Wall clock time and date at job start Tue Mar 31 2020 15:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47221 * 60.00660 * 9 7 5 11 11 H 1.48504 * 109.46710 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47441 * 300.00053 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21543 * 120.00296 * 359.72071 * 14 13 3 16 16 C 1.47869 * 119.99621 * 179.72373 * 14 13 3 17 17 C 1.39334 * 121.09122 * 359.97438 * 16 14 13 18 18 C 1.38655 * 119.36291 * 180.02562 * 17 16 14 19 19 C 1.50703 * 119.16063 * 179.97438 * 18 17 16 20 20 N 1.31475 * 121.67323 * 359.97438 * 18 17 16 21 21 C 1.32519 * 121.97535 * 0.02562 * 20 18 17 22 22 C 1.40963 * 120.21250 * 359.73055 * 21 20 18 23 23 C 1.41110 * 107.12814 * 180.36115 * 22 21 20 24 24 N 1.30239 * 108.58643 * 0.21906 * 23 22 21 25 25 N 1.37072 * 133.44858 * 179.97438 * 21 20 18 26 26 C 1.46508 * 125.90510 * 359.97438 * 25 21 20 27 27 C 1.52994 * 109.47103 * 119.99820 * 26 25 21 28 28 C 1.53003 * 109.46774 * 239.99734 * 26 25 21 29 29 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 31 31 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 32 32 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 33 33 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 34 34 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 36 36 H 1.07998 * 120.31662 * 0.02562 * 17 16 14 37 37 H 1.09003 * 109.46909 * 90.00044 * 19 18 17 38 38 H 1.08995 * 109.47000 * 209.99331 * 19 18 17 39 39 H 1.08991 * 109.47199 * 330.00132 * 19 18 17 40 40 H 1.08003 * 125.70413 * 180.25405 * 23 22 21 41 41 H 1.08994 * 109.47058 * 359.97438 * 26 25 21 42 42 H 1.09004 * 109.47638 * 59.99842 * 27 26 25 43 43 H 1.09004 * 109.47081 * 179.97438 * 27 26 25 44 44 H 1.09001 * 109.47096 * 299.99576 * 27 26 25 45 45 H 1.09004 * 109.46936 * 180.02562 * 28 26 25 46 46 H 1.09004 * 109.46980 * 299.99553 * 28 26 25 47 47 H 1.08995 * 109.47468 * 59.99677 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3822 11 1 6.3978 0.2166 2.6503 12 1 6.5975 0.1473 0.2349 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3391 2.6371 -0.4302 16 6 0.0483 3.3358 -2.6263 17 6 0.9203 3.3865 -3.7118 18 6 0.5189 4.0212 -4.8774 19 6 1.4659 4.0739 -6.0484 20 7 -0.6670 4.5782 -4.9868 21 6 -1.5429 4.5652 -3.9924 22 6 -1.2213 3.9374 -2.7720 23 6 -2.3402 4.0793 -1.9241 24 7 -3.2676 4.7306 -2.5660 25 7 -2.8133 5.0594 -3.8488 26 6 -3.5709 5.7911 -4.8672 27 6 -4.8571 5.0289 -5.1917 28 6 -3.9226 7.1833 -4.3389 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8293 -0.0619 2.9495 35 1 2.2719 2.1232 -1.9977 36 1 1.8995 2.9357 -3.6460 37 1 1.3102 3.2001 -6.6812 38 1 1.2790 4.9789 -6.6264 39 1 2.4934 4.0806 -5.6848 40 1 -2.4149 3.7102 -0.9118 41 1 -2.9674 5.8871 -5.7697 42 1 -5.4605 4.9332 -4.2890 43 1 -5.4210 5.5735 -5.9491 44 1 -4.6065 4.0370 -5.5681 45 1 -4.4866 7.7276 -5.0965 46 1 -4.5259 7.0877 -3.4362 47 1 -3.0063 7.7264 -4.1076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183919345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:38 Heat of formation + Delta-G solvation = 37.400684 kcal Electronic energy + Delta-G solvation = -28479.008592 eV Core-core repulsion = 24662.351387 eV Total energy + Delta-G solvation = -3816.657205 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.92433 -40.75800 -39.41304 -37.05682 -36.57742 -34.57940 -33.85820 -32.90282 -32.51174 -30.74733 -29.03894 -28.32457 -28.24478 -25.81165 -24.78114 -23.96147 -23.40476 -22.22488 -21.31553 -20.75500 -19.10891 -18.62350 -18.06214 -17.66810 -17.06872 -16.86342 -16.21942 -16.11650 -16.03373 -15.59724 -15.17859 -14.92362 -14.84984 -14.60485 -14.54975 -14.02211 -13.87721 -13.63512 -13.43446 -13.18168 -13.17215 -13.13567 -13.03656 -12.88531 -12.72108 -12.62958 -12.47207 -12.43409 -12.18092 -12.05776 -11.81310 -11.61802 -11.48824 -11.21037 -11.03664 -10.53408 -10.45406 -9.89536 -9.68513 -9.40499 -8.13462 -6.30630 -0.73784 0.05532 1.05925 1.30768 1.48467 1.49757 1.57269 1.94037 2.25118 2.49876 2.74117 2.98208 3.16574 3.29500 3.53363 3.68141 3.70805 3.90497 3.92373 4.06994 4.21102 4.35744 4.42809 4.51875 4.58620 4.63197 4.63575 4.73539 4.76512 4.76819 4.82770 4.88464 4.95066 5.02967 5.09997 5.14890 5.17373 5.27883 5.32975 5.44525 5.47149 5.54058 5.61768 5.80625 5.84449 5.91984 6.17874 6.32005 6.75419 6.77328 6.89043 7.32128 7.47921 8.91685 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018699 B = 0.003011 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.048983 B = 9296.776953 C =10156.653159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C 0.280 3.720 4 H 0.003 0.997 5 C -0.548 4.548 6 H 0.075 0.925 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.688 5.688 14 C 0.541 3.459 15 O -0.564 6.564 16 C -0.012 4.012 17 C -0.172 4.172 18 C 0.198 3.802 19 C -0.101 4.101 20 N -0.499 5.499 21 C 0.298 3.702 22 C -0.213 4.213 23 C 0.084 3.916 24 N -0.249 5.249 25 N -0.382 5.382 26 C 0.155 3.845 27 C -0.154 4.154 28 C -0.154 4.154 29 H 0.044 0.956 30 H 0.029 0.971 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.265 0.735 35 H 0.405 0.595 36 H 0.173 0.827 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.198 0.802 41 H 0.114 0.886 42 H 0.058 0.942 43 H 0.106 0.894 44 H 0.048 0.952 45 H 0.107 0.893 46 H 0.058 0.942 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.846 9.206 -19.728 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.021 0.979 5 C -0.586 4.586 6 H 0.093 0.907 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.187 1.187 13 N -0.338 5.338 14 C 0.327 3.673 15 O -0.445 6.445 16 C -0.026 4.026 17 C -0.194 4.194 18 C 0.047 3.953 19 C -0.158 4.158 20 N -0.216 5.216 21 C 0.058 3.942 22 C -0.224 4.224 23 C -0.111 4.111 24 N -0.063 5.063 25 N -0.174 5.174 26 C 0.056 3.944 27 C -0.211 4.211 28 C -0.212 4.212 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.241 0.759 36 H 0.190 0.810 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.124 0.876 40 H 0.214 0.786 41 H 0.132 0.868 42 H 0.077 0.923 43 H 0.125 0.875 44 H 0.067 0.933 45 H 0.125 0.875 46 H 0.077 0.923 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.999 10.092 -19.666 24.261 hybrid contribution 1.909 -0.937 1.411 2.552 sum -8.090 9.155 -18.255 21.966 Atomic orbital electron populations 1.21687 0.97122 0.99153 1.00236 1.21791 0.93596 0.99048 1.01518 1.18445 0.93843 0.89174 0.80851 0.97873 1.21540 0.91213 1.39046 1.06834 0.90654 1.25734 1.03139 0.94387 0.95039 1.70036 1.37109 1.38247 1.09868 0.85456 0.79296 0.78415 0.77529 1.19711 1.21521 1.18730 1.46173 1.14816 1.54770 1.18017 1.18371 0.82671 0.79161 0.87094 1.90699 1.52101 1.60705 1.40963 1.20050 0.92766 0.95478 0.94346 1.22365 1.01739 1.02811 0.92514 1.21856 0.89583 0.88354 0.95478 1.20966 0.96671 1.04987 0.93208 1.66379 1.03104 1.22630 1.29526 1.19158 0.88817 0.95317 0.90865 1.19489 0.97087 1.08692 0.97083 1.24044 0.89594 0.96752 1.00674 1.76776 1.22425 1.16150 0.90975 1.49044 1.09068 1.47774 1.11532 1.21667 0.93600 0.91559 0.87621 1.22114 0.95723 1.00254 1.03055 1.22116 1.02092 0.93973 1.02974 0.93706 0.95212 0.94090 0.93850 0.90809 0.92627 0.75864 0.80965 0.87990 0.89483 0.87581 0.78575 0.86776 0.92295 0.87504 0.93288 0.87489 0.92323 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.52 71.98 0.61 -4.91 16 2 C -0.12 -5.76 5.45 30.59 0.17 -5.60 16 3 C 0.28 13.79 2.24 44.25 0.10 13.89 16 4 H 0.00 0.20 7.57 -2.39 -0.02 0.18 16 5 C -0.55 -27.75 8.73 25.60 0.22 -27.53 16 6 H 0.08 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.90 5.29 84.65 0.45 1.35 16 8 N -0.91 -51.07 11.29 21.45 0.24 -50.83 16 9 Si 0.97 40.73 29.54 68.60 2.03 42.75 16 10 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 13 N -0.69 -27.28 4.98 -448.96 -2.23 -29.52 16 14 C 0.54 21.52 6.37 86.79 0.55 22.07 16 15 O -0.56 -26.09 12.29 -3.85 -0.05 -26.13 16 16 C -0.01 -0.41 5.93 -19.73 -0.12 -0.53 16 17 C -0.17 -4.26 9.22 22.63 0.21 -4.05 16 18 C 0.20 4.37 6.77 42.71 0.29 4.66 16 19 C -0.10 -1.23 10.14 71.24 0.72 -0.51 16 20 N -0.50 -13.28 10.25 -181.10 -1.86 -15.14 16 21 C 0.30 9.13 7.96 134.13 1.07 10.20 16 22 C -0.21 -7.24 6.02 -21.17 -0.13 -7.37 16 23 C 0.08 2.87 11.29 85.63 0.97 3.83 16 24 N -0.25 -7.82 12.29 -56.50 -0.69 -8.52 16 25 N -0.38 -10.71 3.33 -324.48 -1.08 -11.79 16 26 C 0.16 3.02 3.70 44.99 0.17 3.19 16 27 C -0.15 -2.48 9.44 71.98 0.68 -1.80 16 28 C -0.15 -2.50 9.46 71.98 0.68 -1.82 16 29 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.03 1.41 7.85 -2.39 -0.02 1.39 16 31 H 0.04 1.76 5.66 -2.39 -0.01 1.75 16 32 H 0.04 1.93 8.14 -2.39 -0.02 1.92 16 33 H 0.07 3.96 5.95 -2.39 -0.01 3.95 16 34 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 35 H 0.40 13.16 6.68 -92.71 -0.62 12.54 16 36 H 0.17 3.23 6.52 -2.91 -0.02 3.21 16 37 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 39 H 0.11 0.87 8.07 -2.39 -0.02 0.85 16 40 H 0.20 6.82 7.08 -2.91 -0.02 6.80 16 41 H 0.11 2.02 8.07 -2.39 -0.02 2.00 16 42 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 46 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -68.25 382.74 3.37 -64.88 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.37 Total: 29.22 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 6.64 Total: 5.08 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -5.62 Total: -115.80 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Total: -68.25 3.37 -64.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183919345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.285 kcal (2) G-P(sol) polarization free energy of solvation -68.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds