Wall clock time and date at job start Tue Mar 31 2020 15:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46943 * 2 1 4 4 H 1.09007 * 109.46615 * 304.99762 * 3 2 1 5 5 C 1.50696 * 109.46996 * 185.00094 * 3 2 1 6 6 H 1.08000 * 119.99925 * 239.99847 * 5 3 2 7 7 C 1.37873 * 120.00616 * 59.99875 * 5 3 2 8 8 N 1.31521 * 119.99448 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00491 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46962 * 89.99654 * 9 7 5 11 11 H 1.48494 * 109.47379 * 209.99874 * 9 7 5 12 12 H 1.48500 * 109.47070 * 330.00219 * 9 7 5 13 13 N 1.46499 * 109.47277 * 64.99678 * 3 2 1 14 14 C 1.34784 * 119.99971 * 275.00026 * 13 3 2 15 15 O 1.21650 * 119.99709 * 359.72688 * 14 13 3 16 16 C 1.47010 * 119.99902 * 179.97438 * 14 13 3 17 17 C 1.41366 * 126.48708 * 359.68993 * 16 14 13 18 18 N 1.30360 * 108.16812 * 179.81343 * 17 16 14 19 19 N 1.39902 * 109.14075 * 0.44989 * 18 17 16 20 20 C 1.46507 * 125.75802 * 179.68670 * 19 18 17 21 21 C 1.34745 * 108.48851 * 359.71038 * 19 18 17 22 22 N 1.38981 * 126.41264 * 179.97438 * 21 19 18 23 23 C 1.36729 * 125.69559 * 269.68998 * 22 21 19 24 24 C 1.50705 * 125.90262 * 359.97438 * 23 22 21 25 25 C 1.34788 * 108.19085 * 179.83256 * 23 22 21 26 26 C 1.41018 * 107.50012 * 0.42478 * 25 23 22 27 27 C 1.34782 * 107.50537 * 359.73682 * 26 25 23 28 28 C 1.50706 * 125.90509 * 180.02562 * 27 26 25 29 29 H 1.08997 * 109.46807 * 60.00628 * 1 2 3 30 30 H 1.08998 * 109.46840 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47264 * 300.00242 * 1 2 3 32 32 H 1.09000 * 109.47264 * 239.99758 * 2 1 3 33 33 H 1.08997 * 109.46807 * 119.99372 * 2 1 3 34 34 H 0.97001 * 119.99446 * 180.02562 * 8 7 5 35 35 H 0.96999 * 119.99984 * 94.99874 * 13 3 2 36 36 H 1.08008 * 125.92087 * 359.95980 * 17 16 14 37 37 H 1.08994 * 109.47395 * 270.02303 * 20 19 18 38 38 H 1.08997 * 109.46450 * 30.02884 * 20 19 18 39 39 H 1.08997 * 109.46776 * 150.02633 * 20 19 18 40 40 H 1.09006 * 109.47330 * 89.99771 * 24 23 22 41 41 H 1.09009 * 109.46923 * 209.99417 * 24 23 22 42 42 H 1.08998 * 109.47114 * 329.99598 * 24 23 22 43 43 H 1.08006 * 126.24929 * 180.20433 * 25 23 22 44 44 H 1.08010 * 126.24699 * 179.76827 * 26 25 23 45 45 H 1.09006 * 109.46714 * 269.95665 * 28 27 26 46 46 H 1.08991 * 109.47378 * 29.95692 * 28 27 26 47 47 H 1.08995 * 109.47099 * 149.96132 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1434 0.8785 -1.2279 8 7 3.4062 0.3375 -2.1733 9 14 6.0050 0.8801 -1.3810 10 1 6.5539 -0.3519 -0.7596 11 1 6.3836 0.9215 -2.8163 12 1 6.5576 2.0720 -0.6888 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6645 1.3668 15 8 -0.3400 2.6365 0.4295 16 6 0.0458 3.3213 2.6231 17 6 0.8327 3.4327 3.7923 18 7 0.1427 4.0843 4.6860 19 7 -1.1078 4.4118 4.1509 20 6 -2.1727 5.1391 4.8463 21 6 -1.1678 3.9451 2.8883 22 7 -2.2422 4.0645 2.0148 23 6 -3.2673 3.1693 1.8839 24 6 -3.4252 1.8869 2.6597 25 6 -4.1139 3.6335 0.9434 26 6 -3.5913 4.8538 0.4676 27 6 -2.4474 5.0941 1.1387 28 6 -1.5500 6.2909 0.9556 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.8294 -0.0609 -2.9499 35 1 2.2719 2.1232 1.9977 36 1 1.8332 3.0470 3.9219 37 1 -2.8177 4.4302 5.3655 38 1 -1.7316 5.8258 5.5688 39 1 -2.7609 5.7023 4.1218 40 1 -3.9942 2.0801 3.5692 41 1 -3.9541 1.1554 2.0487 42 1 -2.4415 1.4977 2.9223 43 1 -5.0242 3.1561 0.6119 44 1 -4.0282 5.4816 -0.2950 45 1 -0.8040 6.0721 0.1915 46 1 -2.1468 7.1485 0.6455 47 1 -1.0499 6.5175 1.8971 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183887870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:53 Heat of formation + Delta-G solvation = 90.446120 kcal Electronic energy + Delta-G solvation = -29623.967771 eV Core-core repulsion = 25809.610789 eV Total energy + Delta-G solvation = -3814.356982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.12468 -40.54482 -38.55708 -34.96094 -33.84642 -32.61024 -32.56317 -32.25719 -30.88578 -29.14072 -28.79148 -27.48363 -26.55419 -24.12699 -23.37223 -22.50268 -21.77480 -20.47690 -20.35962 -19.25668 -18.85837 -17.42490 -16.67824 -15.97656 -15.80766 -15.37779 -15.09299 -14.58591 -14.33934 -14.20351 -14.16484 -13.69432 -13.41687 -13.20359 -13.18305 -12.97264 -12.87303 -12.83244 -12.61237 -12.39425 -12.01438 -11.90989 -11.83419 -11.45712 -11.45153 -11.21737 -11.14293 -10.94444 -10.78883 -10.28320 -10.13165 -9.70991 -9.59181 -9.04636 -8.96186 -8.71752 -8.68617 -8.46547 -7.73689 -7.69841 -6.09376 -4.18537 1.21848 1.78362 2.18169 2.22725 3.00436 3.12540 3.25921 3.33078 3.35015 4.01150 4.05672 4.32613 4.53779 4.71337 4.80543 4.87496 5.05554 5.07566 5.15267 5.22078 5.24657 5.30262 5.36027 5.51199 5.58622 5.63743 5.82202 5.86540 5.92423 5.98384 6.25093 6.33074 6.39020 6.44204 6.45370 6.51878 6.72035 7.09634 7.13685 7.25240 7.26442 7.32157 7.42537 7.51605 7.56870 7.66378 7.79011 7.95016 8.22100 8.73184 8.82672 9.21541 9.49178 10.95932 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.003818 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.199377 B = 7332.219313 C = 7892.497140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.274 3.726 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.703 5.703 14 C 0.571 3.429 15 O -0.534 6.534 16 C -0.248 4.248 17 C 0.084 3.916 18 N -0.276 5.276 19 N -0.361 5.361 20 C 0.096 3.904 21 C 0.335 3.665 22 N -0.380 5.380 23 C 0.040 3.960 24 C -0.083 4.083 25 C -0.186 4.186 26 C -0.186 4.186 27 C 0.039 3.961 28 C -0.084 4.084 29 H 0.049 0.951 30 H 0.020 0.980 31 H 0.037 0.963 32 H 0.098 0.902 33 H 0.030 0.970 34 H 0.264 0.736 35 H 0.385 0.615 36 H 0.199 0.801 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.499 8.561 12.696 19.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.173 3.827 4 H 0.067 0.933 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.356 3.644 15 O -0.412 6.412 16 C -0.265 4.265 17 C -0.103 4.103 18 N -0.097 5.097 19 N -0.144 5.144 20 C -0.046 4.046 21 C 0.114 3.886 22 N -0.059 5.059 23 C -0.067 4.067 24 C -0.141 4.141 25 C -0.210 4.210 26 C -0.210 4.210 27 C -0.068 4.068 28 C -0.141 4.141 29 H 0.068 0.932 30 H 0.039 0.961 31 H 0.057 0.943 32 H 0.116 0.884 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.217 0.783 36 H 0.215 0.785 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.881 8.952 13.279 20.552 hybrid contribution 1.387 -0.416 -0.517 1.538 sum -11.494 8.536 12.762 19.179 Atomic orbital electron populations 1.21811 0.98301 0.97825 1.01244 1.21932 0.92628 0.99828 1.02159 1.18756 0.94073 0.89072 0.80823 0.93290 1.21228 0.90733 1.38935 1.06250 0.92119 1.24872 0.98484 0.94870 0.95392 1.69904 1.35046 1.37622 1.09339 0.86478 0.85032 0.78412 0.77355 1.20580 1.21121 1.19881 1.46284 1.14114 1.56138 1.18495 1.16979 0.83061 0.79024 0.85356 1.90824 1.51400 1.59823 1.39177 1.20680 0.94544 1.12513 0.98759 1.24068 1.00079 0.96221 0.89903 1.77210 0.90411 1.20447 1.21681 1.48794 1.13301 1.43260 1.09038 1.21963 0.87596 0.96730 0.98261 1.17689 0.89083 0.98355 0.83462 1.40198 1.16998 1.19479 1.29263 1.20302 0.89232 0.94018 1.03160 1.20289 1.02508 0.92515 0.98763 1.20595 1.01476 0.98208 1.00700 1.20590 0.97022 0.99604 1.03776 1.20326 0.98652 0.91957 0.95905 1.20302 0.98275 0.93378 1.02151 0.93174 0.96071 0.94350 0.88356 0.95134 0.92613 0.78270 0.78460 0.90205 0.88505 0.89399 0.91797 0.89848 0.91869 0.84413 0.84400 0.90382 0.90198 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.52 37.16 0.32 -2.74 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.87 2.24 -69.08 -0.15 6.72 16 4 H 0.05 1.44 7.57 -51.93 -0.39 1.04 16 5 C -0.53 -13.94 8.73 -34.44 -0.30 -14.24 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.66 11.30 55.43 0.63 -24.03 16 9 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 13 N -0.70 -14.61 5.01 -56.14 -0.28 -14.89 16 14 C 0.57 11.72 6.36 -12.70 -0.08 11.64 16 15 O -0.53 -12.66 13.44 5.23 0.07 -12.59 16 16 C -0.25 -4.19 6.15 -104.87 -0.64 -4.84 16 17 C 0.08 1.17 11.49 -16.99 -0.20 0.97 16 18 N -0.28 -3.78 12.48 30.86 0.39 -3.40 16 19 N -0.36 -4.69 3.99 -66.65 -0.27 -4.96 16 20 C 0.10 0.83 11.37 59.85 0.68 1.51 16 21 C 0.33 5.17 5.73 -153.05 -0.88 4.29 16 22 N -0.38 -5.89 2.03 -53.86 -0.11 -6.00 16 23 C 0.04 0.60 6.86 -81.63 -0.56 0.04 16 24 C -0.08 -1.06 10.09 36.01 0.36 -0.70 16 25 C -0.19 -2.64 10.76 -39.75 -0.43 -3.07 16 26 C -0.19 -2.65 10.76 -39.75 -0.43 -3.07 16 27 C 0.04 0.59 6.86 -81.63 -0.56 0.03 16 28 C -0.08 -1.07 10.09 36.01 0.36 -0.71 16 29 H 0.05 1.22 7.85 -51.93 -0.41 0.82 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.85 5.65 -51.93 -0.29 0.56 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.39 6.90 7.49 -40.82 -0.31 6.59 16 36 H 0.20 2.14 7.50 -52.48 -0.39 1.75 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.97 8.14 -51.92 -0.42 0.54 16 42 H 0.06 0.92 7.83 -51.93 -0.41 0.51 16 43 H 0.14 1.65 8.06 -52.48 -0.42 1.22 16 44 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.05 0.67 7.83 -51.93 -0.41 0.26 16 LS Contribution 388.89 15.07 5.86 5.86 Total: -1.00 -32.45 388.89 -8.58 -41.03 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -7.10 Total: 9.18 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -2.74 Total: -5.71 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.35 Total: -53.28 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.07 Total: -12.59 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.45 -8.58 -41.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183887870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.479 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds