Wall clock time and date at job start Tue Mar 31 2020 15:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.46808 * 2 1 4 4 H 1.08997 * 109.47508 * 304.99901 * 3 2 1 5 5 C 1.53001 * 109.46852 * 65.00400 * 3 2 1 6 6 N 1.46496 * 109.46786 * 184.99907 * 3 2 1 7 7 N 1.39988 * 125.91400 * 300.11412 * 6 3 2 8 8 C 1.30266 * 109.75167 * 180.30489 * 7 6 3 9 9 C 1.41081 * 108.58352 * 359.76071 * 8 7 6 10 10 C 1.37075 * 125.91017 * 120.00505 * 6 3 2 11 11 N 1.32546 * 133.43532 * 359.97438 * 10 6 3 12 12 C 1.31522 * 121.99714 * 179.68580 * 11 10 6 13 13 C 1.50702 * 119.15579 * 179.97438 * 12 11 10 14 14 C 1.38578 * 121.68247 * 359.97438 * 12 11 10 15 15 C 1.39467 * 119.35526 * 359.97438 * 14 12 11 16 16 C 1.47661 * 121.09753 * 180.02562 * 15 14 12 17 17 O 1.21619 * 120.00038 * 233.82750 * 16 15 14 18 18 N 1.34775 * 120.00323 * 53.83288 * 16 15 14 19 19 C 1.36716 * 120.00402 * 184.45885 * 18 16 15 20 20 H 1.07994 * 120.00277 * 321.70065 * 19 18 16 21 21 C 1.39147 * 120.00303 * 141.69692 * 19 18 16 22 22 N 1.31297 * 120.00500 * 157.35895 * 21 19 18 23 23 Si 1.86808 * 119.99990 * 337.36521 * 21 19 18 24 24 H 1.48503 * 109.47136 * 91.86098 * 23 21 19 25 25 H 1.48499 * 109.47213 * 211.86269 * 23 21 19 26 26 H 1.48502 * 109.46899 * 331.86404 * 23 21 19 27 27 C 1.46498 * 119.99627 * 4.45423 * 18 16 15 28 28 C 1.52998 * 109.47094 * 84.67989 * 27 18 16 29 29 H 1.08996 * 109.46725 * 299.99534 * 1 2 3 30 30 H 1.08997 * 109.46889 * 59.99819 * 1 2 3 31 31 H 1.09001 * 109.46600 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46871 * 240.00312 * 2 1 3 33 33 H 1.08997 * 109.47197 * 120.00633 * 2 1 3 34 34 H 1.09005 * 109.46813 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47418 * 299.99773 * 5 3 2 36 36 H 1.09001 * 109.47036 * 60.00083 * 5 3 2 37 37 H 1.07996 * 125.71382 * 179.74113 * 8 7 6 38 38 H 1.09001 * 109.46629 * 89.99612 * 13 12 11 39 39 H 1.08996 * 109.47186 * 209.99694 * 13 12 11 40 40 H 1.08999 * 109.46999 * 330.00088 * 13 12 11 41 41 H 1.07997 * 120.32069 * 180.02562 * 14 12 11 42 42 H 0.97000 * 120.00421 * 180.02562 * 22 21 19 43 43 H 1.09005 * 109.47206 * 204.67676 * 27 18 16 44 44 H 1.09002 * 109.47614 * 324.68249 * 27 18 16 45 45 H 1.09001 * 109.47259 * 179.97438 * 28 27 18 46 46 H 1.08996 * 109.47073 * 300.00113 * 28 27 18 47 47 H 1.09001 * 109.47172 * 59.99865 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 7 3.5000 1.4443 -0.1204 7 7 4.3983 0.8482 0.7727 8 6 5.6199 1.0462 0.3661 9 6 5.5800 1.7878 -0.8334 10 6 4.2229 2.0281 -1.1281 11 7 3.8868 2.7114 -2.2130 12 6 4.7882 3.1857 -3.0450 13 6 4.3343 3.9533 -4.2598 14 6 6.1447 2.9975 -2.8331 15 6 6.5693 2.2882 -1.7099 16 6 8.0051 2.0655 -1.4463 17 8 8.4224 0.9376 -1.2654 18 7 8.8531 3.1122 -1.4059 19 6 10.1949 2.8995 -1.2529 20 1 10.5463 2.1188 -0.5946 21 6 11.1080 3.6888 -1.9453 22 7 12.3376 3.8129 -1.5019 23 14 10.5844 4.5721 -3.5059 24 1 10.1020 5.9347 -3.1653 25 1 11.7427 4.6736 -4.4296 26 1 9.4923 3.8102 -4.1632 27 6 8.3371 4.4780 -1.5262 28 6 7.8811 4.9737 -0.1525 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.9990 3.1541 1.3076 35 1 0.5490 2.1252 1.3971 36 1 2.0700 1.5874 2.1492 37 1 6.5138 0.7008 0.8641 38 1 4.2619 5.0128 -4.0139 39 1 5.0543 3.8159 -5.0664 40 1 3.3582 3.5866 -4.5775 41 1 6.8661 3.3971 -3.5305 42 1 12.9740 4.3635 -1.9844 43 1 9.1229 5.1313 -1.9057 44 1 7.4922 4.4880 -2.2148 45 1 7.4975 5.9901 -0.2419 46 1 7.0953 4.3206 0.2270 47 1 8.7259 4.9639 0.5362 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127975157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:03 Heat of formation + Delta-G solvation = 57.507359 kcal Electronic energy + Delta-G solvation = -29174.802491 eV Core-core repulsion = 25359.017176 eV Total energy + Delta-G solvation = -3815.785314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.95558 -40.83717 -39.37139 -37.42537 -37.11972 -34.65881 -33.84322 -32.90549 -31.95841 -31.47602 -29.79254 -28.53033 -27.50169 -25.88545 -25.00353 -24.24324 -23.43938 -23.16687 -21.53765 -20.09600 -18.98177 -18.90018 -18.25694 -17.82288 -17.61738 -16.75855 -16.38565 -16.07718 -15.91357 -15.50400 -15.33595 -15.11614 -14.88600 -14.72266 -14.44927 -14.37610 -14.21326 -14.05318 -13.75486 -13.47010 -13.20374 -13.15147 -13.01918 -12.80435 -12.79927 -12.71817 -12.67314 -12.60463 -12.28873 -12.04662 -11.95061 -11.69509 -11.66228 -11.43680 -11.21083 -10.91716 -10.35914 -9.87591 -9.82113 -9.36860 -8.55493 -6.18669 -0.61616 0.06342 1.03234 1.19355 1.26999 1.34791 1.46234 1.79609 2.16823 2.41113 2.59979 2.86560 2.96967 3.21333 3.54128 3.66029 3.67185 3.80717 3.86482 3.99632 4.03782 4.14813 4.30490 4.30891 4.34770 4.38861 4.43274 4.46960 4.57576 4.68788 4.81629 4.83176 4.87830 4.88202 4.88856 4.96696 5.01396 5.03165 5.06652 5.17480 5.24753 5.30165 5.35764 5.46492 5.49674 5.84415 6.00625 6.28770 6.45474 6.77681 6.82504 7.17309 7.70021 8.60691 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019373 B = 0.003671 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.983035 B = 7626.056381 C = 8273.441122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.161 3.839 4 H 0.114 0.886 5 C -0.155 4.155 6 N -0.381 5.381 7 N -0.243 5.243 8 C 0.078 3.922 9 C -0.223 4.223 10 C 0.309 3.691 11 N -0.502 5.502 12 C 0.207 3.793 13 C -0.101 4.101 14 C -0.194 4.194 15 C 0.017 3.983 16 C 0.494 3.506 17 O -0.601 6.601 18 N -0.450 5.450 19 C -0.342 4.342 20 H 0.047 0.953 21 C 0.020 3.980 22 N -0.899 5.899 23 Si 0.938 3.062 24 H -0.231 1.231 25 H -0.284 1.284 26 H -0.249 1.249 27 C 0.066 3.934 28 C -0.152 4.152 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.189 0.811 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.159 0.841 42 H 0.283 0.717 43 H 0.076 0.924 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.043 0.957 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.887 4.805 -3.399 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.062 3.938 4 H 0.132 0.868 5 C -0.212 4.212 6 N -0.172 5.172 7 N -0.057 5.057 8 C -0.117 4.117 9 C -0.233 4.233 10 C 0.069 3.931 11 N -0.219 5.219 12 C 0.057 3.943 13 C -0.158 4.158 14 C -0.217 4.217 15 C 0.003 3.997 16 C 0.283 3.717 17 O -0.486 6.486 18 N -0.169 5.169 19 C -0.470 4.470 20 H 0.065 0.935 21 C -0.184 4.184 22 N -0.535 5.535 23 Si 0.759 3.241 24 H -0.155 1.155 25 H -0.211 1.211 26 H -0.172 1.172 27 C -0.055 4.055 28 C -0.210 4.210 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.206 0.794 38 H 0.125 0.875 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.177 0.823 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.114 0.886 46 H 0.062 0.938 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -26.297 3.903 -2.433 26.696 hybrid contribution 2.549 -0.154 -0.433 2.590 sum -23.748 3.749 -2.866 24.212 Atomic orbital electron populations 1.21769 0.91877 1.03157 1.03285 1.21838 0.98488 0.94072 1.02147 1.21718 0.71622 0.98940 1.01541 0.86799 1.22160 1.03820 0.99910 0.95326 1.48988 1.06634 1.45041 1.16525 1.76752 0.99025 1.16045 1.13870 1.23826 0.96105 0.97306 0.94466 1.19475 0.94173 1.09335 1.00365 1.19100 0.87972 0.95146 0.90904 1.66427 1.38907 1.13701 1.02830 1.21778 0.87290 0.91061 0.94181 1.20974 1.03800 0.99935 0.91106 1.22159 0.98126 1.02723 0.98647 1.19977 0.92026 0.93390 0.94328 1.18594 0.85983 0.84940 0.82176 1.90650 1.78937 1.24419 1.54551 1.43629 1.05542 1.04791 1.62967 1.18590 0.80353 1.20610 1.27443 0.93541 1.26212 0.94569 0.97296 1.00350 1.69814 1.06606 1.37993 1.39104 0.86016 0.79188 0.80214 0.78636 1.15513 1.21058 1.17241 1.22402 1.00106 0.83240 0.99778 1.22012 1.00537 1.02049 0.96434 0.90669 0.91533 0.91466 0.93238 0.91650 0.93004 0.87386 0.92273 0.79432 0.87458 0.88180 0.89081 0.82337 0.90673 0.90637 0.87977 0.88555 0.93778 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.67 71.99 0.70 -0.96 16 2 C -0.13 -2.37 5.66 30.60 0.17 -2.19 16 3 C 0.16 3.40 3.17 44.99 0.14 3.54 16 4 H 0.11 2.21 8.07 -2.39 -0.02 2.19 16 5 C -0.15 -2.66 9.21 71.98 0.66 -2.00 16 6 N -0.38 -11.34 3.33 -324.50 -1.08 -12.42 16 7 N -0.24 -8.10 12.29 -56.51 -0.69 -8.80 16 8 C 0.08 2.89 11.90 85.62 1.02 3.91 16 9 C -0.22 -8.41 6.04 -21.16 -0.13 -8.54 16 10 C 0.31 10.17 7.96 134.11 1.07 11.24 16 11 N -0.50 -14.43 10.25 -181.14 -1.86 -16.28 16 12 C 0.21 5.22 6.77 42.69 0.29 5.51 16 13 C -0.10 -1.46 10.14 71.24 0.72 -0.73 16 14 C -0.19 -5.95 7.35 22.65 0.17 -5.79 16 15 C 0.02 0.66 4.86 -19.73 -0.10 0.57 16 16 C 0.49 24.18 7.04 86.73 0.61 24.79 16 17 O -0.60 -34.78 16.95 -4.09 -0.07 -34.85 16 18 N -0.45 -21.93 2.16 -639.04 -1.38 -23.31 16 19 C -0.34 -19.93 9.35 84.15 0.79 -19.14 16 20 H 0.05 3.19 7.88 -2.91 -0.02 3.16 16 21 C 0.02 1.08 5.26 84.99 0.45 1.53 16 22 N -0.90 -52.13 13.95 21.70 0.30 -51.82 16 23 Si 0.94 39.07 25.25 68.60 1.73 40.80 16 24 H -0.23 -8.16 6.53 99.48 0.65 -7.51 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 27 C 0.07 2.51 4.51 86.38 0.39 2.90 16 28 C -0.15 -5.17 10.20 71.98 0.73 -4.44 16 29 H 0.07 0.67 6.56 -2.39 -0.02 0.65 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 34 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.11 1.15 6.57 -2.39 -0.02 1.14 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.19 7.00 8.06 -2.91 -0.02 6.98 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 1.13 8.07 -2.39 -0.02 1.11 16 40 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.16 4.34 7.21 -2.91 -0.02 4.32 16 42 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 43 H 0.08 2.90 3.58 -2.38 -0.01 2.89 16 44 H 0.10 3.20 4.40 -2.39 -0.01 3.19 16 45 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.04 1.53 7.95 -2.39 -0.02 1.51 16 47 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -76.20 382.08 5.56 -70.64 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.92 Total: 25.83 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 7.68 Total: 10.20 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -4.71 Total: -112.63 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -0.07 Total: -34.85 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.73 Total: 40.80 kcal Total: -76.20 5.56 -70.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127975157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.152 kcal (2) G-P(sol) polarization free energy of solvation -76.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds