Wall clock time and date at job start Tue Mar 31 2020 15:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46733 * 2 1 4 4 H 1.08999 * 109.47534 * 305.00006 * 3 2 1 5 5 C 1.52996 * 109.47201 * 65.00602 * 3 2 1 6 6 N 1.46504 * 109.46456 * 185.00103 * 3 2 1 7 7 N 1.39984 * 125.90911 * 300.08078 * 6 3 2 8 8 C 1.30245 * 109.76094 * 180.32960 * 7 6 3 9 9 C 1.41114 * 108.58847 * 359.76300 * 8 7 6 10 10 C 1.37082 * 125.90501 * 120.00683 * 6 3 2 11 11 N 1.32512 * 133.44734 * 359.96532 * 10 6 3 12 12 C 1.31477 * 121.97818 * 179.68595 * 11 10 6 13 13 C 1.50696 * 119.16890 * 180.02562 * 12 11 10 14 14 C 1.38657 * 121.66751 * 0.02562 * 12 11 10 15 15 C 1.39337 * 119.36394 * 359.97438 * 14 12 11 16 16 C 1.47869 * 121.08620 * 179.97438 * 15 14 12 17 17 O 1.21549 * 120.00014 * 132.07963 * 16 15 14 18 18 N 1.34774 * 120.00132 * 312.07079 * 16 15 14 19 19 C 1.46505 * 120.00131 * 4.45151 * 18 16 15 20 20 C 1.46495 * 120.00371 * 184.44446 * 18 16 15 21 21 C 1.50704 * 109.47252 * 90.00228 * 20 18 16 22 22 H 1.08003 * 119.99290 * 0.02562 * 21 20 18 23 23 C 1.37875 * 120.00405 * 180.02562 * 21 20 18 24 24 N 1.31515 * 119.99594 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00082 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47089 * 59.99858 * 25 23 21 27 27 H 1.48497 * 109.46926 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46758 * 299.99657 * 25 23 21 29 29 H 1.08995 * 109.47313 * 59.99697 * 1 2 3 30 30 H 1.09001 * 109.47310 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47148 * 299.99866 * 1 2 3 32 32 H 1.08997 * 109.46678 * 239.99965 * 2 1 3 33 33 H 1.08995 * 109.47313 * 120.00303 * 2 1 3 34 34 H 1.08999 * 109.47363 * 59.99300 * 5 3 2 35 35 H 1.09001 * 109.47414 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.46939 * 299.99121 * 5 3 2 37 37 H 1.08002 * 125.71142 * 179.76530 * 8 7 6 38 38 H 1.09009 * 109.46913 * 90.00339 * 13 12 11 39 39 H 1.08997 * 109.47227 * 209.99707 * 13 12 11 40 40 H 1.09002 * 109.47139 * 330.00649 * 13 12 11 41 41 H 1.07999 * 120.31650 * 180.02562 * 14 12 11 42 42 H 1.08998 * 109.47214 * 92.92590 * 19 18 16 43 43 H 1.09001 * 109.47133 * 212.92689 * 19 18 16 44 44 H 1.08997 * 109.46706 * 332.92830 * 19 18 16 45 45 H 1.09000 * 109.47834 * 210.00754 * 20 18 16 46 46 H 1.09006 * 109.47142 * 330.00434 * 20 18 16 47 47 H 0.97007 * 119.99593 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 7 3.5000 1.4442 -0.1204 7 7 4.3982 0.8486 0.7730 8 6 5.6198 1.0466 0.3669 9 6 5.5802 1.7881 -0.8331 10 6 4.2229 2.0281 -1.1282 11 7 3.8870 2.7111 -2.2129 12 6 4.7885 3.1851 -3.0443 13 6 4.3356 3.9537 -4.2588 14 6 6.1455 2.9955 -2.8320 15 6 6.5690 2.2859 -1.7101 16 6 8.0065 2.0608 -1.4468 17 8 8.4633 2.2782 -0.3416 18 7 8.8103 1.6144 -2.4323 19 6 8.2821 1.4451 -3.7883 20 6 10.2122 1.2986 -2.1476 21 6 10.3288 -0.1478 -1.7410 22 1 9.4467 -0.7697 -1.6992 23 6 11.5613 -0.6773 -1.4222 24 7 12.6353 0.0800 -1.4736 25 14 11.7058 -2.4704 -0.9189 26 1 11.2185 -3.3353 -2.0232 27 1 13.1268 -2.7904 -0.6302 28 1 10.8870 -2.7107 0.2964 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0699 1.5874 2.1492 35 1 1.9989 3.1541 1.3076 36 1 0.5489 2.1252 1.3969 37 1 6.5135 0.7011 0.8651 38 1 4.2641 5.0132 -4.0124 39 1 5.0557 3.8161 -5.0653 40 1 3.3592 3.5881 -4.5770 41 1 6.8674 3.3948 -3.5290 42 1 8.4613 2.3531 -4.3640 43 1 8.7815 0.6046 -4.2704 44 1 7.2106 1.2516 -3.7392 45 1 10.8129 1.4747 -3.0400 46 1 10.5705 1.9338 -1.3374 47 1 13.5026 -0.2926 -1.2498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161039442.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:12 Heat of formation + Delta-G solvation = 64.312464 kcal Electronic energy + Delta-G solvation = -28473.233823 eV Core-core repulsion = 24657.743601 eV Total energy + Delta-G solvation = -3815.490223 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.79334 -39.29472 -38.17099 -36.49904 -34.95747 -33.23174 -32.44342 -31.92527 -31.01742 -28.95415 -27.97654 -27.35587 -26.17748 -25.04628 -24.16210 -22.67229 -22.22466 -21.94954 -20.07359 -18.57340 -17.74428 -17.05367 -16.57906 -16.47344 -15.78136 -15.35638 -15.28621 -15.03869 -14.58592 -14.30915 -14.19394 -14.00417 -13.71795 -13.48005 -13.18677 -12.90736 -12.77544 -12.55038 -12.45971 -12.22296 -12.17180 -12.02781 -11.99462 -11.88443 -11.73950 -11.35742 -11.25378 -11.11964 -10.95639 -10.73951 -10.64476 -10.31057 -10.20897 -9.84504 -9.69488 -9.03784 -8.73767 -8.47186 -8.26094 -7.77012 -6.08560 -4.13962 0.55713 1.20575 2.09287 2.53884 3.20461 3.30547 3.34982 3.38558 3.62160 3.88415 3.97741 4.24389 4.41088 4.58246 4.59186 4.67219 4.80714 4.83977 4.91643 5.02854 5.07888 5.21128 5.24884 5.29384 5.37487 5.42760 5.43700 5.45627 5.60203 5.61489 5.64021 5.69854 5.70970 5.82307 5.85108 5.96151 5.99527 6.03862 6.17578 6.29370 6.53265 6.86777 6.95978 7.35327 7.42413 7.48572 7.86949 7.89264 8.16537 8.23733 8.76639 8.93757 9.51342 10.99527 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013169 B = 0.003416 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.767348 B = 8195.826533 C = 9503.871036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C 0.172 3.828 4 H 0.105 0.895 5 C -0.162 4.162 6 N -0.387 5.387 7 N -0.242 5.242 8 C 0.099 3.901 9 C -0.193 4.193 10 C 0.316 3.684 11 N -0.502 5.502 12 C 0.193 3.807 13 C -0.103 4.103 14 C -0.192 4.192 15 C 0.021 3.979 16 C 0.544 3.456 17 O -0.524 6.524 18 N -0.587 5.587 19 C 0.075 3.925 20 C 0.244 3.756 21 C -0.531 4.531 22 H 0.058 0.942 23 C 0.063 3.937 24 N -0.893 5.893 25 Si 0.898 3.102 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.275 1.275 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.201 0.799 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.148 0.852 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.037 0.963 46 H 0.048 0.952 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.293 5.413 -4.183 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.070 3.930 4 H 0.123 0.877 5 C -0.220 4.220 6 N -0.178 5.178 7 N -0.055 5.055 8 C -0.097 4.097 9 C -0.204 4.204 10 C 0.076 3.924 11 N -0.219 5.219 12 C 0.044 3.956 13 C -0.160 4.160 14 C -0.215 4.215 15 C 0.006 3.994 16 C 0.330 3.670 17 O -0.401 6.401 18 N -0.319 5.319 19 C -0.068 4.068 20 C 0.126 3.874 21 C -0.570 4.570 22 H 0.076 0.924 23 C -0.139 4.139 24 N -0.532 5.532 25 Si 0.726 3.274 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.217 0.783 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.165 0.835 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.631 5.071 -2.730 24.323 hybrid contribution 1.584 -0.861 -0.218 1.816 sum -22.047 4.210 -2.947 22.638 Atomic orbital electron populations 1.21790 0.94487 1.02319 1.02155 1.21882 0.96367 0.95297 1.03559 1.21301 0.73658 0.97780 1.00219 0.87731 1.22190 1.01910 1.00981 0.96921 1.48635 1.05656 1.46191 1.17340 1.76847 0.99288 1.15980 1.13371 1.23991 0.95874 0.96042 0.93748 1.19277 0.93217 1.08177 0.99695 1.18903 0.88458 0.94782 0.90271 1.66199 1.39028 1.13494 1.03178 1.21058 0.88429 0.92393 0.93709 1.20773 1.02856 0.99397 0.92995 1.22009 0.96805 1.03872 0.98809 1.20175 0.94129 0.93080 0.91990 1.18012 0.84508 0.79200 0.85326 1.90786 1.75307 1.51438 1.22600 1.48112 1.13465 1.62370 1.07906 1.21901 0.99231 1.01527 0.84189 1.19388 0.73695 0.96588 0.97752 1.21375 0.93562 0.95364 1.46672 0.92410 1.24919 0.95547 0.98240 0.95206 1.69921 0.98800 1.36031 1.48440 0.86555 0.77070 0.84595 0.79221 1.20220 1.21117 1.20072 0.92428 0.92100 0.92097 0.91524 0.90525 0.91124 0.92215 0.90560 0.78281 0.89949 0.89962 0.90283 0.83458 0.93159 0.90611 0.91897 0.94545 0.93412 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.67 37.16 0.36 -0.67 16 2 C -0.13 -1.28 5.66 -26.73 -0.15 -1.43 16 3 C 0.17 1.88 3.17 -67.93 -0.22 1.67 16 4 H 0.10 1.09 8.07 -51.93 -0.42 0.67 16 5 C -0.16 -1.53 9.21 37.16 0.34 -1.19 16 6 N -0.39 -5.68 3.33 -53.91 -0.18 -5.86 16 7 N -0.24 -3.88 12.29 30.79 0.38 -3.50 16 8 C 0.10 1.71 11.79 -17.13 -0.20 1.51 16 9 C -0.19 -3.38 6.00 -106.64 -0.64 -4.02 16 10 C 0.32 5.05 7.96 -156.07 -1.24 3.81 16 11 N -0.50 -7.24 10.25 -8.59 -0.09 -7.33 16 12 C 0.19 2.40 6.77 -82.59 -0.56 1.84 16 13 C -0.10 -0.81 10.14 36.00 0.37 -0.45 16 14 C -0.19 -2.63 7.30 -39.02 -0.28 -2.91 16 15 C 0.02 0.36 4.98 -104.41 -0.52 -0.16 16 16 C 0.54 11.51 7.22 -12.32 -0.09 11.42 16 17 O -0.52 -13.08 16.48 5.32 0.09 -12.99 16 18 N -0.59 -12.29 2.86 -184.07 -0.53 -12.81 16 19 C 0.08 1.18 9.10 59.85 0.54 1.72 16 20 C 0.24 6.24 5.21 -5.19 -0.03 6.21 16 21 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 22 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 23 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 25 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.36 6.57 -51.93 -0.34 0.02 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.52 6.57 -51.93 -0.34 0.18 16 37 H 0.20 3.38 8.06 -52.49 -0.42 2.96 16 38 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 39 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.15 1.67 6.55 -52.49 -0.34 1.33 16 42 H 0.05 0.64 7.57 -51.93 -0.39 0.24 16 43 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 44 H 0.06 0.88 5.64 -51.93 -0.29 0.59 16 45 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 46 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 390.25 15.07 5.88 5.88 Total: -1.00 -33.62 390.25 -8.59 -42.21 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.12 Total: -0.74 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -2.74 Total: 3.94 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.32 Total: -54.87 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.09 Total: -12.99 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.62 -8.59 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161039442.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.522 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds