Wall clock time and date at job start Tue Mar 31 2020 15:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46559 * 2 1 4 4 H 1.08998 * 109.47286 * 55.00563 * 3 2 1 5 5 C 1.50702 * 109.46834 * 174.99830 * 3 2 1 6 6 H 1.08010 * 119.99871 * 120.00302 * 5 3 2 7 7 C 1.37881 * 120.00547 * 300.00042 * 5 3 2 8 8 N 1.31513 * 119.99434 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00560 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46770 * 59.99965 * 9 7 5 11 11 H 1.48493 * 109.47359 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47104 * 300.00764 * 9 7 5 13 13 N 1.46494 * 109.47584 * 294.99729 * 3 2 1 14 14 C 1.34775 * 119.99717 * 84.99879 * 13 3 2 15 15 O 1.21571 * 120.00074 * 0.02562 * 14 13 3 16 16 C 1.47690 * 120.00077 * 180.02562 * 14 13 3 17 17 C 1.39549 * 120.40723 * 353.71810 * 16 14 13 18 18 C 1.39616 * 117.94494 * 180.02562 * 17 16 14 19 19 C 1.45984 * 134.12032 * 179.97438 * 18 17 16 20 20 N 1.30203 * 107.58514 * 180.02562 * 19 18 17 21 21 N 1.39801 * 110.13908 * 359.97438 * 20 19 18 22 22 C 1.46498 * 125.33756 * 180.02562 * 21 20 19 23 23 C 1.53006 * 109.47152 * 300.03188 * 22 21 20 24 24 C 1.52997 * 109.46987 * 60.02841 * 22 21 20 25 25 C 1.36630 * 109.32227 * 0.27336 * 21 20 19 26 26 N 1.32903 * 133.27239 * 180.47295 * 25 21 20 27 27 C 1.31219 * 121.84363 * 179.55758 * 26 25 21 28 28 C 1.50703 * 119.30909 * 179.72111 * 27 26 25 29 29 H 1.09000 * 109.47242 * 299.99682 * 1 2 3 30 30 H 1.08997 * 109.47490 * 60.00125 * 1 2 3 31 31 H 1.09008 * 109.46540 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47242 * 240.00318 * 2 1 3 33 33 H 1.08997 * 109.47490 * 119.99875 * 2 1 3 34 34 H 0.97001 * 120.00084 * 180.02562 * 8 7 5 35 35 H 0.97000 * 120.00628 * 265.00535 * 13 3 2 36 36 H 1.07997 * 121.02331 * 0.03354 * 17 16 14 37 37 H 1.07995 * 126.20674 * 0.02562 * 19 18 17 38 38 H 1.08993 * 109.47525 * 180.02562 * 22 21 20 39 39 H 1.08998 * 109.47018 * 179.97438 * 23 22 21 40 40 H 1.09002 * 109.47000 * 59.99808 * 23 22 21 41 41 H 1.08997 * 109.46964 * 299.99817 * 23 22 21 42 42 H 1.08998 * 109.47524 * 299.99829 * 24 22 21 43 43 H 1.08999 * 109.47217 * 60.00412 * 24 22 21 44 44 H 1.08998 * 109.47128 * 179.97438 * 24 22 21 45 45 H 1.09004 * 109.46620 * 263.35471 * 28 27 26 46 46 H 1.08998 * 109.47188 * 23.35865 * 28 27 26 47 47 H 1.08996 * 109.46949 * 143.35693 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8891 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8802 1.3812 10 1 6.5003 2.2802 1.3809 11 1 6.3978 0.2159 2.6498 12 1 6.5967 0.1456 0.2343 13 7 1.6524 2.0975 -1.2517 14 6 0.4350 2.6643 -1.3669 15 8 -0.3413 2.6324 -0.4318 16 6 0.0441 3.3242 -2.6290 17 6 0.9708 3.4814 -3.6604 18 6 0.5462 4.1130 -4.8309 19 6 1.1942 4.4553 -6.0935 20 7 0.3089 5.0479 -6.8420 21 7 -0.9126 5.1330 -6.1672 22 6 -2.1356 5.7368 -6.7018 23 6 -1.8770 7.2091 -7.0283 24 6 -2.5549 4.9983 -7.9744 25 6 -0.7852 4.5697 -4.9290 26 7 -1.6300 4.3892 -3.9190 27 6 -1.2626 3.7988 -2.8062 28 6 -2.2661 3.6298 -1.6947 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8293 -0.0611 2.9498 35 1 2.2718 2.1233 -1.9978 36 1 1.9851 3.1253 -3.5564 37 1 2.2215 4.2535 -6.3586 38 1 -2.9312 5.6634 -5.9604 39 1 -2.7869 7.6582 -7.4264 40 1 -1.0815 7.2825 -7.7698 41 1 -1.5783 7.7353 -6.1216 42 1 -1.7594 5.0717 -8.7160 43 1 -2.7392 3.9495 -7.7419 44 1 -3.4651 5.4473 -8.3719 45 1 -2.1482 4.4380 -0.9728 46 1 -3.2742 3.6561 -2.1082 47 1 -2.1015 2.6731 -1.1991 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183848800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:18 Heat of formation + Delta-G solvation = 38.929908 kcal Electronic energy + Delta-G solvation = -28366.377716 eV Core-core repulsion = 24549.786824 eV Total energy + Delta-G solvation = -3816.590893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.72986 -40.93419 -39.08734 -36.91116 -36.56487 -34.64322 -33.78993 -32.75610 -32.47731 -30.76966 -29.12445 -28.26766 -28.23910 -25.46814 -24.77578 -23.92268 -23.32921 -22.16669 -21.16428 -20.77402 -19.44354 -18.81565 -17.78671 -17.48816 -16.91196 -16.81640 -16.35880 -16.18457 -15.94882 -15.49038 -15.15742 -14.82958 -14.71682 -14.52865 -14.50975 -14.02628 -13.96895 -13.74701 -13.36353 -13.19988 -13.16701 -13.12085 -13.01435 -12.82359 -12.79877 -12.61452 -12.47173 -12.42626 -12.14573 -11.99903 -11.81589 -11.58120 -11.47417 -11.02017 -10.84422 -10.50220 -10.30590 -9.96737 -9.63523 -9.31821 -8.11375 -6.27942 -0.33750 -0.22571 1.04247 1.40598 1.48761 1.49761 1.57269 1.98358 2.36835 2.59172 2.76263 3.01748 3.17025 3.18721 3.49678 3.63187 3.72403 3.90534 3.93258 4.07823 4.21470 4.31106 4.45754 4.57008 4.64334 4.64430 4.67379 4.74570 4.76555 4.76969 4.80151 4.83907 4.92064 5.08183 5.13948 5.14814 5.17430 5.32422 5.35010 5.47556 5.50844 5.62307 5.67742 5.80988 5.86314 5.97922 6.22784 6.36335 6.77933 6.79845 7.01597 7.38007 7.59065 8.93575 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019184 B = 0.002868 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.216078 B = 9762.240171 C =10729.397348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.282 3.718 4 H 0.004 0.996 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.699 5.699 14 C 0.556 3.444 15 O -0.565 6.565 16 C -0.240 4.240 17 C 0.058 3.942 18 C -0.254 4.254 19 C 0.107 3.893 20 N -0.253 5.253 21 N -0.389 5.389 22 C 0.152 3.848 23 C -0.152 4.152 24 C -0.151 4.151 25 C 0.314 3.686 26 N -0.525 5.525 27 C 0.243 3.757 28 C -0.101 4.101 29 H 0.030 0.970 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.264 0.736 35 H 0.401 0.599 36 H 0.173 0.827 37 H 0.245 0.755 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.502 9.152 -20.067 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.022 0.978 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.791 3.209 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.348 5.348 14 C 0.343 3.657 15 O -0.447 6.447 16 C -0.247 4.247 17 C 0.030 3.970 18 C -0.264 4.264 19 C -0.091 4.091 20 N -0.064 5.064 21 N -0.180 5.180 22 C 0.052 3.948 23 C -0.210 4.210 24 C -0.209 4.209 25 C 0.074 3.926 26 N -0.242 5.242 27 C 0.093 3.907 28 C -0.158 4.158 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.236 0.764 36 H 0.190 0.810 37 H 0.261 0.739 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.119 0.881 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.245 9.996 -20.629 24.718 hybrid contribution 2.021 -0.762 1.215 2.478 sum -7.224 9.234 -19.414 22.679 Atomic orbital electron populations 1.21687 0.96890 0.99075 1.00464 1.21791 0.93866 0.99169 1.01222 1.18373 0.93555 0.89104 0.81122 0.97795 1.21561 0.91492 1.38831 1.06661 0.90886 1.25712 1.02960 0.94492 0.95132 1.70035 1.36996 1.38356 1.09840 0.85490 0.79557 0.78380 0.77462 1.19729 1.21512 1.18918 1.46145 1.15037 1.55863 1.17754 1.18055 0.82258 0.78421 0.86953 1.90688 1.51369 1.61522 1.41114 1.20538 0.96738 1.10521 0.96936 1.21509 0.99729 0.87743 0.88002 1.20669 0.95559 1.11427 0.98739 1.25785 1.00830 0.94373 0.88133 1.76619 0.90274 1.19130 1.20395 1.48765 1.10211 1.50630 1.08396 1.21587 0.81513 0.94040 0.97679 1.22091 1.04152 0.92785 1.01946 1.22083 1.03189 0.99872 0.95770 1.19482 0.91372 0.93467 0.88320 1.66565 1.36364 1.21084 1.00199 1.21441 0.92251 0.86079 0.90883 1.21017 0.96122 1.04892 0.93802 0.95050 0.93717 0.93921 0.94220 0.91029 0.92691 0.76376 0.81001 0.73928 0.88022 0.88086 0.91550 0.93560 0.91550 0.93484 0.88093 0.89883 0.90072 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.51 71.98 0.61 -4.75 16 2 C -0.12 -5.77 5.45 30.59 0.17 -5.61 16 3 C 0.28 13.78 2.24 44.25 0.10 13.87 16 4 H 0.00 0.24 7.58 -2.39 -0.02 0.22 16 5 C -0.55 -27.73 8.73 25.60 0.22 -27.50 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 0.90 5.29 84.66 0.45 1.35 16 8 N -0.91 -51.01 11.29 21.45 0.24 -50.76 16 9 Si 0.97 40.89 29.54 68.60 2.03 42.91 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 12 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 13 N -0.70 -27.33 4.97 -449.14 -2.23 -29.56 16 14 C 0.56 21.25 6.26 86.74 0.54 21.80 16 15 O -0.57 -24.77 10.46 -3.94 -0.04 -24.81 16 16 C -0.24 -7.57 5.89 -20.00 -0.12 -7.69 16 17 C 0.06 1.47 9.67 22.92 0.22 1.69 16 18 C -0.25 -6.19 6.36 -20.24 -0.13 -6.32 16 19 C 0.11 1.96 12.30 86.94 1.07 3.03 16 20 N -0.25 -5.44 12.20 -53.07 -0.65 -6.09 16 21 N -0.39 -9.15 3.31 -324.44 -1.07 -10.22 16 22 C 0.15 2.72 3.67 44.99 0.16 2.89 16 23 C -0.15 -2.17 9.43 71.98 0.68 -1.49 16 24 C -0.15 -2.14 9.43 71.98 0.68 -1.46 16 25 C 0.31 8.72 7.91 134.19 1.06 9.78 16 26 N -0.53 -15.87 10.25 -180.09 -1.85 -17.71 16 27 C 0.24 7.64 6.82 43.11 0.29 7.93 16 28 C -0.10 -3.01 8.83 71.24 0.63 -2.38 16 29 H 0.03 1.45 7.84 -2.39 -0.02 1.43 16 30 H 0.04 1.86 5.64 -2.39 -0.01 1.84 16 31 H 0.04 1.63 8.14 -2.38 -0.02 1.62 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 3.84 5.95 -2.39 -0.01 3.82 16 34 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 35 H 0.40 12.99 6.67 -92.71 -0.62 12.37 16 36 H 0.17 3.27 6.55 -2.91 -0.02 3.25 16 37 H 0.24 2.04 8.06 -2.91 -0.02 2.01 16 38 H 0.10 1.91 8.03 -2.39 -0.02 1.89 16 39 H 0.10 0.89 8.14 -2.39 -0.02 0.88 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.09 3.17 5.83 -2.39 -0.01 3.16 16 Total: -1.00 -66.84 379.75 3.45 -63.39 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.38 Total: 27.72 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 6.64 Total: 5.14 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -5.56 Total: -114.35 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.04 Total: -24.81 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.91 kcal Total: -66.84 3.45 -63.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183848800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.324 kcal (2) G-P(sol) polarization free energy of solvation -66.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds