Wall clock time and date at job start Tue Mar 31 2020 15:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47273 * 2 1 4 4 H 1.08996 * 109.46791 * 55.00138 * 3 2 1 5 5 C 1.50700 * 109.46794 * 175.00115 * 3 2 1 6 6 H 1.08005 * 119.99843 * 120.00548 * 5 3 2 7 7 C 1.37874 * 120.00275 * 299.99943 * 5 3 2 8 8 N 1.31520 * 119.99788 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00272 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47370 * 89.99876 * 9 7 5 11 11 H 1.48500 * 109.47303 * 210.00431 * 9 7 5 12 12 H 1.48502 * 109.46921 * 329.99707 * 9 7 5 13 13 N 1.46499 * 109.46915 * 295.00227 * 3 2 1 14 14 C 1.34776 * 119.99927 * 85.00333 * 13 3 2 15 15 O 1.21652 * 120.00248 * 359.97438 * 14 13 3 16 16 C 1.47015 * 119.99828 * 179.97438 * 14 13 3 17 17 C 1.41369 * 126.48532 * 0.02562 * 16 14 13 18 18 N 1.30358 * 108.16212 * 179.74792 * 17 16 14 19 19 N 1.39904 * 109.14711 * 0.22625 * 18 17 16 20 20 C 1.46501 * 125.75662 * 179.97438 * 19 18 17 21 21 C 1.34744 * 108.48612 * 0.02562 * 19 18 17 22 22 N 1.38981 * 126.41104 * 179.97438 * 21 19 18 23 23 C 1.36729 * 125.69349 * 269.66490 * 22 21 19 24 24 C 1.50701 * 125.90787 * 0.02562 * 23 22 21 25 25 C 1.34792 * 108.19215 * 179.83092 * 23 22 21 26 26 C 1.41027 * 107.49880 * 0.42574 * 25 23 22 27 27 C 1.34793 * 107.50390 * 359.73523 * 26 25 23 28 28 C 1.50700 * 125.90277 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.46754 * 59.99451 * 1 2 3 30 30 H 1.08998 * 109.47152 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46673 * 299.99809 * 1 2 3 32 32 H 1.08999 * 109.46768 * 239.99759 * 2 1 3 33 33 H 1.09000 * 109.46754 * 120.00549 * 2 1 3 34 34 H 0.97003 * 119.99629 * 179.97438 * 8 7 5 35 35 H 0.96994 * 119.99876 * 264.99666 * 13 3 2 36 36 H 1.08002 * 125.92236 * 0.02562 * 17 16 14 37 37 H 1.09000 * 109.47145 * 90.02877 * 20 19 18 38 38 H 1.09001 * 109.47065 * 210.02643 * 20 19 18 39 39 H 1.08996 * 109.47238 * 330.02004 * 20 19 18 40 40 H 1.09004 * 109.46952 * 89.99266 * 24 23 22 41 41 H 1.08990 * 109.47395 * 210.00163 * 24 23 22 42 42 H 1.09010 * 109.46783 * 330.00239 * 24 23 22 43 43 H 1.07997 * 126.25238 * 180.15991 * 25 23 22 44 44 H 1.08000 * 126.24909 * 179.75334 * 26 25 23 45 45 H 1.09005 * 109.47144 * 269.97091 * 28 27 26 46 46 H 1.08991 * 109.47296 * 29.97577 * 28 27 26 47 47 H 1.08997 * 109.46713 * 149.97757 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1434 0.8782 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8809 1.3817 10 1 6.4419 2.1138 2.0848 11 1 6.4396 -0.3102 2.1547 12 1 6.6136 0.8412 0.0277 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3419 2.6319 -0.4314 16 6 0.0464 3.3222 -2.6229 17 6 0.8358 3.4393 -3.7898 18 7 0.1418 4.0816 -4.6871 19 7 -1.1080 4.4106 -4.1515 20 6 -2.1739 5.1354 -4.8478 21 6 -1.1657 3.9494 -2.8867 22 7 -2.2385 4.0728 -2.0118 23 6 -2.4385 5.1029 -1.1352 24 6 -1.5364 6.2962 -0.9530 25 6 -3.5844 4.8687 -0.4652 26 6 -4.1085 3.6468 -0.9353 27 6 -3.2668 3.1813 -1.8797 28 6 -3.4313 1.9003 -2.6563 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8294 -0.0611 2.9499 35 1 2.2719 2.1231 -1.9977 36 1 1.8383 3.0583 -3.9175 37 1 -2.8199 4.4247 -5.3632 38 1 -2.7608 5.7016 -4.1246 39 1 -1.7340 5.8193 -5.5737 40 1 -1.8473 7.0933 -1.6284 41 1 -1.6011 6.6467 0.0770 42 1 -0.5080 6.0116 -1.1760 43 1 -4.0194 5.4994 0.2960 44 1 -5.0181 3.1709 -0.6001 45 1 -2.9406 1.0863 -2.1226 46 1 -4.4921 1.6755 -2.7659 47 1 -2.9799 2.0126 -3.6420 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183887853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:50 Heat of formation + Delta-G solvation = 90.431259 kcal Electronic energy + Delta-G solvation = -29623.881811 eV Core-core repulsion = 25809.524185 eV Total energy + Delta-G solvation = -3814.357627 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.12421 -40.54402 -38.55835 -34.96041 -33.84658 -32.60845 -32.56570 -32.25762 -30.88736 -29.14165 -28.79063 -27.48340 -26.55458 -24.12695 -23.37214 -22.50375 -21.77479 -20.47776 -20.35998 -19.25664 -18.85900 -17.42483 -16.67844 -15.97502 -15.80879 -15.38091 -15.09279 -14.58746 -14.34215 -14.20235 -14.16739 -13.69368 -13.41069 -13.20805 -13.19308 -12.96465 -12.86420 -12.84106 -12.60992 -12.39471 -12.01769 -11.90944 -11.83220 -11.46079 -11.44736 -11.22306 -11.14055 -10.91726 -10.81644 -10.28399 -10.13292 -9.71062 -9.58424 -9.04646 -8.96993 -8.71525 -8.68730 -8.46049 -7.73826 -7.69806 -6.09402 -4.18566 1.21833 1.78370 2.18190 2.22668 3.00351 3.12489 3.26240 3.33104 3.34612 4.01253 4.05534 4.32586 4.53895 4.71165 4.80541 4.87609 5.05541 5.07376 5.15335 5.22081 5.24484 5.29691 5.36673 5.51511 5.58633 5.63343 5.82320 5.86557 5.92841 5.97783 6.25091 6.33063 6.39017 6.44039 6.45408 6.51907 6.71891 7.09619 7.13654 7.25164 7.26448 7.32151 7.42516 7.51549 7.56865 7.66301 7.79027 7.94945 8.22047 8.73196 8.82623 9.21517 9.49155 10.95905 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015182 B = 0.003817 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.820635 B = 7332.956921 C = 7891.004328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.126 4.126 3 C 0.274 3.726 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.703 5.703 14 C 0.571 3.429 15 O -0.534 6.534 16 C -0.248 4.248 17 C 0.084 3.916 18 N -0.276 5.276 19 N -0.361 5.361 20 C 0.096 3.904 21 C 0.335 3.665 22 N -0.380 5.380 23 C 0.038 3.962 24 C -0.084 4.084 25 C -0.185 4.185 26 C -0.186 4.186 27 C 0.041 3.959 28 C -0.083 4.083 29 H 0.038 0.962 30 H 0.020 0.980 31 H 0.049 0.951 32 H 0.030 0.970 33 H 0.098 0.902 34 H 0.264 0.736 35 H 0.385 0.615 36 H 0.199 0.801 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.492 8.567 -12.698 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.173 3.827 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.356 3.644 15 O -0.412 6.412 16 C -0.265 4.265 17 C -0.103 4.103 18 N -0.098 5.098 19 N -0.144 5.144 20 C -0.045 4.045 21 C 0.114 3.886 22 N -0.059 5.059 23 C -0.069 4.069 24 C -0.141 4.141 25 C -0.209 4.209 26 C -0.210 4.210 27 C -0.067 4.067 28 C -0.140 4.140 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.217 0.783 36 H 0.215 0.785 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.879 8.937 -13.289 20.551 hybrid contribution 1.391 -0.388 0.532 1.539 sum -11.488 8.549 -12.758 19.179 Atomic orbital electron populations 1.21817 0.98318 0.97816 1.01252 1.21928 0.92622 0.99824 1.02159 1.18755 0.94074 0.89081 0.80814 0.93302 1.21230 0.90734 1.38925 1.06263 0.92118 1.24872 0.98483 0.94843 0.95414 1.69903 1.35058 1.37641 1.09308 0.86479 0.85012 0.77609 0.78174 1.20617 1.21118 1.19856 1.46281 1.14142 1.56108 1.18495 1.16979 0.83070 0.79055 0.85325 1.90824 1.51267 1.59840 1.39287 1.20682 0.94592 1.12362 0.98862 1.24068 1.00030 0.96273 0.89894 1.77209 0.90306 1.20633 1.21604 1.48793 1.13366 1.43375 1.08859 1.21962 0.87559 0.96772 0.98248 1.17689 0.89181 0.98252 0.83466 1.40199 1.16962 1.19556 1.29218 1.20318 0.98634 0.91915 0.96033 1.20295 0.97763 0.93054 1.03025 1.20601 0.96927 0.99459 1.03942 1.20590 1.01694 0.98087 1.00671 1.20311 0.89264 0.94031 1.03046 1.20294 1.02615 0.93022 0.98118 0.94327 0.96074 0.93176 0.95127 0.88360 0.92611 0.78266 0.78459 0.90215 0.89406 0.88501 0.91788 0.89814 0.91805 0.84401 0.84412 0.90431 0.90216 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.87 2.24 -69.08 -0.15 6.72 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.94 8.73 -34.44 -0.30 -14.24 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.66 11.30 55.43 0.63 -24.03 16 9 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.70 -14.60 5.01 -56.14 -0.28 -14.88 16 14 C 0.57 11.71 6.37 -12.70 -0.08 11.63 16 15 O -0.53 -12.65 13.42 5.23 0.07 -12.58 16 16 C -0.25 -4.19 6.15 -104.86 -0.64 -4.84 16 17 C 0.08 1.17 11.49 -16.99 -0.20 0.97 16 18 N -0.28 -3.78 12.48 30.86 0.39 -3.40 16 19 N -0.36 -4.69 3.99 -66.66 -0.27 -4.96 16 20 C 0.10 0.83 11.37 59.85 0.68 1.51 16 21 C 0.33 5.17 5.73 -153.05 -0.88 4.29 16 22 N -0.38 -5.89 2.03 -53.86 -0.11 -6.00 16 23 C 0.04 0.58 6.86 -81.63 -0.56 0.02 16 24 C -0.08 -1.08 10.09 36.01 0.36 -0.71 16 25 C -0.18 -2.64 10.76 -39.75 -0.43 -3.06 16 26 C -0.19 -2.65 10.76 -39.75 -0.43 -3.08 16 27 C 0.04 0.61 6.86 -81.63 -0.56 0.05 16 28 C -0.08 -1.05 10.09 36.01 0.36 -0.69 16 29 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.39 6.90 7.49 -40.82 -0.31 6.60 16 36 H 0.20 2.15 7.50 -52.49 -0.39 1.75 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.94 7.83 -51.92 -0.41 0.53 16 43 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 45 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 0.66 7.83 -51.93 -0.41 0.25 16 LS Contribution 388.87 15.07 5.86 5.86 Total: -1.00 -32.43 388.87 -8.58 -41.02 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -7.10 Total: 9.18 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -2.74 Total: -5.71 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.35 Total: -53.28 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.07 Total: -12.58 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.43 -8.58 -41.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183887853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.448 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds