168 32 1 -0.3633 0.8063 -0.6373 33 1 -0.3634 -0.9549 -0.3796 34 1 3.2166 1.3348 0.1201 35 1 1.9063 1.8995 -0.9441 36 1 1.7152 1.9819 0.8237 37 1 4.1288 -0.3353 0.5374 38 1 5.7578 -2.1177 4.4005 39 1 8.2298 -1.7942 4.5997 40 1 9.4092 -0.5986 2.7737 41 1 3.6581 -2.9805 -0.3974 42 1 2.4820 -4.0164 0.4621 43 1 1.0151 -4.0836 -1.5143 44 1 2.6432 -4.5976 -1.9911 45 1 1.4677 -3.0077 -3.5841 46 1 3.0949 -2.5258 -3.0675 47 1 1.1849 -1.5421 -5.9311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087311931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:41 Heat of formation + Delta-G solvation = 99.258000 kcal Electronic energy + Delta-G solvation = -29579.652734 eV Core-core repulsion = 25765.677863 eV Total energy + Delta-G solvation = -3813.974871 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.53824 -40.97954 -38.75452 -35.26537 -33.79125 -33.33375 -32.98554 -32.47569 -30.13160 -29.30347 -27.17128 -26.15996 -25.57801 -24.90411 -24.25339 -22.36594 -21.45831 -20.44780 -19.25035 -18.53093 -18.17680 -17.42064 -16.91410 -16.66337 -15.65505 -15.46778 -14.95698 -14.76806 -14.42202 -14.10325 -13.98534 -13.76746 -13.69558 -13.50468 -13.31290 -12.73619 -12.52388 -12.37749 -12.03830 -11.79799 -11.75125 -11.31764 -11.11781 -11.05175 -10.81875 -10.65899 -10.64497 -10.43595 -10.37604 -10.25158 -10.15557 -10.07723 -10.01982 -9.87905 -9.83149 -9.28484 -8.85675 -8.71922 -8.37449 -6.53314 -5.71236 -3.15421 0.17317 0.41775 2.52841 2.92564 3.39889 3.43307 3.45858 3.46097 3.64466 4.09792 4.29128 4.34950 4.51586 4.62755 4.69967 4.79149 4.99633 5.18092 5.30648 5.33395 5.49044 5.50995 5.60399 5.72372 5.79903 5.89239 5.90903 5.96319 6.05373 6.08088 6.28920 6.30556 6.40061 6.41941 6.47441 6.59835 6.64051 6.66792 6.76811 6.81847 6.89850 7.05698 7.15934 7.46150 7.51815 7.74631 7.84972 8.09901 8.27146 8.46152 9.22596 9.88214 10.53815 11.36351 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018644 B = 0.003405 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.452855 B = 8222.381052 C = 8373.979061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.066 4.066 3 C -0.135 4.135 4 C 0.137 3.863 5 H 0.097 0.903 6 N -0.676 5.676 7 C 0.575 3.425 8 O -0.531 6.531 9 C 0.029 3.971 10 C -0.067 4.067 11 C -0.123 4.123 12 C 0.052 3.948 13 N -0.239 5.239 14 N -0.208 5.208 15 C -0.172 4.172 16 H 0.102 0.898 17 C -0.086 4.086 18 C -0.135 4.135 19 C 0.166 3.834 20 N -0.571 5.571 21 C -0.242 4.242 22 H 0.076 0.924 23 C -0.001 4.001 24 N -0.908 5.908 25 Si 0.900 3.100 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.285 1.285 29 C 0.151 3.849 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.413 0.587 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.178 0.822 41 H 0.049 0.951 42 H 0.041 0.959 43 H 0.050 0.950 44 H 0.046 0.954 45 H 0.093 0.907 46 H 0.013 0.987 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.362 0.089 17.204 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.067 4.067 3 C -0.193 4.193 4 C 0.032 3.968 5 H 0.115 0.885 6 N -0.327 5.327 7 C 0.358 3.642 8 O -0.407 6.407 9 C -0.117 4.117 10 C -0.096 4.096 11 C -0.152 4.152 12 C -0.111 4.111 13 N -0.082 5.082 14 N -0.055 5.055 15 C -0.193 4.193 16 H 0.120 0.880 17 C -0.123 4.123 18 C -0.174 4.174 19 C 0.041 3.959 20 N -0.292 5.292 21 C -0.371 4.371 22 H 0.094 0.906 23 C -0.199 4.199 24 N -0.553 5.553 25 Si 0.731 3.269 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.211 1.211 29 C 0.042 3.958 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.251 0.749 38 H 0.180 0.820 39 H 0.175 0.825 40 H 0.195 0.805 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.111 0.889 46 H 0.031 0.969 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.841 0.464 16.073 18.852 hybrid contribution -0.221 -0.284 0.462 0.586 sum 9.620 0.179 16.536 19.131 Atomic orbital electron populations 1.21645 0.91763 1.03856 1.00110 1.21875 0.96654 0.93468 0.94676 1.21695 0.99724 0.95932 1.01904 1.21650 0.79318 0.97758 0.98098 0.88476 1.45620 1.09111 1.56406 1.21538 1.17496 0.84700 0.79502 0.82532 1.90788 1.64687 1.42497 1.42732 1.22962 0.96825 0.98120 0.93805 1.22462 0.94976 0.94879 0.97293 1.22464 0.94639 0.97639 1.00479 1.24539 1.02749 0.93165 0.90641 1.73194 1.00508 1.14388 1.20066 1.73282 1.00861 1.08549 1.22814 1.23338 1.01024 0.96240 0.98704 0.88032 1.21219 0.98235 0.96322 0.96550 1.22287 0.99660 0.99280 0.96199 1.20866 0.97461 0.83442 0.94154 1.43903 1.41620 1.18853 1.24819 1.19274 1.06616 1.21968 0.89231 0.90607 1.25101 0.97838 1.00538 0.96394 1.69943 1.32910 1.46659 1.05784 0.86400 0.83143 0.78900 0.78505 1.21001 1.21775 1.21116 1.21748 0.94304 0.92545 0.87210 0.93646 0.93780 0.91722 0.90500 0.93190 0.91613 0.93155 0.74876 0.81953 0.82477 0.80532 0.93205 0.94024 0.93123 0.93521 0.88860 0.96870 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 7.28 37.16 0.27 -1.65 16 2 C -0.07 -1.10 1.38 -159.14 -0.22 -1.32 16 3 C -0.14 -2.08 9.10 37.16 0.34 -1.74 16 4 C 0.14 2.19 3.90 -71.82 -0.28 1.91 16 5 H 0.10 1.56 7.60 -51.93 -0.39 1.16 16 6 N -0.68 -10.17 4.32 -58.49 -0.25 -10.42 16 7 C 0.58 8.53 7.82 -12.19 -0.10 8.43 16 8 O -0.53 -8.90 16.07 5.35 0.09 -8.82 16 9 C 0.03 0.37 6.83 -82.84 -0.57 -0.19 16 10 C -0.07 -0.63 9.73 -38.81 -0.38 -1.00 16 11 C -0.12 -0.80 10.20 -39.24 -0.40 -1.20 16 12 C 0.05 0.40 11.31 -17.28 -0.20 0.21 16 13 N -0.24 -2.88 11.51 30.58 0.35 -2.53 16 14 N -0.21 -2.83 10.75 33.32 0.36 -2.47 16 15 C -0.17 -3.08 2.94 -95.82 -0.28 -3.36 16 16 H 0.10 1.92 6.10 -51.93 -0.32 1.60 16 17 C -0.09 -1.54 6.01 -26.50 -0.16 -1.70 16 18 C -0.14 -2.65 5.93 -25.85 -0.15 -2.80 16 19 C 0.17 3.93 5.32 -3.24 -0.02 3.91 16 20 N -0.57 -13.63 2.86 -169.40 -0.48 -14.12 16 21 C -0.24 -6.27 9.04 -15.06 -0.14 -6.41 16 22 H 0.08 1.88 5.18 -52.49 -0.27 1.61 16 23 C 0.00 -0.02 5.15 -17.43 -0.09 -0.11 16 24 N -0.91 -25.99 10.94 55.49 0.61 -25.38 16 25 Si 0.90 21.44 29.57 -169.99 -5.03 16.41 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 C 0.15 2.99 2.90 -72.12 -0.21 2.78 16 30 H 0.05 0.96 6.60 -51.93 -0.34 0.61 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.10 7.06 -51.92 -0.37 0.73 16 33 H 0.08 1.41 5.69 -51.93 -0.30 1.12 16 34 H 0.05 0.73 6.43 -51.93 -0.33 0.39 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.41 6.20 5.54 -40.82 -0.23 5.97 16 38 H 0.16 1.31 7.72 -52.48 -0.41 0.91 16 39 H 0.16 0.40 8.06 -52.48 -0.42 -0.02 16 40 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.05 0.91 7.97 -51.93 -0.41 0.50 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 2.48 6.03 -51.93 -0.31 2.17 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 365.50 15.07 5.51 5.51 Total: -1.00 -31.21 365.50 -8.04 -39.26 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.62 Total: 6.81 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.57 Total: -4.25 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.58 Total: -54.92 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.21 -8.04 -39.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087311931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.514 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds