Wall clock time and date at job start Tue Mar 31 2020 15:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.46808 * 2 1 4 4 H 1.08997 * 109.47508 * 304.99901 * 3 2 1 5 5 C 1.53001 * 109.46852 * 65.00400 * 3 2 1 6 6 N 1.46496 * 109.46786 * 184.99907 * 3 2 1 7 7 N 1.39988 * 125.91400 * 300.11412 * 6 3 2 8 8 C 1.30266 * 109.75167 * 180.30489 * 7 6 3 9 9 C 1.41081 * 108.58352 * 359.76071 * 8 7 6 10 10 C 1.37075 * 125.91017 * 120.00505 * 6 3 2 11 11 N 1.32546 * 133.43532 * 359.97438 * 10 6 3 12 12 C 1.31522 * 121.99714 * 179.68580 * 11 10 6 13 13 C 1.50702 * 119.15579 * 179.97438 * 12 11 10 14 14 C 1.38578 * 121.68247 * 359.97438 * 12 11 10 15 15 C 1.39467 * 119.35526 * 359.97438 * 14 12 11 16 16 C 1.47661 * 121.09753 * 180.02562 * 15 14 12 17 17 O 1.21619 * 120.00038 * 233.82750 * 16 15 14 18 18 N 1.34775 * 120.00323 * 53.83288 * 16 15 14 19 19 C 1.36716 * 120.00402 * 184.45885 * 18 16 15 20 20 H 1.07994 * 120.00277 * 321.70065 * 19 18 16 21 21 C 1.39147 * 120.00303 * 141.69692 * 19 18 16 22 22 N 1.31297 * 120.00500 * 157.35895 * 21 19 18 23 23 Si 1.86808 * 119.99990 * 337.36521 * 21 19 18 24 24 H 1.48503 * 109.47136 * 91.86098 * 23 21 19 25 25 H 1.48499 * 109.47213 * 211.86269 * 23 21 19 26 26 H 1.48502 * 109.46899 * 331.86404 * 23 21 19 27 27 C 1.46498 * 119.99627 * 4.45423 * 18 16 15 28 28 C 1.52998 * 109.47094 * 84.67989 * 27 18 16 29 29 H 1.08996 * 109.46725 * 299.99534 * 1 2 3 30 30 H 1.08997 * 109.46889 * 59.99819 * 1 2 3 31 31 H 1.09001 * 109.46600 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46871 * 240.00312 * 2 1 3 33 33 H 1.08997 * 109.47197 * 120.00633 * 2 1 3 34 34 H 1.09005 * 109.46813 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47418 * 299.99773 * 5 3 2 36 36 H 1.09001 * 109.47036 * 60.00083 * 5 3 2 37 37 H 1.07996 * 125.71382 * 179.74113 * 8 7 6 38 38 H 1.09001 * 109.46629 * 89.99612 * 13 12 11 39 39 H 1.08996 * 109.47186 * 209.99694 * 13 12 11 40 40 H 1.08999 * 109.46999 * 330.00088 * 13 12 11 41 41 H 1.07997 * 120.32069 * 180.02562 * 14 12 11 42 42 H 0.97000 * 120.00421 * 180.02562 * 22 21 19 43 43 H 1.09005 * 109.47206 * 204.67676 * 27 18 16 44 44 H 1.09002 * 109.47614 * 324.68249 * 27 18 16 45 45 H 1.09001 * 109.47259 * 179.97438 * 28 27 18 46 46 H 1.08996 * 109.47073 * 300.00113 * 28 27 18 47 47 H 1.09001 * 109.47172 * 59.99865 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 7 3.5000 1.4443 -0.1204 7 7 4.3983 0.8482 0.7727 8 6 5.6199 1.0462 0.3661 9 6 5.5800 1.7878 -0.8334 10 6 4.2229 2.0281 -1.1281 11 7 3.8868 2.7114 -2.2130 12 6 4.7882 3.1857 -3.0450 13 6 4.3343 3.9533 -4.2598 14 6 6.1447 2.9975 -2.8331 15 6 6.5693 2.2882 -1.7099 16 6 8.0051 2.0655 -1.4463 17 8 8.4224 0.9376 -1.2654 18 7 8.8531 3.1122 -1.4059 19 6 10.1949 2.8995 -1.2529 20 1 10.5463 2.1188 -0.5946 21 6 11.1080 3.6888 -1.9453 22 7 12.3376 3.8129 -1.5019 23 14 10.5844 4.5721 -3.5059 24 1 10.1020 5.9347 -3.1653 25 1 11.7427 4.6736 -4.4296 26 1 9.4923 3.8102 -4.1632 27 6 8.3371 4.4780 -1.5262 28 6 7.8811 4.9737 -0.1525 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.9990 3.1541 1.3076 35 1 0.5490 2.1252 1.3971 36 1 2.0700 1.5874 2.1492 37 1 6.5138 0.7008 0.8641 38 1 4.2619 5.0128 -4.0139 39 1 5.0543 3.8159 -5.0664 40 1 3.3582 3.5866 -4.5775 41 1 6.8661 3.3971 -3.5305 42 1 12.9740 4.3635 -1.9844 43 1 9.1229 5.1313 -1.9057 44 1 7.4922 4.4880 -2.2148 45 1 7.4975 5.9901 -0.2419 46 1 7.0953 4.3206 0.2270 47 1 8.7259 4.9639 0.5362 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127975157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:04 Heat of formation + Delta-G solvation = 76.663216 kcal Electronic energy + Delta-G solvation = -29173.971830 eV Core-core repulsion = 25359.017176 eV Total energy + Delta-G solvation = -3814.954654 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.65839 -39.18331 -38.02191 -36.43696 -35.29072 -33.01497 -32.20139 -31.77983 -30.88930 -29.82229 -28.86851 -27.41109 -25.68970 -24.96433 -23.48964 -22.71756 -22.15318 -22.11088 -20.21551 -18.71894 -17.62814 -17.04233 -16.88851 -16.30792 -15.86359 -15.49585 -15.23718 -15.00591 -14.48041 -14.14119 -13.85921 -13.70302 -13.58173 -13.45894 -13.32868 -13.01043 -12.66776 -12.59971 -12.48829 -12.39430 -12.34901 -12.07286 -11.98627 -11.87205 -11.69755 -11.57002 -11.29187 -11.09338 -11.04798 -10.81869 -10.66273 -10.31418 -10.03526 -9.95372 -9.64680 -9.15129 -8.67104 -8.57617 -8.14576 -7.84181 -6.51129 -4.06366 0.73099 1.36517 2.18780 2.63771 2.95322 3.14173 3.17949 3.48480 3.89377 4.05509 4.09162 4.14561 4.37282 4.64062 4.68897 4.74795 4.89473 4.96075 5.00967 5.03723 5.12451 5.18401 5.25619 5.44409 5.44854 5.51436 5.53736 5.55377 5.63285 5.68479 5.70877 5.74361 5.76518 5.84157 5.91281 5.96034 6.01327 6.03675 6.21313 6.27121 6.38968 6.42168 6.65882 6.70991 6.98398 7.42956 7.58619 8.02760 8.16945 8.37642 8.81941 9.18790 9.61505 10.60057 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019373 B = 0.003671 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.983035 B = 7626.056381 C = 8273.441122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.172 3.828 4 H 0.104 0.896 5 C -0.162 4.162 6 N -0.389 5.389 7 N -0.246 5.246 8 C 0.099 3.901 9 C -0.200 4.200 10 C 0.317 3.683 11 N -0.509 5.509 12 C 0.195 3.805 13 C -0.103 4.103 14 C -0.201 4.201 15 C 0.039 3.961 16 C 0.493 3.507 17 O -0.550 6.550 18 N -0.444 5.444 19 C -0.320 4.320 20 H 0.109 0.891 21 C 0.065 3.935 22 N -0.853 5.853 23 Si 0.871 3.129 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.261 1.261 27 C 0.071 3.929 28 C -0.159 4.159 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.197 0.803 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.144 0.856 42 H 0.276 0.724 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.048 0.952 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.791 1.989 -0.882 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.171 4.171 3 C 0.071 3.929 4 H 0.122 0.878 5 C -0.219 4.219 6 N -0.180 5.180 7 N -0.059 5.059 8 C -0.097 4.097 9 C -0.210 4.210 10 C 0.077 3.923 11 N -0.225 5.225 12 C 0.047 3.953 13 C -0.161 4.161 14 C -0.223 4.223 15 C 0.025 3.975 16 C 0.281 3.719 17 O -0.431 6.431 18 N -0.164 5.164 19 C -0.447 4.447 20 H 0.126 0.874 21 C -0.142 4.142 22 N -0.488 5.488 23 Si 0.698 3.302 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.185 1.185 27 C -0.052 4.052 28 C -0.217 4.217 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.214 0.786 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.162 0.838 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.166 1.067 0.049 22.191 hybrid contribution 1.345 0.799 -1.280 2.021 sum -20.821 1.866 -1.232 20.941 Atomic orbital electron populations 1.21791 0.94559 1.02252 1.02142 1.21882 0.96296 0.95411 1.03497 1.21269 0.73849 0.97662 1.00136 0.87800 1.22186 1.01828 1.00979 0.96948 1.48564 1.05504 1.46418 1.17518 1.76812 0.99257 1.16284 1.13581 1.23885 0.95762 0.96138 0.93873 1.19349 0.93281 1.08497 0.99919 1.18915 0.88500 0.94734 0.90166 1.66217 1.38865 1.14126 1.03333 1.21000 0.88421 0.92341 0.93543 1.20771 1.02733 0.99443 0.93122 1.21903 0.96581 1.03893 0.99929 1.20349 0.94796 0.90331 0.92038 1.17982 0.84176 0.85765 0.83990 1.90698 1.77387 1.22316 1.52730 1.43574 1.06906 1.02876 1.62996 1.19018 0.77838 1.20957 1.26846 0.87389 1.25389 0.94956 0.96524 0.97340 1.69706 1.05048 1.36546 1.37499 0.87070 0.79181 0.79599 0.84361 1.19791 1.21072 1.18532 1.22159 0.99386 0.85844 0.97829 1.22067 1.01566 0.99880 0.98193 0.92108 0.92449 0.92156 0.91563 0.90577 0.92226 0.90651 0.91187 0.78616 0.89926 0.90137 0.90323 0.83823 0.91321 0.90325 0.91146 0.92645 0.93292 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 37.16 0.36 -0.72 16 2 C -0.13 -1.34 5.66 -26.72 -0.15 -1.49 16 3 C 0.17 1.98 3.17 -67.93 -0.22 1.76 16 4 H 0.10 1.16 8.07 -51.93 -0.42 0.74 16 5 C -0.16 -1.58 9.21 37.16 0.34 -1.23 16 6 N -0.39 -5.94 3.33 -53.92 -0.18 -6.12 16 7 N -0.25 -4.01 12.29 30.79 0.38 -3.64 16 8 C 0.10 1.74 11.90 -17.14 -0.20 1.53 16 9 C -0.20 -3.72 6.04 -106.62 -0.64 -4.36 16 10 C 0.32 5.40 7.96 -156.06 -1.24 4.16 16 11 N -0.51 -8.06 10.25 -8.61 -0.09 -8.15 16 12 C 0.20 2.84 6.77 -82.60 -0.56 2.28 16 13 C -0.10 -1.03 10.14 36.01 0.37 -0.67 16 14 C -0.20 -3.34 7.35 -39.00 -0.29 -3.62 16 15 C 0.04 0.77 4.86 -104.42 -0.51 0.26 16 16 C 0.49 11.57 7.04 -12.41 -0.09 11.48 16 17 O -0.55 -14.77 16.95 5.26 0.09 -14.68 16 18 N -0.44 -10.50 2.16 -115.96 -0.25 -10.76 16 19 C -0.32 -8.75 9.35 -15.04 -0.14 -8.89 16 20 H 0.11 3.32 7.88 -52.49 -0.41 2.91 16 21 C 0.07 1.74 5.26 -17.44 -0.09 1.65 16 22 N -0.85 -23.75 13.95 55.51 0.77 -22.98 16 23 Si 0.87 19.45 25.25 -169.99 -4.29 15.16 16 24 H -0.27 -5.58 6.53 56.52 0.37 -5.21 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 26 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 27 C 0.07 1.40 4.51 -4.04 -0.02 1.38 16 28 C -0.16 -2.79 10.20 37.16 0.38 -2.41 16 29 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.54 6.57 -51.93 -0.34 0.20 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.20 3.27 8.06 -52.49 -0.42 2.85 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.14 2.26 7.21 -52.49 -0.38 1.88 16 42 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.08 1.62 3.58 -51.93 -0.19 1.43 16 44 H 0.07 1.22 4.40 -51.93 -0.23 1.00 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.05 0.86 7.95 -51.93 -0.41 0.44 16 47 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -31.76 382.08 -7.47 -39.23 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -6.96 Total: 5.06 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -2.70 Total: 1.12 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.63 Total: -51.63 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.09 Total: -14.68 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.29 Total: 15.16 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.76 -7.47 -39.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127975157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.889 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds