Wall clock time and date at job start Tue Mar 31 2020 15:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.49876 * 2 1 4 4 N 1.46507 * 109.47505 * 59.93347 * 3 2 1 5 5 C 1.34770 * 120.00431 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00086 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00379 * 180.02562 * 5 4 3 8 8 H 1.09004 * 110.43001 * 300.69747 * 7 5 4 9 9 C 1.54891 * 110.48792 * 63.23277 * 7 5 4 10 10 C 1.55034 * 102.68010 * 156.52177 * 9 7 5 11 11 C 1.54263 * 104.28238 * 322.23487 * 10 9 7 12 12 F 1.39906 * 110.03085 * 264.23539 * 11 10 9 13 13 F 1.39890 * 110.03409 * 142.80349 * 11 10 9 14 14 C 1.53877 * 106.59835 * 23.51953 * 11 10 9 15 15 C 1.53033 * 109.49748 * 239.93106 * 2 1 3 16 16 C 1.53044 * 109.54034 * 301.41486 * 15 2 1 17 17 C 1.53187 * 109.31375 * 298.63686 * 16 15 2 18 18 N 1.46926 * 108.77629 * 54.63309 * 17 16 15 19 19 C 1.36940 * 120.62975 * 126.36813 * 18 17 16 20 20 H 1.07998 * 119.99777 * 332.44347 * 19 18 17 21 21 C 1.38807 * 119.99789 * 152.44646 * 19 18 17 22 22 N 1.31625 * 120.00346 * 342.77062 * 21 19 18 23 23 Si 1.86805 * 120.00059 * 162.77168 * 21 19 18 24 24 H 1.48508 * 109.47035 * 270.00168 * 23 21 19 25 25 H 1.48505 * 109.46972 * 29.99708 * 23 21 19 26 26 H 1.48494 * 109.47363 * 149.99875 * 23 21 19 27 27 C 1.46930 * 118.73855 * 306.64256 * 18 17 16 28 28 H 1.09003 * 109.47562 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47578 * 300.06965 * 1 2 3 30 30 H 1.09010 * 109.46876 * 60.06757 * 1 2 3 31 31 H 1.09001 * 109.47301 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47611 * 299.93368 * 3 2 1 33 33 H 0.97004 * 119.99347 * 359.97438 * 4 3 2 34 34 H 1.08993 * 110.75480 * 274.94128 * 9 7 5 35 35 H 1.09003 * 110.75182 * 38.31365 * 9 7 5 36 36 H 1.09007 * 110.51760 * 203.48881 * 10 9 7 37 37 H 1.08999 * 110.48025 * 80.95804 * 10 9 7 38 38 H 1.09010 * 110.03052 * 240.71656 * 14 11 10 39 39 H 1.09001 * 110.07431 * 119.30861 * 14 11 10 40 40 H 1.09005 * 109.45815 * 181.39827 * 15 2 1 41 41 H 1.08993 * 109.46109 * 61.44117 * 15 2 1 42 42 H 1.09003 * 109.49377 * 178.68184 * 16 15 2 43 43 H 1.08997 * 109.49386 * 58.58698 * 16 15 2 44 44 H 1.09004 * 109.58464 * 294.84792 * 17 16 15 45 45 H 1.08998 * 109.58925 * 174.42372 * 17 16 15 46 46 H 0.97001 * 119.99803 * 179.97438 * 22 21 19 47 47 H 1.08997 * 109.58242 * 173.14315 * 27 18 17 48 48 H 1.08994 * 109.58811 * 293.56959 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 7 1.5514 2.1336 1.1954 5 6 1.8769 3.4239 1.4083 6 8 2.5753 4.0127 0.6105 7 6 1.3741 4.1350 2.6382 8 1 0.2843 4.1334 2.6597 9 6 1.9425 3.4726 3.9177 10 6 1.8582 4.6174 4.9597 11 6 2.2208 5.8864 4.1610 12 9 3.5803 6.1784 4.3164 13 9 1.4454 6.9656 4.5980 14 6 1.9130 5.5797 2.6849 15 6 2.0408 -0.7228 -1.2484 16 6 1.5030 -2.1555 -1.2665 17 6 2.0139 -2.9040 -0.0314 18 7 1.6514 -2.1385 1.1691 19 6 0.9629 -2.7318 2.1934 20 1 0.3083 -3.5667 1.9917 21 6 1.1063 -2.2599 3.4909 22 7 2.1283 -1.4912 3.8025 23 14 -0.1511 -2.7158 4.7950 24 1 -1.2369 -1.7027 4.8113 25 1 -0.7241 -4.0504 4.4850 26 1 0.5077 -2.7568 6.1251 27 6 2.0363 -0.7226 1.2471 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5149 0.8893 30 1 -0.3633 0.5128 -0.8907 31 1 3.1307 1.4417 0.0005 32 1 1.6786 1.9559 -0.8905 33 1 0.9925 1.6628 1.8333 34 1 1.3267 2.6258 4.2204 35 1 2.9771 3.1648 3.7663 36 1 2.5754 4.4552 5.7644 37 1 0.8476 4.6948 5.3605 38 1 2.8228 5.6583 2.0896 39 1 1.1597 6.2716 2.3082 40 1 3.1305 -0.7442 -1.2353 41 1 1.6989 -0.1953 -2.1388 42 1 1.8481 -2.6623 -2.1677 43 1 0.4132 -2.1351 -1.2546 44 1 3.0978 -3.0043 -0.0874 45 1 1.5553 -3.8919 0.0128 46 1 2.2283 -1.1612 4.7092 47 1 1.5925 -0.2717 2.1346 48 1 3.1221 -0.6414 1.2975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754728511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:15 Heat of formation + Delta-G solvation = -139.699304 kcal Electronic energy + Delta-G solvation = -30241.530824 eV Core-core repulsion = 25966.504801 eV Total energy + Delta-G solvation = -4275.026023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.99553 -47.06736 -40.06072 -38.58151 -36.63423 -34.83471 -33.26444 -31.48492 -29.97384 -29.50768 -28.33574 -26.55747 -25.55464 -25.23994 -22.60646 -22.00869 -21.19753 -20.53202 -19.82677 -18.16691 -17.80943 -17.24103 -16.77484 -16.50595 -15.96028 -15.61615 -15.27766 -14.79083 -14.33302 -14.26579 -14.16226 -13.96126 -13.83843 -13.57486 -13.40049 -13.25493 -13.16275 -12.81162 -12.43738 -12.26520 -12.18336 -11.98440 -11.92419 -11.66102 -11.50046 -11.36259 -11.05589 -11.02388 -10.92641 -10.81513 -10.71015 -10.44993 -10.23514 -10.14971 -9.89554 -9.76650 -9.53221 -9.43837 -8.77388 -8.55653 -6.73820 -5.87628 -3.29395 2.75136 3.26236 3.28237 3.37554 3.38128 3.66470 3.87936 3.97138 4.29369 4.40672 4.75322 4.90488 4.94327 5.05846 5.07968 5.13034 5.22497 5.26005 5.39098 5.45750 5.52656 5.53646 5.67761 5.72813 5.82287 5.90393 5.92621 5.97826 6.00189 6.04219 6.11888 6.20668 6.36112 6.38994 6.49279 6.56577 6.70454 6.78349 6.83196 6.91413 6.99091 7.22755 7.50389 7.71117 7.73669 8.35275 8.38460 9.12693 9.75854 10.33351 11.20237 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.003921 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.022744 B = 7139.698078 C = 8834.865036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.136 3.864 4 N -0.712 5.712 5 C 0.520 3.480 6 O -0.549 6.549 7 C -0.113 4.113 8 H 0.110 0.890 9 C -0.113 4.113 10 C -0.159 4.159 11 C 0.281 3.719 12 F -0.197 7.197 13 F -0.202 7.202 14 C -0.150 4.150 15 C -0.095 4.095 16 C -0.135 4.135 17 C 0.143 3.857 18 N -0.589 5.589 19 C -0.248 4.248 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.897 3.103 24 H -0.288 1.288 25 H -0.279 1.279 26 H -0.292 1.292 27 C 0.186 3.814 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.407 0.593 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.017 0.983 45 H 0.052 0.948 46 H 0.253 0.747 47 H 0.089 0.911 48 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 10.016 -2.721 10.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.105 4.105 3 C 0.012 3.988 4 N -0.363 5.363 5 C 0.305 3.695 6 O -0.427 6.427 7 C -0.134 4.134 8 H 0.128 0.872 9 C -0.151 4.151 10 C -0.197 4.197 11 C 0.244 3.756 12 F -0.178 7.178 13 F -0.183 7.183 14 C -0.188 4.188 15 C -0.133 4.133 16 C -0.174 4.174 17 C 0.017 3.983 18 N -0.311 5.311 19 C -0.378 4.378 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.727 3.273 24 H -0.215 1.215 25 H -0.205 1.205 26 H -0.218 1.218 27 C 0.059 3.941 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.243 0.757 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.035 0.965 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.107 0.893 48 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -2.350 10.486 -3.108 11.186 hybrid contribution -0.792 -0.257 1.124 1.399 sum -3.142 10.229 -1.984 10.883 Atomic orbital electron populations 1.21731 0.94534 1.02648 0.99405 1.21469 0.96475 0.92762 0.99825 1.21388 0.98905 0.92021 0.86515 1.46046 1.52935 1.11395 1.25960 1.20187 0.80340 0.82139 0.86798 1.90670 1.38459 1.66421 1.47185 1.22075 1.02375 0.94513 0.94448 0.87222 1.22540 1.03542 0.97432 0.91556 1.23391 1.04964 0.92260 0.99113 1.21830 0.73042 0.84349 0.96338 1.93025 1.33549 1.94449 1.96769 1.93000 1.74798 1.59146 1.91321 1.23053 1.05857 0.96787 0.93095 1.21345 0.99965 0.96006 0.96023 1.22047 1.00971 0.95713 0.98703 1.20933 0.96420 0.94250 0.86729 1.43978 1.65411 1.05486 1.16206 1.19193 1.17882 1.14869 0.85851 0.91725 1.24987 0.97020 1.00704 0.96784 1.70052 1.27369 1.38466 1.18715 0.86369 0.81164 0.78396 0.81357 1.21483 1.20481 1.21798 1.20700 0.96265 0.83777 0.93311 0.90962 0.93704 0.94550 0.91812 0.92280 0.75677 0.88506 0.89486 0.88489 0.88136 0.86815 0.88493 0.92560 0.93399 0.93195 0.91962 0.96529 0.92932 0.93698 0.89343 0.96514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 7.80 37.16 0.29 -1.72 16 2 C -0.10 -1.71 0.53 -154.62 -0.08 -1.79 16 3 C 0.14 2.12 4.57 -4.04 -0.02 2.10 16 4 N -0.71 -10.46 4.96 -60.30 -0.30 -10.76 16 5 C 0.52 7.60 7.14 -10.99 -0.08 7.52 16 6 O -0.55 -9.76 15.44 5.55 0.09 -9.67 16 7 C -0.11 -1.27 3.25 -90.11 -0.29 -1.56 16 8 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 9 C -0.11 -1.24 6.31 -24.66 -0.16 -1.40 16 10 C -0.16 -1.57 6.40 -25.00 -0.16 -1.74 16 11 C 0.28 3.26 2.58 -25.61 -0.07 3.19 16 12 F -0.20 -2.66 17.04 2.25 0.04 -2.62 16 13 F -0.20 -2.46 17.04 2.25 0.04 -2.43 16 14 C -0.15 -1.72 5.87 -25.61 -0.15 -1.87 16 15 C -0.10 -1.48 4.71 -26.69 -0.13 -1.61 16 16 C -0.14 -2.17 5.74 -26.61 -0.15 -2.32 16 17 C 0.14 2.80 6.52 -3.71 -0.02 2.78 16 18 N -0.59 -13.40 2.44 -172.58 -0.42 -13.82 16 19 C -0.25 -6.26 9.58 -15.06 -0.14 -6.41 16 20 H 0.07 1.63 7.89 -52.49 -0.41 1.22 16 21 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 22 N -0.90 -23.74 11.19 55.49 0.62 -23.12 16 23 Si 0.90 20.12 29.59 -169.99 -5.03 15.09 16 24 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.19 3.90 3.69 -3.93 -0.01 3.88 16 28 H 0.07 1.29 5.97 -51.93 -0.31 0.98 16 29 H 0.04 0.70 6.86 -51.93 -0.36 0.35 16 30 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.41 5.87 6.21 -40.82 -0.25 5.61 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 36 H 0.10 0.92 8.11 -51.93 -0.42 0.49 16 37 H 0.10 0.84 8.12 -51.93 -0.42 0.42 16 38 H 0.11 1.52 6.75 -51.92 -0.35 1.17 16 39 H 0.10 0.98 8.02 -51.93 -0.42 0.56 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 1.01 6.33 -51.93 -0.33 0.68 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 46 H 0.25 6.47 8.31 -40.82 -0.34 6.14 16 47 H 0.09 2.00 4.94 -51.93 -0.26 1.74 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -28.54 373.52 -8.32 -36.86 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.72 Total: 5.78 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.26 Total: -0.94 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.10 Total: -47.70 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.08 Total: -5.05 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.54 -8.32 -36.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754728511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.844 kcal (2) G-P(sol) polarization free energy of solvation -28.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds