Wall clock time and date at job start Tue Mar 31 2020 15:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46733 * 2 1 4 4 H 1.08999 * 109.47534 * 305.00006 * 3 2 1 5 5 C 1.52996 * 109.47201 * 65.00602 * 3 2 1 6 6 N 1.46504 * 109.46456 * 185.00103 * 3 2 1 7 7 N 1.39984 * 125.90911 * 300.08078 * 6 3 2 8 8 C 1.30245 * 109.76094 * 180.32960 * 7 6 3 9 9 C 1.41114 * 108.58847 * 359.76300 * 8 7 6 10 10 C 1.37082 * 125.90501 * 120.00683 * 6 3 2 11 11 N 1.32512 * 133.44734 * 359.96532 * 10 6 3 12 12 C 1.31477 * 121.97818 * 179.68595 * 11 10 6 13 13 C 1.50696 * 119.16890 * 180.02562 * 12 11 10 14 14 C 1.38657 * 121.66751 * 0.02562 * 12 11 10 15 15 C 1.39337 * 119.36394 * 359.97438 * 14 12 11 16 16 C 1.47869 * 121.08620 * 179.97438 * 15 14 12 17 17 O 1.21549 * 120.00014 * 132.07963 * 16 15 14 18 18 N 1.34774 * 120.00132 * 312.07079 * 16 15 14 19 19 C 1.46505 * 120.00131 * 4.45151 * 18 16 15 20 20 C 1.46495 * 120.00371 * 184.44446 * 18 16 15 21 21 C 1.50704 * 109.47252 * 90.00228 * 20 18 16 22 22 H 1.08003 * 119.99290 * 0.02562 * 21 20 18 23 23 C 1.37875 * 120.00405 * 180.02562 * 21 20 18 24 24 N 1.31515 * 119.99594 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00082 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47089 * 59.99858 * 25 23 21 27 27 H 1.48497 * 109.46926 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46758 * 299.99657 * 25 23 21 29 29 H 1.08995 * 109.47313 * 59.99697 * 1 2 3 30 30 H 1.09001 * 109.47310 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47148 * 299.99866 * 1 2 3 32 32 H 1.08997 * 109.46678 * 239.99965 * 2 1 3 33 33 H 1.08995 * 109.47313 * 120.00303 * 2 1 3 34 34 H 1.08999 * 109.47363 * 59.99300 * 5 3 2 35 35 H 1.09001 * 109.47414 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.46939 * 299.99121 * 5 3 2 37 37 H 1.08002 * 125.71142 * 179.76530 * 8 7 6 38 38 H 1.09009 * 109.46913 * 90.00339 * 13 12 11 39 39 H 1.08997 * 109.47227 * 209.99707 * 13 12 11 40 40 H 1.09002 * 109.47139 * 330.00649 * 13 12 11 41 41 H 1.07999 * 120.31650 * 180.02562 * 14 12 11 42 42 H 1.08998 * 109.47214 * 92.92590 * 19 18 16 43 43 H 1.09001 * 109.47133 * 212.92689 * 19 18 16 44 44 H 1.08997 * 109.46706 * 332.92830 * 19 18 16 45 45 H 1.09000 * 109.47834 * 210.00754 * 20 18 16 46 46 H 1.09006 * 109.47142 * 330.00434 * 20 18 16 47 47 H 0.97007 * 119.99593 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 7 3.5000 1.4442 -0.1204 7 7 4.3982 0.8486 0.7730 8 6 5.6198 1.0466 0.3669 9 6 5.5802 1.7881 -0.8331 10 6 4.2229 2.0281 -1.1282 11 7 3.8870 2.7111 -2.2129 12 6 4.7885 3.1851 -3.0443 13 6 4.3356 3.9537 -4.2588 14 6 6.1455 2.9955 -2.8320 15 6 6.5690 2.2859 -1.7101 16 6 8.0065 2.0608 -1.4468 17 8 8.4633 2.2782 -0.3416 18 7 8.8103 1.6144 -2.4323 19 6 8.2821 1.4451 -3.7883 20 6 10.2122 1.2986 -2.1476 21 6 10.3288 -0.1478 -1.7410 22 1 9.4467 -0.7697 -1.6992 23 6 11.5613 -0.6773 -1.4222 24 7 12.6353 0.0800 -1.4736 25 14 11.7058 -2.4704 -0.9189 26 1 11.2185 -3.3353 -2.0232 27 1 13.1268 -2.7904 -0.6302 28 1 10.8870 -2.7107 0.2964 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0699 1.5874 2.1492 35 1 1.9989 3.1541 1.3076 36 1 0.5489 2.1252 1.3969 37 1 6.5135 0.7011 0.8651 38 1 4.2641 5.0132 -4.0124 39 1 5.0557 3.8161 -5.0653 40 1 3.3592 3.5881 -4.5770 41 1 6.8674 3.3948 -3.5290 42 1 8.4613 2.3531 -4.3640 43 1 8.7815 0.6046 -4.2704 44 1 7.2106 1.2516 -3.7392 45 1 10.8129 1.4747 -3.0400 46 1 10.5705 1.9338 -1.3374 47 1 13.5026 -0.2926 -1.2498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161039442.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:11 Heat of formation + Delta-G solvation = 44.023323 kcal Electronic energy + Delta-G solvation = -28474.113626 eV Core-core repulsion = 24657.743601 eV Total energy + Delta-G solvation = -3816.370026 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.98533 -40.80537 -39.41074 -37.40591 -36.70847 -34.93859 -34.02306 -32.92523 -32.02841 -29.93876 -29.68428 -28.41487 -27.64881 -26.06836 -25.66096 -24.12434 -23.25632 -23.19023 -21.27531 -19.88352 -18.96541 -18.71330 -18.27169 -17.83937 -17.15543 -16.90295 -16.36507 -16.21841 -16.07348 -15.75194 -15.47661 -14.95100 -14.77319 -14.56145 -14.39304 -14.30633 -13.95437 -13.81840 -13.52670 -13.36633 -13.22603 -13.13001 -13.01681 -12.87953 -12.79804 -12.78410 -12.68036 -12.56739 -12.32452 -12.21725 -11.98507 -11.76795 -11.69321 -11.48591 -11.23691 -10.64811 -10.47809 -9.90437 -9.52769 -9.41086 -8.24117 -6.38494 -0.67218 0.05743 1.01511 1.23894 1.36549 1.40180 1.47275 1.67909 2.14312 2.38703 2.59868 2.95263 3.06006 3.14334 3.40351 3.62201 3.64139 3.78792 3.84908 4.01346 4.12127 4.28976 4.30296 4.35325 4.37487 4.44884 4.55666 4.66260 4.67941 4.80357 4.84403 4.89874 4.91389 4.94299 4.98540 5.00492 5.05582 5.06468 5.17152 5.21305 5.28744 5.35073 5.47527 5.50593 5.77089 5.82590 6.02843 6.26738 6.56187 6.69467 6.76152 7.15246 7.34137 8.83016 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013169 B = 0.003416 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.767348 B = 8195.826533 C = 9503.871036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.162 3.838 4 H 0.116 0.884 5 C -0.156 4.156 6 N -0.381 5.381 7 N -0.245 5.245 8 C 0.075 3.925 9 C -0.220 4.220 10 C 0.306 3.694 11 N -0.500 5.500 12 C 0.202 3.798 13 C -0.100 4.100 14 C -0.173 4.173 15 C -0.003 4.003 16 C 0.542 3.458 17 O -0.578 6.578 18 N -0.592 5.592 19 C 0.070 3.930 20 C 0.259 3.741 21 C -0.547 4.547 22 H 0.051 0.949 23 C 0.013 3.987 24 N -0.925 5.925 25 Si 0.963 3.037 26 H -0.261 1.261 27 H -0.277 1.277 28 H -0.279 1.279 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.108 0.892 37 H 0.187 0.813 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.177 0.823 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.035 0.965 46 H 0.005 0.995 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.131 5.717 -6.521 26.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.062 3.938 4 H 0.134 0.866 5 C -0.213 4.213 6 N -0.172 5.172 7 N -0.059 5.059 8 C -0.120 4.120 9 C -0.231 4.231 10 C 0.066 3.934 11 N -0.217 5.217 12 C 0.052 3.948 13 C -0.157 4.157 14 C -0.195 4.195 15 C -0.017 4.017 16 C 0.330 3.670 17 O -0.459 6.459 18 N -0.322 5.322 19 C -0.071 4.071 20 C 0.138 3.862 21 C -0.586 4.586 22 H 0.069 0.931 23 C -0.186 4.186 24 N -0.564 5.564 25 Si 0.787 3.213 26 H -0.186 1.186 27 H -0.202 1.202 28 H -0.204 1.204 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.127 0.873 37 H 0.204 0.796 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.107 0.893 41 H 0.194 0.806 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.053 0.947 46 H 0.023 0.977 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -26.509 5.364 -5.102 27.524 hybrid contribution 2.383 -0.864 0.437 2.572 sum -24.126 4.500 -4.665 24.982 Atomic orbital electron populations 1.21769 0.91877 1.03172 1.03289 1.21831 0.98488 0.93993 1.02191 1.21721 0.71616 0.98995 1.01472 0.86635 1.22166 1.03869 0.99844 0.95446 1.49017 1.06674 1.45009 1.16491 1.76761 0.99162 1.16086 1.13892 1.23856 0.96012 0.97479 0.94620 1.19443 0.94338 1.09270 1.00038 1.19083 0.87898 0.95383 0.91078 1.66398 1.39400 1.13207 1.02700 1.21911 0.87636 0.91018 0.94249 1.20979 1.04066 0.99442 0.91227 1.22386 0.98188 1.01599 0.97300 1.19864 0.91366 0.96137 0.94320 1.18578 0.86063 0.77967 0.84411 1.90740 1.76676 1.53709 1.24770 1.48079 1.11885 1.62014 1.10213 1.22211 1.00080 1.03361 0.81474 1.18879 0.76523 0.94778 0.96008 1.21638 0.93549 0.96399 1.46968 0.93063 1.25776 0.95179 1.02686 0.94999 1.70028 0.99310 1.37932 1.49112 0.85538 0.77337 0.79461 0.78935 1.18604 1.20154 1.20424 0.91408 0.91460 0.90787 0.93008 0.91803 0.92390 0.93143 0.87306 0.79636 0.88134 0.87145 0.89343 0.80598 0.89267 0.91105 0.89924 0.94710 0.97691 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.67 71.98 0.70 -0.92 16 2 C -0.13 -2.32 5.66 30.60 0.17 -2.14 16 3 C 0.16 3.35 3.17 44.99 0.14 3.49 16 4 H 0.12 2.16 8.07 -2.39 -0.02 2.14 16 5 C -0.16 -2.72 9.21 71.98 0.66 -2.06 16 6 N -0.38 -11.18 3.33 -324.48 -1.08 -12.26 16 7 N -0.24 -8.23 12.29 -56.50 -0.69 -8.92 16 8 C 0.08 2.78 11.79 85.63 1.01 3.79 16 9 C -0.22 -7.95 6.00 -21.17 -0.13 -8.08 16 10 C 0.31 9.63 7.96 134.13 1.07 10.70 16 11 N -0.50 -13.30 10.25 -181.10 -1.86 -15.15 16 12 C 0.20 4.35 6.77 42.71 0.29 4.64 16 13 C -0.10 -1.08 10.14 71.23 0.72 -0.35 16 14 C -0.17 -4.28 7.30 22.63 0.17 -4.12 16 15 C 0.00 -0.10 4.98 -19.73 -0.10 -0.20 16 16 C 0.54 23.85 7.22 86.79 0.63 24.48 16 17 O -0.58 -30.94 16.48 -3.87 -0.06 -31.00 16 18 N -0.59 -25.24 2.86 -854.54 -2.44 -27.68 16 19 C 0.07 2.08 9.10 127.77 1.16 3.24 16 20 C 0.26 13.78 5.21 85.64 0.45 14.22 16 21 C -0.55 -31.39 9.39 25.60 0.24 -31.15 16 22 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 23 C 0.01 0.76 5.46 84.65 0.46 1.22 16 24 N -0.92 -55.31 13.29 21.45 0.28 -55.03 16 25 Si 0.96 44.88 29.54 68.60 2.03 46.90 16 26 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 28 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.65 6.57 -2.39 -0.02 0.64 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.11 1.17 6.57 -2.39 -0.02 1.16 16 37 H 0.19 7.12 8.06 -2.91 -0.02 7.10 16 38 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.11 0.64 8.07 -2.39 -0.02 0.63 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.18 3.26 6.55 -2.91 -0.02 3.24 16 42 H 0.09 1.95 7.57 -2.39 -0.02 1.93 16 43 H 0.07 2.17 8.09 -2.39 -0.02 2.15 16 44 H 0.08 2.12 5.64 -2.39 -0.01 2.10 16 45 H 0.03 1.84 8.07 -2.39 -0.02 1.82 16 46 H 0.00 0.30 7.36 -2.38 -0.02 0.29 16 47 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 Total: -1.00 -78.09 390.25 4.79 -73.31 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.97 Total: 13.07 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 7.64 Total: 16.77 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -5.79 Total: -119.04 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.06 Total: -31.00 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -78.09 4.79 -73.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161039442.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.329 kcal (2) G-P(sol) polarization free energy of solvation -78.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds