Wall clock time and date at job start Tue Mar 31 2020 15:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46943 * 2 1 4 4 H 1.09007 * 109.46615 * 304.99762 * 3 2 1 5 5 C 1.50696 * 109.46996 * 185.00094 * 3 2 1 6 6 H 1.08000 * 119.99925 * 239.99847 * 5 3 2 7 7 C 1.37873 * 120.00616 * 59.99875 * 5 3 2 8 8 N 1.31521 * 119.99448 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00491 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46962 * 89.99654 * 9 7 5 11 11 H 1.48494 * 109.47379 * 209.99874 * 9 7 5 12 12 H 1.48500 * 109.47070 * 330.00219 * 9 7 5 13 13 N 1.46499 * 109.47277 * 64.99678 * 3 2 1 14 14 C 1.34784 * 119.99971 * 275.00026 * 13 3 2 15 15 O 1.21650 * 119.99709 * 359.72688 * 14 13 3 16 16 C 1.47010 * 119.99902 * 179.97438 * 14 13 3 17 17 C 1.41366 * 126.48708 * 359.68993 * 16 14 13 18 18 N 1.30360 * 108.16812 * 179.81343 * 17 16 14 19 19 N 1.39902 * 109.14075 * 0.44989 * 18 17 16 20 20 C 1.46507 * 125.75802 * 179.68670 * 19 18 17 21 21 C 1.34745 * 108.48851 * 359.71038 * 19 18 17 22 22 N 1.38981 * 126.41264 * 179.97438 * 21 19 18 23 23 C 1.36729 * 125.69559 * 269.68998 * 22 21 19 24 24 C 1.50705 * 125.90262 * 359.97438 * 23 22 21 25 25 C 1.34788 * 108.19085 * 179.83256 * 23 22 21 26 26 C 1.41018 * 107.50012 * 0.42478 * 25 23 22 27 27 C 1.34782 * 107.50537 * 359.73682 * 26 25 23 28 28 C 1.50706 * 125.90509 * 180.02562 * 27 26 25 29 29 H 1.08997 * 109.46807 * 60.00628 * 1 2 3 30 30 H 1.08998 * 109.46840 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47264 * 300.00242 * 1 2 3 32 32 H 1.09000 * 109.47264 * 239.99758 * 2 1 3 33 33 H 1.08997 * 109.46807 * 119.99372 * 2 1 3 34 34 H 0.97001 * 119.99446 * 180.02562 * 8 7 5 35 35 H 0.96999 * 119.99984 * 94.99874 * 13 3 2 36 36 H 1.08008 * 125.92087 * 359.95980 * 17 16 14 37 37 H 1.08994 * 109.47395 * 270.02303 * 20 19 18 38 38 H 1.08997 * 109.46450 * 30.02884 * 20 19 18 39 39 H 1.08997 * 109.46776 * 150.02633 * 20 19 18 40 40 H 1.09006 * 109.47330 * 89.99771 * 24 23 22 41 41 H 1.09009 * 109.46923 * 209.99417 * 24 23 22 42 42 H 1.08998 * 109.47114 * 329.99598 * 24 23 22 43 43 H 1.08006 * 126.24929 * 180.20433 * 25 23 22 44 44 H 1.08010 * 126.24699 * 179.76827 * 26 25 23 45 45 H 1.09006 * 109.46714 * 269.95665 * 28 27 26 46 46 H 1.08991 * 109.47378 * 29.95692 * 28 27 26 47 47 H 1.08995 * 109.47099 * 149.96132 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1434 0.8785 -1.2279 8 7 3.4062 0.3375 -2.1733 9 14 6.0050 0.8801 -1.3810 10 1 6.5539 -0.3519 -0.7596 11 1 6.3836 0.9215 -2.8163 12 1 6.5576 2.0720 -0.6888 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6645 1.3668 15 8 -0.3400 2.6365 0.4295 16 6 0.0458 3.3213 2.6231 17 6 0.8327 3.4327 3.7923 18 7 0.1427 4.0843 4.6860 19 7 -1.1078 4.4118 4.1509 20 6 -2.1727 5.1391 4.8463 21 6 -1.1678 3.9451 2.8883 22 7 -2.2422 4.0645 2.0148 23 6 -3.2673 3.1693 1.8839 24 6 -3.4252 1.8869 2.6597 25 6 -4.1139 3.6335 0.9434 26 6 -3.5913 4.8538 0.4676 27 6 -2.4474 5.0941 1.1387 28 6 -1.5500 6.2909 0.9556 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.8294 -0.0609 -2.9499 35 1 2.2719 2.1232 1.9977 36 1 1.8332 3.0470 3.9219 37 1 -2.8177 4.4302 5.3655 38 1 -1.7316 5.8258 5.5688 39 1 -2.7609 5.7023 4.1218 40 1 -3.9942 2.0801 3.5692 41 1 -3.9541 1.1554 2.0487 42 1 -2.4415 1.4977 2.9223 43 1 -5.0242 3.1561 0.6119 44 1 -4.0282 5.4816 -0.2950 45 1 -0.8040 6.0721 0.1915 46 1 -2.1468 7.1485 0.6455 47 1 -1.0499 6.5175 1.8971 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183887870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:52 Heat of formation + Delta-G solvation = 72.133178 kcal Electronic energy + Delta-G solvation = -29624.761880 eV Core-core repulsion = 25809.610789 eV Total energy + Delta-G solvation = -3815.151091 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.24030 -41.64927 -40.22890 -36.84149 -34.92913 -34.14703 -33.73301 -33.60981 -32.70338 -30.17101 -30.06569 -28.96013 -27.92159 -25.17841 -25.14467 -23.99871 -22.87863 -22.04946 -21.44675 -21.02239 -20.14429 -18.88485 -18.03694 -17.42012 -17.14894 -16.84588 -16.50157 -16.12160 -15.93130 -15.58431 -15.20465 -14.81879 -14.72778 -14.59699 -14.39637 -14.20026 -13.98203 -13.89483 -13.69360 -13.60417 -13.41339 -13.36715 -13.15530 -13.06418 -12.88228 -12.86768 -12.64390 -12.50528 -12.26597 -12.13648 -12.03305 -11.57323 -11.02062 -10.74287 -10.69545 -10.48768 -9.96760 -9.79383 -9.51116 -8.80136 -8.13026 -6.29991 0.03254 0.75569 1.00528 1.10513 1.46626 1.47283 1.57510 1.98283 2.03456 2.38580 2.51865 2.68774 3.16674 3.33369 3.66876 3.91198 3.96023 4.01352 4.17822 4.20663 4.29676 4.33488 4.46881 4.51020 4.52547 4.53425 4.58806 4.61829 4.65154 4.80010 4.81888 4.88948 4.96272 5.08019 5.14712 5.25522 5.28650 5.37286 5.40421 5.46931 5.59260 5.66675 5.83006 5.97363 6.05816 6.18192 6.20010 6.22380 6.46906 6.78017 7.05854 7.37095 7.64278 8.92429 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.003818 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.199377 B = 7332.219313 C = 7892.497140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 C 0.285 3.715 4 H -0.004 1.004 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.699 5.699 14 C 0.573 3.427 15 O -0.573 6.573 16 C -0.282 4.282 17 C 0.093 3.907 18 N -0.276 5.276 19 N -0.350 5.350 20 C 0.085 3.915 21 C 0.338 3.662 22 N -0.387 5.387 23 C 0.021 3.979 24 C -0.079 4.079 25 C -0.195 4.195 26 C -0.193 4.193 27 C 0.016 3.984 28 C -0.077 4.077 29 H 0.022 0.978 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.401 0.599 36 H 0.225 0.775 37 H 0.098 0.902 38 H 0.119 0.881 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.040 0.960 43 H 0.157 0.843 44 H 0.157 0.843 45 H 0.054 0.946 46 H 0.109 0.891 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.519 9.252 14.977 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.158 4.158 3 C 0.182 3.818 4 H 0.014 0.986 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.348 5.348 14 C 0.360 3.640 15 O -0.454 6.454 16 C -0.298 4.298 17 C -0.093 4.093 18 N -0.097 5.097 19 N -0.131 5.131 20 C -0.054 4.054 21 C 0.116 3.884 22 N -0.067 5.067 23 C -0.086 4.086 24 C -0.136 4.136 25 C -0.219 4.219 26 C -0.217 4.217 27 C -0.091 4.091 28 C -0.135 4.135 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.235 0.765 36 H 0.241 0.759 37 H 0.116 0.884 38 H 0.137 0.863 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.059 0.941 43 H 0.175 0.825 44 H 0.175 0.825 45 H 0.072 0.928 46 H 0.128 0.872 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.904 9.669 15.629 22.456 hybrid contribution 1.274 -0.573 -1.208 1.846 sum -11.630 9.096 14.421 20.639 Atomic orbital electron populations 1.21608 0.97096 0.98755 0.99958 1.21776 0.93568 0.99251 1.01207 1.18306 0.93563 0.88937 0.81004 0.98616 1.21572 0.91344 1.38804 1.06686 0.90944 1.25743 1.03153 0.94432 0.95011 1.70062 1.36986 1.38426 1.09877 0.85395 0.79301 0.78874 0.77063 1.19664 1.21432 1.18888 1.45996 1.14919 1.56258 1.17640 1.17383 0.82188 0.78215 0.86188 1.90796 1.52392 1.61221 1.40994 1.20360 0.96413 1.14836 0.98231 1.24412 1.00851 0.95576 0.88495 1.77211 0.90639 1.20386 1.21494 1.49106 1.13700 1.42095 1.08208 1.22365 0.86989 0.97368 0.98655 1.17725 0.88685 0.97716 0.84312 1.40341 1.17043 1.19778 1.29557 1.20771 0.89351 0.94670 1.03817 1.20322 1.01699 0.91729 0.99870 1.20944 1.02203 0.98360 1.00429 1.20950 0.96954 0.99955 1.03887 1.20761 0.99382 0.92619 0.96336 1.20300 0.97884 0.93818 1.01469 0.95856 0.93856 0.94148 0.91024 0.94084 0.92693 0.76450 0.75882 0.88350 0.86255 0.88928 0.89153 0.89012 0.94057 0.82530 0.82546 0.92767 0.87246 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.52 71.98 0.61 -4.82 16 2 C -0.12 -5.95 5.45 30.60 0.17 -5.78 16 3 C 0.29 14.75 2.24 44.24 0.10 14.85 16 4 H 0.00 -0.25 7.57 -2.38 -0.02 -0.27 16 5 C -0.55 -28.82 8.73 25.60 0.22 -28.59 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.02 0.90 5.29 84.65 0.45 1.34 16 8 N -0.92 -52.58 11.30 21.45 0.24 -52.34 16 9 Si 0.97 42.05 29.54 68.60 2.03 44.08 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 13 N -0.70 -29.51 5.01 -449.76 -2.25 -31.77 16 14 C 0.57 24.04 6.36 86.54 0.55 24.59 16 15 O -0.57 -28.33 13.44 -4.19 -0.06 -28.39 16 16 C -0.28 -9.42 6.15 -20.02 -0.12 -9.54 16 17 C 0.09 2.43 11.49 85.68 0.98 3.42 16 18 N -0.28 -6.95 12.48 -56.26 -0.70 -7.65 16 19 N -0.35 -8.40 3.99 -364.79 -1.46 -9.85 16 20 C 0.09 1.25 11.37 127.77 1.45 2.70 16 21 C 0.34 10.20 5.73 132.33 0.76 10.96 16 22 N -0.39 -11.86 2.03 -324.32 -0.66 -12.52 16 23 C 0.02 0.62 6.86 41.00 0.28 0.90 16 24 C -0.08 -1.93 10.09 71.24 0.72 -1.21 16 25 C -0.20 -5.41 10.76 22.16 0.24 -5.17 16 26 C -0.19 -5.39 10.76 22.16 0.24 -5.15 16 27 C 0.02 0.48 6.86 41.00 0.28 0.76 16 28 C -0.08 -1.96 10.09 71.24 0.72 -1.24 16 29 H 0.02 1.16 7.85 -2.39 -0.02 1.15 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 1.84 5.65 -2.39 -0.01 1.82 16 32 H 0.07 4.00 5.95 -2.39 -0.01 3.98 16 33 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 35 H 0.40 14.16 7.49 -92.71 -0.69 13.47 16 36 H 0.22 4.35 7.50 -2.91 -0.02 4.32 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.32 8.07 -2.39 -0.02 1.30 16 40 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 42 H 0.04 1.18 7.83 -2.39 -0.02 1.16 16 43 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 44 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 45 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 46 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.05 1.34 7.83 -2.39 -0.02 1.33 16 Total: -1.00 -72.52 388.89 5.08 -67.44 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.29 Total: 32.97 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 7.65 Total: -1.98 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -4.83 Total: -114.13 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.06 Total: -28.39 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -72.52 5.08 -67.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183887870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.574 kcal (2) G-P(sol) polarization free energy of solvation -72.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds