Wall clock time and date at job start Tue Mar 31 2020 15:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.49876 * 2 1 4 4 N 1.46507 * 109.47505 * 59.93347 * 3 2 1 5 5 C 1.34770 * 120.00431 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00086 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00379 * 180.02562 * 5 4 3 8 8 H 1.09004 * 110.43001 * 300.69747 * 7 5 4 9 9 C 1.54891 * 110.48792 * 63.23277 * 7 5 4 10 10 C 1.55034 * 102.68010 * 156.52177 * 9 7 5 11 11 C 1.54263 * 104.28238 * 322.23487 * 10 9 7 12 12 F 1.39906 * 110.03085 * 264.23539 * 11 10 9 13 13 F 1.39890 * 110.03409 * 142.80349 * 11 10 9 14 14 C 1.53877 * 106.59835 * 23.51953 * 11 10 9 15 15 C 1.53033 * 109.49748 * 239.93106 * 2 1 3 16 16 C 1.53044 * 109.54034 * 301.41486 * 15 2 1 17 17 C 1.53187 * 109.31375 * 298.63686 * 16 15 2 18 18 N 1.46926 * 108.77629 * 54.63309 * 17 16 15 19 19 C 1.36940 * 120.62975 * 126.36813 * 18 17 16 20 20 H 1.07998 * 119.99777 * 332.44347 * 19 18 17 21 21 C 1.38807 * 119.99789 * 152.44646 * 19 18 17 22 22 N 1.31625 * 120.00346 * 342.77062 * 21 19 18 23 23 Si 1.86805 * 120.00059 * 162.77168 * 21 19 18 24 24 H 1.48508 * 109.47035 * 270.00168 * 23 21 19 25 25 H 1.48505 * 109.46972 * 29.99708 * 23 21 19 26 26 H 1.48494 * 109.47363 * 149.99875 * 23 21 19 27 27 C 1.46930 * 118.73855 * 306.64256 * 18 17 16 28 28 H 1.09003 * 109.47562 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47578 * 300.06965 * 1 2 3 30 30 H 1.09010 * 109.46876 * 60.06757 * 1 2 3 31 31 H 1.09001 * 109.47301 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47611 * 299.93368 * 3 2 1 33 33 H 0.97004 * 119.99347 * 359.97438 * 4 3 2 34 34 H 1.08993 * 110.75480 * 274.94128 * 9 7 5 35 35 H 1.09003 * 110.75182 * 38.31365 * 9 7 5 36 36 H 1.09007 * 110.51760 * 203.48881 * 10 9 7 37 37 H 1.08999 * 110.48025 * 80.95804 * 10 9 7 38 38 H 1.09010 * 110.03052 * 240.71656 * 14 11 10 39 39 H 1.09001 * 110.07431 * 119.30861 * 14 11 10 40 40 H 1.09005 * 109.45815 * 181.39827 * 15 2 1 41 41 H 1.08993 * 109.46109 * 61.44117 * 15 2 1 42 42 H 1.09003 * 109.49377 * 178.68184 * 16 15 2 43 43 H 1.08997 * 109.49386 * 58.58698 * 16 15 2 44 44 H 1.09004 * 109.58464 * 294.84792 * 17 16 15 45 45 H 1.08998 * 109.58925 * 174.42372 * 17 16 15 46 46 H 0.97001 * 119.99803 * 179.97438 * 22 21 19 47 47 H 1.08997 * 109.58242 * 173.14315 * 27 18 17 48 48 H 1.08994 * 109.58811 * 293.56959 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 7 1.5514 2.1336 1.1954 5 6 1.8769 3.4239 1.4083 6 8 2.5753 4.0127 0.6105 7 6 1.3741 4.1350 2.6382 8 1 0.2843 4.1334 2.6597 9 6 1.9425 3.4726 3.9177 10 6 1.8582 4.6174 4.9597 11 6 2.2208 5.8864 4.1610 12 9 3.5803 6.1784 4.3164 13 9 1.4454 6.9656 4.5980 14 6 1.9130 5.5797 2.6849 15 6 2.0408 -0.7228 -1.2484 16 6 1.5030 -2.1555 -1.2665 17 6 2.0139 -2.9040 -0.0314 18 7 1.6514 -2.1385 1.1691 19 6 0.9629 -2.7318 2.1934 20 1 0.3083 -3.5667 1.9917 21 6 1.1063 -2.2599 3.4909 22 7 2.1283 -1.4912 3.8025 23 14 -0.1511 -2.7158 4.7950 24 1 -1.2369 -1.7027 4.8113 25 1 -0.7241 -4.0504 4.4850 26 1 0.5077 -2.7568 6.1251 27 6 2.0363 -0.7226 1.2471 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5149 0.8893 30 1 -0.3633 0.5128 -0.8907 31 1 3.1307 1.4417 0.0005 32 1 1.6786 1.9559 -0.8905 33 1 0.9925 1.6628 1.8333 34 1 1.3267 2.6258 4.2204 35 1 2.9771 3.1648 3.7663 36 1 2.5754 4.4552 5.7644 37 1 0.8476 4.6948 5.3605 38 1 2.8228 5.6583 2.0896 39 1 1.1597 6.2716 2.3082 40 1 3.1305 -0.7442 -1.2353 41 1 1.6989 -0.1953 -2.1388 42 1 1.8481 -2.6623 -2.1677 43 1 0.4132 -2.1351 -1.2546 44 1 3.0978 -3.0043 -0.0874 45 1 1.5553 -3.8919 0.0128 46 1 2.2283 -1.1612 4.7092 47 1 1.5925 -0.2717 2.1346 48 1 3.1221 -0.6414 1.2975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754728511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:14 Heat of formation + Delta-G solvation = -154.423978 kcal Electronic energy + Delta-G solvation = -30242.169333 eV Core-core repulsion = 25966.504801 eV Total energy + Delta-G solvation = -4275.664533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.96138 -48.04501 -41.27038 -39.97131 -37.66071 -36.29221 -34.87333 -32.98456 -31.61912 -30.42655 -29.33616 -27.91655 -27.23651 -26.65051 -24.00255 -23.31535 -22.18811 -21.89003 -20.97070 -19.55979 -18.90008 -18.47985 -18.22616 -17.56209 -17.14680 -16.77483 -16.69097 -16.21664 -15.70123 -15.48385 -15.36047 -15.24434 -15.08137 -14.88146 -14.74947 -14.40050 -14.36289 -14.20221 -13.77479 -13.75635 -13.23646 -13.05848 -12.98300 -12.93860 -12.78810 -12.69031 -12.55704 -12.41266 -12.23580 -12.12256 -11.95778 -11.82215 -11.71342 -11.68669 -11.39100 -11.20411 -10.95288 -10.80583 -10.46660 -10.02631 -8.58415 -7.79442 -5.24080 1.50428 1.54167 1.59072 1.60610 2.15500 2.56409 2.76078 2.94465 3.05198 3.32258 3.38479 3.63945 3.83843 3.92245 3.98699 4.05020 4.06215 4.07499 4.17028 4.25342 4.34466 4.38234 4.54471 4.59302 4.71218 4.76719 4.77762 4.82177 4.84935 4.95759 4.99430 5.01517 5.06839 5.08088 5.14363 5.19573 5.32143 5.36388 5.43431 5.50137 5.55500 5.67167 5.76306 5.82092 6.46394 6.54195 7.20409 7.23062 7.93031 8.46054 9.25935 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.003921 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.022744 B = 7139.698078 C = 8834.865036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.092 4.092 3 C 0.142 3.858 4 N -0.710 5.710 5 C 0.518 3.482 6 O -0.583 6.583 7 C -0.104 4.104 8 H 0.142 0.858 9 C -0.111 4.111 10 C -0.150 4.150 11 C 0.277 3.723 12 F -0.212 7.212 13 F -0.203 7.203 14 C -0.147 4.147 15 C -0.096 4.096 16 C -0.123 4.123 17 C 0.136 3.864 18 N -0.604 5.604 19 C -0.258 4.258 20 H 0.061 0.939 21 C -0.038 4.038 22 N -0.927 5.927 23 Si 0.955 3.045 24 H -0.278 1.278 25 H -0.279 1.279 26 H -0.300 1.300 27 C 0.198 3.802 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.409 0.591 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.049 0.951 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.005 0.995 45 H 0.050 0.950 46 H 0.250 0.750 47 H 0.071 0.929 48 H -0.022 1.022 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.958 10.516 -3.275 12.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.094 4.094 3 C 0.017 3.983 4 N -0.361 5.361 5 C 0.305 3.695 6 O -0.464 6.464 7 C -0.125 4.125 8 H 0.160 0.840 9 C -0.149 4.149 10 C -0.188 4.188 11 C 0.241 3.759 12 F -0.193 7.193 13 F -0.184 7.184 14 C -0.185 4.185 15 C -0.134 4.134 16 C -0.162 4.162 17 C 0.010 3.990 18 N -0.327 5.327 19 C -0.388 4.388 20 H 0.079 0.921 21 C -0.234 4.234 22 N -0.573 5.573 23 Si 0.784 3.216 24 H -0.204 1.204 25 H -0.204 1.204 26 H -0.227 1.227 27 C 0.072 3.928 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.246 0.754 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.143 0.857 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.023 0.977 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.089 0.911 48 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges -4.409 10.975 -3.680 12.387 hybrid contribution -0.078 -0.473 1.275 1.362 sum -4.486 10.502 -2.405 11.670 Atomic orbital electron populations 1.21646 0.93382 1.01868 1.00684 1.21274 0.97173 0.92797 0.98129 1.21264 0.97902 0.91590 0.87504 1.46048 1.52787 1.11540 1.25741 1.20736 0.79534 0.81860 0.87320 1.90657 1.39951 1.67092 1.48670 1.22111 1.04065 0.93755 0.92594 0.84018 1.22492 1.02331 0.98133 0.91950 1.23391 1.06492 0.90422 0.98516 1.22018 0.72313 0.84865 0.96736 1.92998 1.34813 1.94612 1.96845 1.92995 1.74707 1.59382 1.91331 1.23010 1.05351 0.97330 0.92812 1.21376 0.99613 0.95909 0.96460 1.21918 1.01002 0.95632 0.97651 1.21093 0.95856 0.94635 0.87393 1.44216 1.65373 1.06431 1.16650 1.19420 1.17838 1.14803 0.86759 0.92141 1.25575 0.98412 1.01123 0.98323 1.70187 1.28726 1.39597 1.18808 0.85465 0.79277 0.78247 0.78600 1.20420 1.20387 1.22698 1.20476 0.93781 0.83589 0.94967 0.92687 0.93723 0.91971 0.93573 0.90906 0.75398 0.87883 0.91707 0.88061 0.85749 0.89043 0.86838 0.93261 0.90433 0.90431 0.91647 0.97669 0.93156 0.94047 0.91102 1.00349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.54 7.80 71.98 0.56 -2.98 16 2 C -0.09 -2.96 0.53 -52.25 -0.03 -2.99 16 3 C 0.14 4.33 4.57 86.38 0.39 4.72 16 4 N -0.71 -20.43 4.96 -463.07 -2.30 -22.72 16 5 C 0.52 14.84 7.14 87.66 0.63 15.47 16 6 O -0.58 -20.71 15.44 -3.04 -0.05 -20.76 16 7 C -0.10 -2.19 3.25 -10.47 -0.03 -2.23 16 8 H 0.14 2.12 8.14 -2.38 -0.02 2.10 16 9 C -0.11 -2.34 6.31 31.94 0.20 -2.14 16 10 C -0.15 -2.71 6.40 31.72 0.20 -2.50 16 11 C 0.28 6.09 2.58 31.32 0.08 6.17 16 12 F -0.21 -5.69 17.04 44.97 0.77 -4.92 16 13 F -0.20 -4.60 17.04 44.97 0.77 -3.84 16 14 C -0.15 -3.21 5.87 31.32 0.18 -3.03 16 15 C -0.10 -2.79 4.71 30.62 0.14 -2.64 16 16 C -0.12 -3.70 5.74 30.67 0.18 -3.53 16 17 C 0.14 5.30 6.52 86.36 0.56 5.86 16 18 N -0.60 -27.76 2.44 -699.93 -1.71 -29.46 16 19 C -0.26 -13.09 9.58 84.03 0.81 -12.29 16 20 H 0.06 3.06 7.89 -2.91 -0.02 3.04 16 21 C -0.04 -1.95 4.91 84.86 0.42 -1.54 16 22 N -0.93 -49.72 11.19 21.65 0.24 -49.48 16 23 Si 0.95 41.25 29.59 68.60 2.03 43.28 16 24 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 27 C 0.20 8.45 3.69 86.22 0.32 8.77 16 28 H 0.05 1.85 5.97 -2.39 -0.01 1.84 16 29 H 0.04 1.32 6.86 -2.39 -0.02 1.30 16 30 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.41 11.50 6.21 -92.71 -0.58 10.93 16 34 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.06 1.65 8.05 -2.39 -0.02 1.63 16 36 H 0.10 1.77 8.11 -2.38 -0.02 1.75 16 37 H 0.12 1.68 8.12 -2.39 -0.02 1.66 16 38 H 0.09 2.46 6.75 -2.38 -0.02 2.45 16 39 H 0.11 2.08 8.02 -2.39 -0.02 2.06 16 40 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.06 1.96 6.33 -2.39 -0.02 1.94 16 44 H 0.01 0.22 8.14 -2.38 -0.02 0.20 16 45 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 46 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16 47 H 0.07 3.27 4.94 -2.39 -0.01 3.25 16 48 H -0.02 -1.07 8.14 -2.39 -0.02 -1.08 16 Total: -1.00 -62.40 373.52 4.75 -57.65 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.39 Total: 25.11 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 4.61 Total: 5.14 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -3.76 Total: -101.67 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.05 Total: -20.76 kcal Atomic # 9 Polarization: -10.29 SS G_CDS: 1.53 Total: -8.76 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -62.40 4.75 -57.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754728511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.775 kcal (2) G-P(sol) polarization free energy of solvation -62.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds