Wall clock time and date at job start Tue Mar 31 2020 16:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46903 * 109.47267 * 301.94247 * 3 2 1 5 5 C 1.46898 * 110.99845 * 73.85433 * 4 3 2 6 6 C 1.47203 * 109.47591 * 293.95641 * 5 4 3 7 7 C 3.01010 * 74.42764 * 340.89794 * 2 1 3 8 8 C 3.89820 * 54.81040 * 343.28315 * 2 1 3 9 9 C 1.38575 * 111.00241 * 197.81305 * 4 3 2 10 10 N 1.31222 * 126.47139 * 304.48514 * 9 4 3 11 11 N 1.28531 * 109.86022 * 180.02562 * 10 9 4 12 12 C 1.30293 * 110.05372 * 359.72213 * 11 10 9 13 13 C 1.50701 * 126.34786 * 180.31305 * 12 11 10 14 14 C 1.52995 * 109.46987 * 270.14981 * 13 12 11 15 15 C 1.50700 * 109.47364 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99515 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00362 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00062 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47273 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46952 * 119.99970 * 19 17 15 22 22 H 1.48497 * 109.47048 * 239.99696 * 19 17 15 23 23 N 1.36449 * 126.47676 * 124.53346 * 9 4 3 24 24 C 1.46507 * 127.13644 * 359.96184 * 23 9 4 25 25 C 1.52998 * 109.47005 * 84.36577 * 24 23 9 26 26 O 1.42894 * 109.47183 * 179.97438 * 25 24 23 27 27 C 1.42896 * 114.00640 * 179.97438 * 26 25 24 28 28 H 4.40889 * 5.52217 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47067 * 181.95178 * 3 2 1 30 30 H 1.08991 * 109.47464 * 61.94260 * 3 2 1 31 31 H 1.09000 * 109.46973 * 53.95699 * 5 4 3 32 32 H 1.09000 * 109.47509 * 173.95433 * 5 4 3 33 33 H 1.08994 * 109.47114 * 11.87987 * 8 7 6 34 34 H 1.09000 * 109.47010 * 131.88342 * 8 7 6 35 35 H 1.09000 * 109.46864 * 251.87704 * 8 7 6 36 36 H 1.09000 * 109.47125 * 30.15576 * 13 12 11 37 37 H 1.09005 * 109.47076 * 150.15396 * 13 12 11 38 38 H 1.09000 * 109.47674 * 300.00259 * 14 13 12 39 39 H 1.09005 * 109.46874 * 60.00291 * 14 13 12 40 40 H 0.97005 * 120.00420 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.46704 * 324.36789 * 24 23 9 42 42 H 1.08995 * 109.46998 * 204.36666 * 24 23 9 43 43 H 1.09006 * 109.46978 * 60.00058 * 25 24 23 44 44 H 1.08999 * 109.47064 * 300.00339 * 25 24 23 45 45 H 1.08994 * 109.47582 * 179.97438 * 27 26 25 46 46 H 1.08997 * 109.47040 * 300.00895 * 27 26 25 47 47 H 1.09004 * 109.46821 * 59.99752 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1360 -0.7319 1.1753 5 6 2.9526 -2.1797 1.0073 6 6 1.5144 -2.4916 0.9748 7 6 0.3659 -2.7399 0.9489 8 6 -1.0725 -3.0512 0.9164 9 6 4.4627 -0.4260 1.4336 10 7 5.4667 -0.5397 0.5964 11 7 6.5563 -0.1687 1.1683 12 6 6.3133 0.2061 2.3922 13 6 7.3238 0.7147 3.3879 14 6 7.8958 -0.4623 4.1805 15 6 8.9058 0.0463 5.1766 16 1 9.1187 1.1034 5.2379 17 6 9.5588 -0.8378 6.0090 18 7 9.3006 -2.1251 5.9333 19 14 10.8112 -0.2074 7.2432 20 1 10.9190 1.2693 7.1289 21 1 10.3764 -0.5665 8.6170 22 1 12.1334 -0.8237 6.9655 23 7 4.9719 0.0495 2.6068 24 6 4.2336 0.3387 3.8388 25 6 4.0783 -0.9467 4.6539 26 8 3.3587 -0.6646 5.8558 27 6 3.1573 -1.8043 6.6939 28 1 -1.0499 0.0000 0.0003 29 1 3.0089 1.0279 0.0350 30 1 3.0096 -0.4825 -0.9068 31 1 3.4148 -2.4985 0.0731 32 1 3.4194 -2.7042 1.8410 33 1 -1.6356 -2.1441 0.6969 34 1 -1.2659 -3.7950 0.1434 35 1 -1.3810 -3.4450 1.8848 36 1 8.1302 1.2233 2.8597 37 1 6.8405 1.4126 4.0718 38 1 7.0893 -0.9709 4.7088 39 1 8.3790 -1.1602 3.4967 40 1 9.7597 -2.7472 6.5191 41 1 3.2481 0.7313 3.5880 42 1 4.7804 1.0770 4.4252 43 1 5.0638 -1.3393 4.9045 44 1 3.5315 -1.6850 4.0674 45 1 2.6046 -1.5069 7.5850 46 1 2.5909 -2.5599 6.1497 47 1 4.1236 -2.2153 6.9865 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355375708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:18 Heat of formation + Delta-G solvation = 147.946345 kcal Electronic energy + Delta-G solvation = -28215.081039 eV Core-core repulsion = 24403.217454 eV Total energy + Delta-G solvation = -3811.863585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.79666 -38.38557 -37.95841 -35.12991 -34.34501 -33.84774 -33.10318 -31.78932 -30.03862 -29.64835 -28.61577 -27.16332 -26.34238 -25.48534 -24.79245 -23.41384 -21.99517 -20.77633 -19.93869 -18.45280 -17.69549 -16.93119 -16.73899 -16.41709 -16.03137 -15.89531 -15.55468 -15.24869 -14.88733 -14.62694 -14.37757 -14.03998 -13.82917 -13.75835 -13.52757 -13.48153 -13.03428 -13.01214 -12.75057 -12.35564 -12.27620 -11.61835 -11.48812 -11.27611 -11.23749 -11.03989 -10.96417 -10.74508 -10.67194 -10.38276 -10.10316 -10.01142 -9.94062 -9.83386 -9.64625 -9.56791 -9.24869 -9.02055 -8.54829 -8.44634 -6.09549 -4.13224 1.79136 1.94431 2.56429 2.60504 2.77025 2.88826 3.14388 3.26787 3.34941 3.38465 3.61645 3.99835 4.12754 4.26567 4.38564 4.69850 4.80500 4.94641 4.99741 5.05251 5.19372 5.23548 5.26879 5.28231 5.33871 5.34034 5.37760 5.39956 5.44650 5.45417 5.54603 5.62766 5.68418 5.70385 5.77550 5.79604 6.20109 6.29040 6.34995 6.37260 6.57667 6.81830 7.05911 7.28668 7.50264 7.50717 7.55015 7.62465 7.87503 8.24839 8.92505 8.98910 9.51704 11.01558 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.003118 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.238888 B = 8977.552020 C = 9984.657768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.171 4.171 3 C 0.179 3.821 4 N -0.454 5.454 5 C 0.182 3.818 6 C -0.179 4.179 7 C -0.167 4.167 8 C -0.038 4.038 9 C 0.316 3.684 10 N -0.303 5.303 11 N -0.293 5.293 12 C 0.226 3.774 13 C -0.035 4.035 14 C 0.032 3.968 15 C -0.522 4.522 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.283 1.283 23 N -0.459 5.459 24 C 0.119 3.881 25 C 0.049 3.951 26 O -0.387 6.387 27 C 0.035 3.965 28 H 0.214 0.786 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.015 0.985 39 H 0.026 0.974 40 H 0.261 0.739 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.087 0.913 46 H 0.039 0.961 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.802 0.896 -6.800 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.171 4.171 3 C 0.053 3.947 4 N -0.179 5.179 5 C 0.057 3.943 6 C -0.180 4.180 7 C -0.169 4.169 8 C -0.093 4.093 9 C -0.040 4.040 10 N -0.147 5.147 11 N -0.133 5.133 12 C -0.041 4.041 13 C -0.075 4.075 14 C -0.006 4.006 15 C -0.561 4.561 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.209 1.209 23 N -0.153 5.153 24 C -0.005 4.005 25 C -0.028 4.028 26 O -0.305 6.305 27 C -0.062 4.062 28 H 0.231 0.769 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.033 0.967 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.057 0.943 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.313 0.765 -7.522 21.674 hybrid contribution 0.196 -0.171 1.338 1.363 sum -20.117 0.594 -6.184 21.054 Atomic orbital electron populations 1.24649 0.95598 1.00886 0.99850 1.22489 0.93748 1.00278 1.00624 1.18936 0.85269 0.99592 0.90921 1.58266 1.11290 1.08007 1.40331 1.18953 0.87048 0.85282 1.03066 1.21655 0.93417 1.01616 1.01265 1.22233 0.93588 0.99359 1.01680 1.18854 0.85568 1.02049 1.02865 1.21841 0.91064 1.05475 0.85619 1.74548 0.95222 1.19184 1.25772 1.74108 1.17899 1.16577 1.04691 1.25753 0.82152 1.00087 0.96065 1.20546 0.93083 1.00844 0.93049 1.19104 0.95757 0.91586 0.94162 1.21157 1.22599 0.93797 1.18518 0.92178 1.24995 0.96977 0.94814 0.97415 1.69971 1.42553 1.01696 1.38876 0.86506 0.81255 0.79130 0.80956 1.19584 1.21040 1.20920 1.46195 1.08647 1.49007 1.11434 1.21497 0.98131 0.98124 0.82721 1.22760 0.97454 0.96379 0.86248 1.87740 1.76294 1.34041 1.32401 1.22753 1.00904 0.88466 0.94070 0.76870 0.88195 0.90233 0.90370 0.88360 0.90211 0.90373 0.90329 0.88929 0.90885 0.96714 0.95571 0.92932 0.87945 0.87382 0.91107 0.93006 0.89469 0.94252 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 16.82 29.55 0.50 -1.37 16 2 C -0.17 -1.97 11.13 -37.12 -0.41 -2.39 16 3 C 0.18 2.15 5.33 -6.61 -0.04 2.12 16 4 N -0.45 -6.13 4.52 -181.18 -0.82 -6.95 16 5 C 0.18 2.33 5.38 -6.61 -0.04 2.29 16 6 C -0.18 -2.21 11.18 -37.11 -0.41 -2.63 16 7 C -0.17 -1.82 12.03 -37.11 -0.45 -2.27 16 8 C -0.04 -0.25 10.31 34.37 0.35 0.10 16 9 C 0.32 5.06 6.34 -318.88 -2.02 3.04 16 10 N -0.30 -5.60 12.12 30.31 0.37 -5.24 16 11 N -0.29 -5.99 12.18 32.99 0.40 -5.58 16 12 C 0.23 4.28 7.32 -154.01 -1.13 3.15 16 13 C -0.04 -0.69 5.51 -27.88 -0.15 -0.85 16 14 C 0.03 0.78 4.95 -27.89 -0.14 0.65 16 15 C -0.52 -13.93 9.11 -34.44 -0.31 -14.25 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 19 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 N -0.46 -7.52 2.81 -114.08 -0.32 -7.85 16 24 C 0.12 1.69 6.44 -4.04 -0.03 1.66 16 25 C 0.05 0.74 6.26 37.16 0.23 0.97 16 26 O -0.39 -5.70 10.70 -35.23 -0.38 -6.08 16 27 C 0.03 0.42 11.01 101.05 1.11 1.53 16 28 H 0.21 1.32 7.59 -54.10 -0.41 0.91 16 29 H 0.10 1.19 7.94 -51.93 -0.41 0.77 16 30 H 0.08 0.92 7.91 -51.93 -0.41 0.51 16 31 H 0.08 0.97 7.97 -51.93 -0.41 0.56 16 32 H 0.10 1.29 8.05 -51.93 -0.42 0.87 16 33 H 0.08 0.41 7.47 -51.93 -0.39 0.03 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 37 H 0.07 1.29 7.18 -51.93 -0.37 0.91 16 38 H 0.01 0.37 6.89 -51.93 -0.36 0.02 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.11 1.49 7.09 -51.93 -0.37 1.12 16 43 H 0.07 1.24 6.89 -51.93 -0.36 0.89 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 405.36 15.07 6.11 6.11 Total: -1.00 -32.40 405.36 -9.21 -41.60 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.26 Total: -0.11 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -3.03 Total: -6.68 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.37 Total: -50.76 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.38 Total: -6.08 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.40 -9.21 -41.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355375708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.547 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds