Wall clock time and date at job start Tue Mar 31 2020 15:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46559 * 2 1 4 4 H 1.08998 * 109.47286 * 55.00563 * 3 2 1 5 5 C 1.50702 * 109.46834 * 174.99830 * 3 2 1 6 6 H 1.08010 * 119.99871 * 120.00302 * 5 3 2 7 7 C 1.37881 * 120.00547 * 300.00042 * 5 3 2 8 8 N 1.31513 * 119.99434 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00560 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46770 * 59.99965 * 9 7 5 11 11 H 1.48493 * 109.47359 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47104 * 300.00764 * 9 7 5 13 13 N 1.46494 * 109.47584 * 294.99729 * 3 2 1 14 14 C 1.34775 * 119.99717 * 84.99879 * 13 3 2 15 15 O 1.21571 * 120.00074 * 0.02562 * 14 13 3 16 16 C 1.47690 * 120.00077 * 180.02562 * 14 13 3 17 17 C 1.39549 * 120.40723 * 353.71810 * 16 14 13 18 18 C 1.39616 * 117.94494 * 180.02562 * 17 16 14 19 19 C 1.45984 * 134.12032 * 179.97438 * 18 17 16 20 20 N 1.30203 * 107.58514 * 180.02562 * 19 18 17 21 21 N 1.39801 * 110.13908 * 359.97438 * 20 19 18 22 22 C 1.46498 * 125.33756 * 180.02562 * 21 20 19 23 23 C 1.53006 * 109.47152 * 300.03188 * 22 21 20 24 24 C 1.52997 * 109.46987 * 60.02841 * 22 21 20 25 25 C 1.36630 * 109.32227 * 0.27336 * 21 20 19 26 26 N 1.32903 * 133.27239 * 180.47295 * 25 21 20 27 27 C 1.31219 * 121.84363 * 179.55758 * 26 25 21 28 28 C 1.50703 * 119.30909 * 179.72111 * 27 26 25 29 29 H 1.09000 * 109.47242 * 299.99682 * 1 2 3 30 30 H 1.08997 * 109.47490 * 60.00125 * 1 2 3 31 31 H 1.09008 * 109.46540 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47242 * 240.00318 * 2 1 3 33 33 H 1.08997 * 109.47490 * 119.99875 * 2 1 3 34 34 H 0.97001 * 120.00084 * 180.02562 * 8 7 5 35 35 H 0.97000 * 120.00628 * 265.00535 * 13 3 2 36 36 H 1.07997 * 121.02331 * 0.03354 * 17 16 14 37 37 H 1.07995 * 126.20674 * 0.02562 * 19 18 17 38 38 H 1.08993 * 109.47525 * 180.02562 * 22 21 20 39 39 H 1.08998 * 109.47018 * 179.97438 * 23 22 21 40 40 H 1.09002 * 109.47000 * 59.99808 * 23 22 21 41 41 H 1.08997 * 109.46964 * 299.99817 * 23 22 21 42 42 H 1.08998 * 109.47524 * 299.99829 * 24 22 21 43 43 H 1.08999 * 109.47217 * 60.00412 * 24 22 21 44 44 H 1.08998 * 109.47128 * 179.97438 * 24 22 21 45 45 H 1.09004 * 109.46620 * 263.35471 * 28 27 26 46 46 H 1.08998 * 109.47188 * 23.35865 * 28 27 26 47 47 H 1.08996 * 109.46949 * 143.35693 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8891 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8802 1.3812 10 1 6.5003 2.2802 1.3809 11 1 6.3978 0.2159 2.6498 12 1 6.5967 0.1456 0.2343 13 7 1.6524 2.0975 -1.2517 14 6 0.4350 2.6643 -1.3669 15 8 -0.3413 2.6324 -0.4318 16 6 0.0441 3.3242 -2.6290 17 6 0.9708 3.4814 -3.6604 18 6 0.5462 4.1130 -4.8309 19 6 1.1942 4.4553 -6.0935 20 7 0.3089 5.0479 -6.8420 21 7 -0.9126 5.1330 -6.1672 22 6 -2.1356 5.7368 -6.7018 23 6 -1.8770 7.2091 -7.0283 24 6 -2.5549 4.9983 -7.9744 25 6 -0.7852 4.5697 -4.9290 26 7 -1.6300 4.3892 -3.9190 27 6 -1.2626 3.7988 -2.8062 28 6 -2.2661 3.6298 -1.6947 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8293 -0.0611 2.9498 35 1 2.2718 2.1233 -1.9978 36 1 1.9851 3.1253 -3.5564 37 1 2.2215 4.2535 -6.3586 38 1 -2.9312 5.6634 -5.9604 39 1 -2.7869 7.6582 -7.4264 40 1 -1.0815 7.2825 -7.7698 41 1 -1.5783 7.7353 -6.1216 42 1 -1.7594 5.0717 -8.7160 43 1 -2.7392 3.9495 -7.7419 44 1 -3.4651 5.4473 -8.3719 45 1 -2.1482 4.4380 -0.9728 46 1 -3.2742 3.6561 -2.1082 47 1 -2.1015 2.6731 -1.1991 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183848800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:18 Heat of formation + Delta-G solvation = 55.984479 kcal Electronic energy + Delta-G solvation = -28365.638175 eV Core-core repulsion = 24549.786824 eV Total energy + Delta-G solvation = -3815.851351 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70445 -39.55662 -37.84036 -35.81649 -35.11018 -33.22583 -32.18815 -31.60995 -30.86779 -29.74653 -27.65478 -27.60341 -26.73856 -24.16337 -23.20172 -22.97973 -22.12763 -20.63510 -19.91662 -19.39555 -18.12860 -17.62854 -16.31867 -16.10058 -15.78823 -15.25770 -15.12608 -14.74173 -14.68952 -14.40294 -14.06060 -13.70034 -13.58829 -13.25477 -13.10514 -12.78924 -12.68589 -12.56899 -12.46563 -12.16437 -11.84639 -11.79477 -11.62156 -11.59155 -11.52435 -11.26215 -11.00852 -10.96123 -10.84503 -10.49379 -10.34931 -10.18605 -9.67694 -9.63084 -9.07903 -8.94850 -8.84438 -8.51096 -8.35689 -7.83652 -6.14423 -4.24021 0.70488 0.94730 1.95245 2.32465 3.24007 3.28682 3.29964 3.30924 3.86344 4.01567 4.04599 4.16630 4.36365 4.46782 4.56036 4.62567 4.74118 4.80393 4.97393 5.12144 5.17154 5.20705 5.29301 5.40582 5.45318 5.52049 5.66425 5.78120 5.81834 5.84972 5.95282 6.02065 6.16605 6.32466 6.38657 6.45031 6.52854 6.64832 6.81929 7.03615 7.17989 7.32068 7.34343 7.41303 7.59408 7.69543 7.87118 7.89586 8.15984 8.61004 8.74220 9.06368 9.43206 10.90789 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019184 B = 0.002868 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.216078 B = 9762.240171 C =10729.397348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.554 3.446 15 O -0.537 6.537 16 C -0.219 4.219 17 C 0.041 3.959 18 C -0.245 4.245 19 C 0.092 3.908 20 N -0.243 5.243 21 N -0.388 5.388 22 C 0.163 3.837 23 C -0.160 4.160 24 C -0.160 4.160 25 C 0.332 3.668 26 N -0.516 5.516 27 C 0.252 3.748 28 C -0.109 4.109 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.022 0.978 32 H 0.031 0.969 33 H 0.099 0.901 34 H 0.265 0.735 35 H 0.386 0.614 36 H 0.146 0.854 37 H 0.202 0.798 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.566 8.456 -17.189 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.349 5.349 14 C 0.339 3.661 15 O -0.418 6.418 16 C -0.226 4.226 17 C 0.013 3.987 18 C -0.255 4.255 19 C -0.107 4.107 20 N -0.054 5.054 21 N -0.179 5.179 22 C 0.062 3.938 23 C -0.218 4.218 24 C -0.218 4.218 25 C 0.093 3.907 26 N -0.232 5.232 27 C 0.102 3.898 28 C -0.166 4.166 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.219 0.781 36 H 0.164 0.836 37 H 0.218 0.782 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.083 0.917 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.300 9.273 -17.688 22.470 hybrid contribution 2.414 -0.621 0.422 2.528 sum -7.886 8.651 -17.266 20.860 Atomic orbital electron populations 1.21850 0.98314 0.98108 1.01237 1.21939 0.92680 0.99727 1.02316 1.18814 0.94212 0.89191 0.80744 0.93017 1.21183 0.90681 1.39230 1.06350 0.92169 1.24868 0.98548 0.94766 0.95379 1.69876 1.35227 1.37425 1.09320 0.86529 0.84909 0.78318 0.77477 1.20186 1.21139 1.20168 1.46447 1.14216 1.55585 1.18626 1.17692 0.83047 0.79099 0.86221 1.90694 1.50671 1.60673 1.39735 1.20862 0.95769 1.08504 0.97482 1.21294 0.99218 0.89293 0.88925 1.20401 0.95632 1.11559 0.97891 1.25082 0.99460 0.96238 0.89961 1.76596 0.90227 1.18504 1.20101 1.48398 1.09314 1.51166 1.09055 1.21293 0.82415 0.92922 0.97158 1.22145 1.02977 0.94045 1.02674 1.22137 1.02154 1.00715 0.96795 1.19111 0.90651 0.93164 0.87796 1.66577 1.35938 1.20677 1.00044 1.21376 0.92115 0.85781 0.90480 1.21147 0.95260 1.06136 0.94018 0.92991 0.94283 0.95876 0.95056 0.88242 0.92474 0.78117 0.83604 0.78162 0.87505 0.90713 0.91263 0.92169 0.91260 0.92168 0.90714 0.89539 0.91705 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.61 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.51 2.24 -69.08 -0.15 6.35 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.59 8.73 -34.44 -0.30 -13.89 16 6 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.00 11.29 55.43 0.63 -23.38 16 9 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.70 -13.74 4.97 -55.93 -0.28 -14.02 16 14 C 0.55 10.47 6.26 -12.40 -0.08 10.39 16 15 O -0.54 -11.34 10.46 5.30 0.06 -11.28 16 16 C -0.22 -3.50 5.89 -104.83 -0.62 -4.12 16 17 C 0.04 0.56 9.67 -38.58 -0.37 0.19 16 18 C -0.25 -3.26 6.36 -105.20 -0.67 -3.93 16 19 C 0.09 0.99 12.30 -15.14 -0.19 0.80 16 20 N -0.24 -2.92 12.20 31.87 0.39 -2.53 16 21 N -0.39 -4.87 3.31 -53.90 -0.18 -5.05 16 22 C 0.16 1.59 3.67 -67.93 -0.25 1.34 16 23 C -0.16 -1.30 9.43 37.16 0.35 -0.95 16 24 C -0.16 -1.29 9.43 37.16 0.35 -0.94 16 25 C 0.33 4.82 7.91 -156.10 -1.23 3.59 16 26 N -0.52 -7.91 10.25 -8.27 -0.08 -7.99 16 27 C 0.25 3.95 6.82 -82.14 -0.56 3.39 16 28 C -0.11 -1.57 8.83 36.01 0.32 -1.26 16 29 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 30 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 31 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.39 6.52 6.67 -40.82 -0.27 6.25 16 36 H 0.15 1.61 6.55 -52.49 -0.34 1.27 16 37 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.11 1.05 8.03 -51.93 -0.42 0.64 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.11 1.82 5.83 -51.93 -0.30 1.51 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -30.05 379.75 -9.03 -39.08 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.93 Total: 7.50 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -3.33 Total: -3.10 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.47 Total: -52.98 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.06 Total: -11.28 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.05 -9.03 -39.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183848800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.061 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds