Wall clock time and date at job start Tue Mar 31 2020 16:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 113.31143 * 2 1 4 4 C 1.55781 * 114.07832 * 132.78814 * 2 1 3 5 5 H 1.08997 * 114.29467 * 323.02705 * 4 2 1 6 6 N 1.46507 * 114.12106 * 190.48375 * 4 2 1 7 7 C 1.34778 * 119.99873 * 161.63219 * 6 4 2 8 8 O 1.21516 * 119.99847 * 359.72174 * 7 6 4 9 9 C 1.48155 * 119.99879 * 179.72680 * 7 6 4 10 10 C 1.39717 * 120.17793 * 179.72250 * 9 7 6 11 11 C 1.38829 * 117.89391 * 179.80465 * 10 9 7 12 12 C 1.38570 * 118.07015 * 0.44094 * 11 10 9 13 13 N 1.32177 * 120.06633 * 359.78944 * 12 11 10 14 14 N 1.28357 * 122.29803 * 359.97438 * 13 12 11 15 15 C 1.50010 * 83.86206 * 76.76470 * 4 2 1 16 16 H 1.08989 * 112.50831 * 283.86976 * 15 4 2 17 17 C 1.51209 * 126.15891 * 141.47182 * 15 4 2 18 18 C 1.55150 * 105.66887 * 198.22100 * 17 15 4 19 19 C 1.52500 * 112.59073 * 55.75670 * 18 17 15 20 20 N 1.48410 * 111.86640 * 313.00114 * 19 18 17 21 21 C 1.36935 * 123.17366 * 231.81870 * 20 19 18 22 22 H 1.07997 * 120.00315 * 153.47555 * 21 20 19 23 23 C 1.38821 * 119.99716 * 333.48253 * 21 20 19 24 24 N 1.31615 * 119.99662 * 348.46574 * 23 21 20 25 25 Si 1.86798 * 119.99714 * 168.47225 * 23 21 20 26 26 H 1.48493 * 109.47237 * 59.99524 * 25 23 21 27 27 H 1.48496 * 109.46880 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46945 * 299.99281 * 25 23 21 29 29 C 1.45379 * 113.66007 * 51.84729 * 20 19 18 30 30 H 1.09000 * 112.09399 * 59.74149 * 29 20 19 31 31 H 1.09001 * 109.47251 * 278.32416 * 1 2 3 32 32 H 1.09007 * 109.46801 * 38.31981 * 1 2 3 33 33 H 1.08998 * 109.47565 * 158.32013 * 1 2 3 34 34 H 1.09000 * 109.46755 * 173.28678 * 3 2 1 35 35 H 1.09006 * 109.46801 * 293.28010 * 3 2 1 36 36 H 1.08990 * 109.47557 * 53.28502 * 3 2 1 37 37 H 0.97001 * 119.99931 * 341.35680 * 6 4 2 38 38 H 1.08003 * 121.05560 * 359.97438 * 10 9 7 39 39 H 1.08005 * 120.96289 * 180.23152 * 11 10 9 40 40 H 1.07993 * 119.96640 * 179.77162 * 12 11 10 41 41 H 1.08996 * 110.10522 * 317.76274 * 17 15 4 42 42 H 1.09002 * 110.10088 * 79.42028 * 17 15 4 43 43 H 1.08994 * 109.04952 * 294.84530 * 18 17 15 44 44 H 1.08996 * 108.63486 * 176.38490 * 18 17 15 45 45 H 1.09007 * 109.00251 * 192.39427 * 19 18 17 46 46 H 1.08996 * 109.00545 * 73.62248 * 19 18 17 47 47 H 0.97004 * 119.99377 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1355 1.4051 0.0000 4 6 2.1656 -0.9661 1.0438 5 1 1.6240 -1.0257 1.9877 6 7 3.6103 -0.7945 1.2165 7 6 4.2198 -1.2795 2.3164 8 8 3.5702 -1.8547 3.1672 9 6 5.6817 -1.1113 2.4883 10 6 6.3164 -1.6075 3.6297 11 6 7.6885 -1.4273 3.7401 12 6 8.3427 -0.7590 2.7176 13 7 7.6627 -0.3175 1.6737 14 7 6.3949 -0.4835 1.5609 15 6 1.7884 -2.0268 0.0523 16 1 0.7222 -2.2524 0.0680 17 6 2.6060 -3.2486 -0.3016 18 6 2.0432 -3.7511 -1.6573 19 6 2.0670 -2.6742 -2.7368 20 7 1.5275 -1.3833 -2.2418 21 6 0.5439 -0.6846 -2.8895 22 1 -0.1047 -0.0239 -2.3336 23 6 0.3806 -0.8256 -4.2609 24 7 1.2989 -1.4439 -4.9728 25 14 -1.1423 -0.1377 -5.0956 26 1 -1.2074 1.3294 -4.8755 27 1 -1.0768 -0.4167 -6.5527 28 1 -2.3531 -0.7785 -4.5224 29 6 2.1420 -0.9301 -1.0046 30 1 3.2175 -0.7872 -1.1094 31 1 -0.3634 0.1488 1.0168 32 1 -0.3633 0.8063 -0.6373 33 1 -0.3634 -0.9549 -0.3796 34 1 3.2166 1.3348 0.1201 35 1 1.9063 1.8995 -0.9441 36 1 1.7152 1.9819 0.8237 37 1 4.1288 -0.3353 0.5374 38 1 5.7578 -2.1177 4.4005 39 1 8.2298 -1.7942 4.5997 40 1 9.4092 -0.5986 2.7737 41 1 3.6581 -2.9805 -0.3974 42 1 2.4820 -4.0164 0.4621 43 1 1.0151 -4.0836 -1.5143 44 1 2.6432 -4.5976 -1.9911 45 1 1.4677 -3.0077 -3.5841 46 1 3.0949 -2.5258 -3.0675 47 1 1.1849 -1.5421 -5.9311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087311931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:40 Heat of formation + Delta-G solvation = 79.476811 kcal Electronic energy + Delta-G solvation = -29580.510510 eV Core-core repulsion = 25765.677863 eV Total energy + Delta-G solvation = -3814.832647 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.72205 -42.00781 -39.94391 -36.94365 -34.86994 -34.67945 -34.13967 -33.48597 -31.98888 -30.78055 -28.51939 -27.59459 -27.00982 -25.82440 -25.45998 -23.99107 -22.63565 -22.03795 -20.73930 -19.85293 -19.31495 -18.55195 -18.16950 -17.58855 -16.90609 -16.66325 -16.52376 -15.92452 -15.76111 -15.54053 -15.38640 -15.21687 -14.90670 -14.76880 -14.31164 -14.17861 -14.09955 -13.92605 -13.61303 -13.19419 -12.88124 -12.81285 -12.74939 -12.59855 -12.43382 -12.30034 -12.10474 -11.94457 -11.67631 -11.62928 -11.41911 -11.31063 -11.23281 -11.20120 -10.95743 -10.83232 -10.58569 -10.25525 -10.03034 -8.48884 -7.75414 -5.21890 -0.58872 -0.24628 1.48848 1.50303 1.55734 1.56114 1.85381 2.55688 2.59571 2.78643 3.25473 3.39089 3.42519 3.46315 3.61275 3.69493 3.78715 3.92339 3.94126 4.12883 4.15872 4.23733 4.35269 4.46343 4.54143 4.61753 4.69535 4.74510 4.78620 4.85881 4.87501 4.96029 5.02137 5.09286 5.12578 5.16278 5.17132 5.20187 5.29263 5.33254 5.46790 5.53155 5.55676 5.73136 5.77637 5.81762 6.33419 6.45081 6.94334 7.18888 7.49993 7.91342 8.55741 9.30005 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018644 B = 0.003405 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.452855 B = 8222.381052 C = 8373.979061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.062 4.062 3 C -0.130 4.130 4 C 0.154 3.846 5 H 0.107 0.893 6 N -0.678 5.678 7 C 0.578 3.422 8 O -0.553 6.553 9 C 0.007 3.993 10 C -0.075 4.075 11 C -0.097 4.097 12 C 0.058 3.942 13 N -0.277 5.277 14 N -0.241 5.241 15 C -0.160 4.160 16 H 0.096 0.904 17 C -0.078 4.078 18 C -0.125 4.125 19 C 0.173 3.827 20 N -0.585 5.585 21 C -0.237 4.237 22 H 0.087 0.913 23 C -0.060 4.060 24 N -0.944 5.944 25 Si 0.960 3.040 26 H -0.276 1.276 27 H -0.302 1.302 28 H -0.278 1.278 29 C 0.134 3.866 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.412 0.588 38 H 0.175 0.825 39 H 0.208 0.792 40 H 0.219 0.781 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.060 0.940 46 H -0.015 1.015 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.372 0.292 20.601 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.063 4.063 3 C -0.188 4.188 4 C 0.048 3.952 5 H 0.125 0.875 6 N -0.328 5.328 7 C 0.362 3.638 8 O -0.430 6.430 9 C -0.140 4.140 10 C -0.103 4.103 11 C -0.125 4.125 12 C -0.105 4.105 13 N -0.119 5.119 14 N -0.087 5.087 15 C -0.181 4.181 16 H 0.114 0.886 17 C -0.116 4.116 18 C -0.164 4.164 19 C 0.048 3.952 20 N -0.307 5.307 21 C -0.367 4.367 22 H 0.105 0.895 23 C -0.254 4.254 24 N -0.591 5.591 25 Si 0.789 3.211 26 H -0.202 1.202 27 H -0.228 1.228 28 H -0.204 1.204 29 C 0.026 3.974 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.250 0.750 38 H 0.192 0.808 39 H 0.225 0.775 40 H 0.235 0.765 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.003 0.997 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.856 0.684 19.501 22.329 hybrid contribution -0.369 -0.361 -0.489 0.711 sum 10.486 0.323 19.012 21.715 Atomic orbital electron populations 1.21581 0.91270 1.02387 1.01762 1.21903 0.97037 0.94056 0.93290 1.21648 1.00116 0.95061 1.01951 1.21419 0.80144 0.95901 0.97692 0.87543 1.45602 1.08607 1.56692 1.21907 1.17808 0.85740 0.78502 0.81738 1.90762 1.65558 1.43428 1.43290 1.22762 0.95570 1.00120 0.95505 1.22723 0.96476 0.94768 0.96379 1.23004 0.93304 0.95149 1.01064 1.25265 1.04427 0.91371 0.89389 1.73095 1.00117 1.16208 1.22525 1.73189 1.01895 1.09789 1.23865 1.23272 1.00721 0.95715 0.98393 0.88586 1.21134 0.97780 0.96860 0.95795 1.22116 1.00227 0.98177 0.95862 1.20656 0.94949 0.84842 0.94733 1.44096 1.41716 1.19168 1.25682 1.19697 1.06689 1.20884 0.89382 0.89508 1.25817 1.00444 1.01880 0.97264 1.70131 1.34786 1.48893 1.05330 0.85439 0.80297 0.78542 0.76810 1.20206 1.22831 1.20422 1.21971 0.93742 0.95544 0.86113 0.94850 0.90681 0.92433 0.92524 0.92782 0.93276 0.90743 0.74973 0.80804 0.77520 0.76456 0.93688 0.92288 0.93025 0.91955 0.92155 0.99722 0.94666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.58 7.28 71.98 0.52 -3.05 16 2 C -0.06 -2.03 1.38 -55.18 -0.08 -2.10 16 3 C -0.13 -3.89 9.10 71.98 0.66 -3.23 16 4 C 0.15 4.76 3.90 42.47 0.17 4.92 16 5 H 0.11 3.18 7.60 -2.39 -0.02 3.16 16 6 N -0.68 -20.05 4.32 -457.27 -1.97 -22.02 16 7 C 0.58 16.67 7.82 86.88 0.68 17.34 16 8 O -0.55 -17.81 16.07 -3.77 -0.06 -17.87 16 9 C 0.01 0.18 6.83 42.00 0.29 0.47 16 10 C -0.07 -1.21 9.73 22.77 0.22 -0.99 16 11 C -0.10 -0.84 10.20 22.49 0.23 -0.62 16 12 C 0.06 0.70 11.31 84.72 0.96 1.66 16 13 N -0.28 -6.34 11.51 -57.15 -0.66 -7.00 16 14 N -0.24 -6.47 10.75 -48.49 -0.52 -6.99 16 15 C -0.16 -5.65 2.94 -14.16 -0.04 -5.69 16 16 H 0.10 3.55 6.10 -2.39 -0.01 3.54 16 17 C -0.08 -2.78 6.01 30.75 0.18 -2.59 16 18 C -0.12 -4.94 5.93 31.17 0.18 -4.75 16 19 C 0.17 8.60 5.32 85.85 0.46 9.05 16 20 N -0.58 -28.79 2.86 -689.86 -1.97 -30.77 16 21 C -0.24 -12.54 9.04 84.04 0.76 -11.78 16 22 H 0.09 4.33 5.18 -2.91 -0.02 4.32 16 23 C -0.06 -3.35 5.15 84.86 0.44 -2.92 16 24 N -0.94 -56.52 10.94 21.65 0.24 -56.28 16 25 Si 0.96 45.11 29.57 68.60 2.03 47.14 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 27 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 28 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 29 C 0.13 5.39 2.90 42.88 0.12 5.52 16 30 H 0.03 1.46 6.60 -2.39 -0.02 1.44 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.89 7.06 -2.38 -0.02 1.87 16 33 H 0.06 2.03 5.69 -2.39 -0.01 2.02 16 34 H 0.05 1.55 6.43 -2.39 -0.02 1.53 16 35 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.41 12.51 5.54 -92.71 -0.51 11.99 16 38 H 0.17 2.33 7.72 -2.91 -0.02 2.31 16 39 H 0.21 -0.27 8.06 -2.91 -0.02 -0.29 16 40 H 0.22 0.64 8.06 -2.91 -0.02 0.61 16 41 H 0.04 1.64 7.97 -2.39 -0.02 1.63 16 42 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 45 H 0.06 3.39 6.03 -2.38 -0.01 3.37 16 46 H -0.02 -0.83 8.14 -2.39 -0.02 -0.85 16 47 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -71.67 365.50 3.32 -68.35 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.49 Total: 24.18 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 5.75 Total: 1.25 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -4.89 Total: -123.06 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.06 Total: -17.87 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -71.67 3.32 -68.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087311931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.828 kcal (2) G-P(sol) polarization free energy of solvation -71.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds