Wall clock time and date at job start Tue Mar 31 2020 15:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47273 * 2 1 4 4 H 1.08996 * 109.46791 * 55.00138 * 3 2 1 5 5 C 1.50700 * 109.46794 * 175.00115 * 3 2 1 6 6 H 1.08005 * 119.99843 * 120.00548 * 5 3 2 7 7 C 1.37874 * 120.00275 * 299.99943 * 5 3 2 8 8 N 1.31520 * 119.99788 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00272 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47370 * 89.99876 * 9 7 5 11 11 H 1.48500 * 109.47303 * 210.00431 * 9 7 5 12 12 H 1.48502 * 109.46921 * 329.99707 * 9 7 5 13 13 N 1.46499 * 109.46915 * 295.00227 * 3 2 1 14 14 C 1.34776 * 119.99927 * 85.00333 * 13 3 2 15 15 O 1.21652 * 120.00248 * 359.97438 * 14 13 3 16 16 C 1.47015 * 119.99828 * 179.97438 * 14 13 3 17 17 C 1.41369 * 126.48532 * 0.02562 * 16 14 13 18 18 N 1.30358 * 108.16212 * 179.74792 * 17 16 14 19 19 N 1.39904 * 109.14711 * 0.22625 * 18 17 16 20 20 C 1.46501 * 125.75662 * 179.97438 * 19 18 17 21 21 C 1.34744 * 108.48612 * 0.02562 * 19 18 17 22 22 N 1.38981 * 126.41104 * 179.97438 * 21 19 18 23 23 C 1.36729 * 125.69349 * 269.66490 * 22 21 19 24 24 C 1.50701 * 125.90787 * 0.02562 * 23 22 21 25 25 C 1.34792 * 108.19215 * 179.83092 * 23 22 21 26 26 C 1.41027 * 107.49880 * 0.42574 * 25 23 22 27 27 C 1.34793 * 107.50390 * 359.73523 * 26 25 23 28 28 C 1.50700 * 125.90277 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.46754 * 59.99451 * 1 2 3 30 30 H 1.08998 * 109.47152 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46673 * 299.99809 * 1 2 3 32 32 H 1.08999 * 109.46768 * 239.99759 * 2 1 3 33 33 H 1.09000 * 109.46754 * 120.00549 * 2 1 3 34 34 H 0.97003 * 119.99629 * 179.97438 * 8 7 5 35 35 H 0.96994 * 119.99876 * 264.99666 * 13 3 2 36 36 H 1.08002 * 125.92236 * 0.02562 * 17 16 14 37 37 H 1.09000 * 109.47145 * 90.02877 * 20 19 18 38 38 H 1.09001 * 109.47065 * 210.02643 * 20 19 18 39 39 H 1.08996 * 109.47238 * 330.02004 * 20 19 18 40 40 H 1.09004 * 109.46952 * 89.99266 * 24 23 22 41 41 H 1.08990 * 109.47395 * 210.00163 * 24 23 22 42 42 H 1.09010 * 109.46783 * 330.00239 * 24 23 22 43 43 H 1.07997 * 126.25238 * 180.15991 * 25 23 22 44 44 H 1.08000 * 126.24909 * 179.75334 * 26 25 23 45 45 H 1.09005 * 109.47144 * 269.97091 * 28 27 26 46 46 H 1.08991 * 109.47296 * 29.97577 * 28 27 26 47 47 H 1.08997 * 109.46713 * 149.97757 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1434 0.8782 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8809 1.3817 10 1 6.4419 2.1138 2.0848 11 1 6.4396 -0.3102 2.1547 12 1 6.6136 0.8412 0.0277 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3419 2.6319 -0.4314 16 6 0.0464 3.3222 -2.6229 17 6 0.8358 3.4393 -3.7898 18 7 0.1418 4.0816 -4.6871 19 7 -1.1080 4.4106 -4.1515 20 6 -2.1739 5.1354 -4.8478 21 6 -1.1657 3.9494 -2.8867 22 7 -2.2385 4.0728 -2.0118 23 6 -2.4385 5.1029 -1.1352 24 6 -1.5364 6.2962 -0.9530 25 6 -3.5844 4.8687 -0.4652 26 6 -4.1085 3.6468 -0.9353 27 6 -3.2668 3.1813 -1.8797 28 6 -3.4313 1.9003 -2.6563 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8294 -0.0611 2.9499 35 1 2.2719 2.1231 -1.9977 36 1 1.8383 3.0583 -3.9175 37 1 -2.8199 4.4247 -5.3632 38 1 -2.7608 5.7016 -4.1246 39 1 -1.7340 5.8193 -5.5737 40 1 -1.8473 7.0933 -1.6284 41 1 -1.6011 6.6467 0.0770 42 1 -0.5080 6.0116 -1.1760 43 1 -4.0194 5.4994 0.2960 44 1 -5.0181 3.1709 -0.6001 45 1 -2.9406 1.0863 -2.1226 46 1 -4.4921 1.6755 -2.7659 47 1 -2.9799 2.0126 -3.6420 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183887853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:49 Heat of formation + Delta-G solvation = 72.133791 kcal Electronic energy + Delta-G solvation = -29624.675249 eV Core-core repulsion = 25809.524185 eV Total energy + Delta-G solvation = -3815.151065 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.23963 -41.64830 -40.22972 -36.84039 -34.92914 -34.14659 -33.73277 -33.61063 -32.70420 -30.17231 -30.06383 -28.95974 -27.92158 -25.17780 -25.14480 -23.99907 -22.87841 -22.04963 -21.44701 -21.02195 -20.14453 -18.88430 -18.03723 -17.41917 -17.14616 -16.85151 -16.49804 -16.12246 -15.93427 -15.58818 -15.20527 -14.81999 -14.72168 -14.60230 -14.38911 -14.20005 -13.97631 -13.89797 -13.69411 -13.60550 -13.41807 -13.36178 -13.15812 -13.06978 -12.86981 -12.85579 -12.67379 -12.50565 -12.26197 -12.13073 -12.02985 -11.56248 -11.02613 -10.74335 -10.69636 -10.48599 -9.96627 -9.79378 -9.51149 -8.80084 -8.12999 -6.29966 0.03272 0.75600 1.00575 1.10506 1.46849 1.47031 1.57611 1.98224 2.03412 2.38602 2.51823 2.68828 3.16752 3.33488 3.66782 3.91227 3.96247 4.01409 4.17750 4.20909 4.29156 4.33100 4.46878 4.50792 4.52580 4.53659 4.58564 4.62161 4.65206 4.80005 4.82006 4.89003 4.96156 5.08237 5.14766 5.25508 5.28734 5.37276 5.40451 5.47026 5.59274 5.66670 5.83040 5.97351 6.05793 6.18184 6.20012 6.22415 6.46910 6.78039 7.05899 7.37109 7.64297 8.92460 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015182 B = 0.003817 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.820635 B = 7332.956921 C = 7891.004328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 C 0.285 3.715 4 H -0.004 1.004 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.259 1.259 13 N -0.699 5.699 14 C 0.573 3.427 15 O -0.573 6.573 16 C -0.282 4.282 17 C 0.093 3.907 18 N -0.276 5.276 19 N -0.350 5.350 20 C 0.086 3.914 21 C 0.338 3.662 22 N -0.387 5.387 23 C 0.017 3.983 24 C -0.079 4.079 25 C -0.194 4.194 26 C -0.194 4.194 27 C 0.020 3.980 28 C -0.077 4.077 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.022 0.978 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.264 0.736 35 H 0.401 0.599 36 H 0.225 0.775 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.039 0.961 43 H 0.157 0.843 44 H 0.157 0.843 45 H 0.056 0.944 46 H 0.108 0.892 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.486 9.303 -14.974 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.158 4.158 3 C 0.182 3.818 4 H 0.014 0.986 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.183 1.183 13 N -0.348 5.348 14 C 0.360 3.640 15 O -0.454 6.454 16 C -0.298 4.298 17 C -0.093 4.093 18 N -0.097 5.097 19 N -0.131 5.131 20 C -0.054 4.054 21 C 0.116 3.884 22 N -0.067 5.067 23 C -0.090 4.090 24 C -0.137 4.137 25 C -0.218 4.218 26 C -0.219 4.219 27 C -0.087 4.087 28 C -0.134 4.134 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.236 0.764 36 H 0.241 0.759 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.138 0.862 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.058 0.942 43 H 0.174 0.826 44 H 0.175 0.825 45 H 0.075 0.925 46 H 0.127 0.873 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.876 9.700 -15.636 22.458 hybrid contribution 1.273 -0.546 1.227 1.851 sum -11.603 9.154 -14.409 20.641 Atomic orbital electron populations 1.21614 0.97110 0.98743 0.99970 1.21773 0.93559 0.99248 1.01209 1.18306 0.93568 0.88943 0.80994 0.98634 1.21576 0.91342 1.38775 1.06702 0.90920 1.25743 1.03149 0.94410 0.95037 1.70061 1.37000 1.38446 1.09850 0.85401 0.79315 0.77309 0.78646 1.20584 1.21081 1.18300 1.45993 1.14943 1.56229 1.17638 1.17384 0.82197 0.78251 0.86154 1.90797 1.52258 1.61239 1.41100 1.20363 0.96453 1.14692 0.98329 1.24412 1.00809 0.95617 0.88490 1.77210 0.90534 1.20571 1.21419 1.49103 1.13764 1.42210 1.08034 1.22363 0.86945 0.97406 0.98652 1.17725 0.88783 0.97611 0.84318 1.40341 1.17000 1.19883 1.29491 1.20764 0.99354 0.92570 0.96331 1.20320 0.95931 0.93198 1.04227 1.20948 0.96927 0.99829 1.04129 1.20949 1.02380 0.98174 1.00352 1.20769 0.89379 0.94728 1.03811 1.20303 1.04339 0.91337 0.97453 0.94116 0.93869 0.95866 0.94069 0.91034 0.92693 0.76449 0.75883 0.88412 0.88903 0.86235 0.89091 0.89079 0.94211 0.82582 0.82501 0.92529 0.87297 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.51 71.98 0.61 -4.83 16 2 C -0.12 -5.94 5.45 30.60 0.17 -5.78 16 3 C 0.29 14.75 2.24 44.25 0.10 14.85 16 4 H 0.00 -0.26 7.58 -2.39 -0.02 -0.28 16 5 C -0.55 -28.79 8.73 25.60 0.22 -28.57 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.92 -52.59 11.30 21.45 0.24 -52.35 16 9 Si 0.97 42.03 29.54 68.60 2.03 44.06 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 13 N -0.70 -29.49 5.01 -449.77 -2.25 -31.74 16 14 C 0.57 24.03 6.37 86.54 0.55 24.58 16 15 O -0.57 -28.31 13.42 -4.19 -0.06 -28.37 16 16 C -0.28 -9.41 6.15 -20.02 -0.12 -9.53 16 17 C 0.09 2.44 11.49 85.68 0.98 3.42 16 18 N -0.28 -6.95 12.48 -56.27 -0.70 -7.65 16 19 N -0.35 -8.40 3.99 -364.80 -1.46 -9.85 16 20 C 0.09 1.25 11.37 127.77 1.45 2.70 16 21 C 0.34 10.20 5.73 132.33 0.76 10.95 16 22 N -0.39 -11.86 2.03 -324.31 -0.66 -12.51 16 23 C 0.02 0.50 6.86 41.00 0.28 0.79 16 24 C -0.08 -2.00 10.09 71.24 0.72 -1.28 16 25 C -0.19 -5.41 10.76 22.16 0.24 -5.17 16 26 C -0.19 -5.39 10.76 22.16 0.24 -5.15 16 27 C 0.02 0.60 6.86 41.00 0.28 0.88 16 28 C -0.08 -1.89 10.09 71.24 0.72 -1.17 16 29 H 0.04 1.85 5.64 -2.39 -0.01 1.84 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.02 1.16 7.84 -2.38 -0.02 1.14 16 32 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 3.99 5.95 -2.39 -0.01 3.98 16 34 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 35 H 0.40 14.16 7.49 -92.71 -0.69 13.46 16 36 H 0.22 4.35 7.50 -2.91 -0.02 4.32 16 37 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.31 8.07 -2.39 -0.02 1.29 16 39 H 0.12 1.23 8.14 -2.39 -0.02 1.22 16 40 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.04 1.18 7.83 -2.38 -0.02 1.16 16 43 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 44 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 45 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 46 H 0.11 1.94 8.14 -2.39 -0.02 1.93 16 47 H 0.05 1.30 7.83 -2.39 -0.02 1.28 16 Total: -1.00 -72.49 388.87 5.08 -67.41 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: 0.29 Total: 32.99 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 7.65 Total: -1.98 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -4.83 Total: -114.11 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.06 Total: -28.37 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -72.49 5.08 -67.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183887853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.541 kcal (2) G-P(sol) polarization free energy of solvation -72.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds