Wall clock time and date at job start Tue Mar 31 2020 15:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21552 * 120.00054 * 0.02562 * 14 13 3 16 16 C 1.47868 * 120.00117 * 179.97438 * 14 13 3 17 17 C 1.39336 * 121.08872 * 0.02562 * 16 14 13 18 18 C 1.38651 * 119.36337 * 180.02562 * 17 16 14 19 19 C 1.50702 * 119.16653 * 179.97438 * 18 17 16 20 20 N 1.31482 * 121.67554 * 359.97438 * 18 17 16 21 21 C 1.32513 * 121.97228 * 0.02646 * 20 18 17 22 22 C 1.40971 * 120.21246 * 359.71189 * 21 20 18 23 23 C 1.41109 * 107.12999 * 180.36517 * 22 21 20 24 24 N 1.30249 * 108.58854 * 0.22802 * 23 22 21 25 25 N 1.37081 * 133.45174 * 180.02562 * 21 20 18 26 26 C 1.46495 * 125.90125 * 359.97438 * 25 21 20 27 27 C 1.53003 * 109.47057 * 120.00608 * 26 25 21 28 28 C 1.53002 * 109.47178 * 240.00391 * 26 25 21 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 36 36 H 1.07995 * 120.32088 * 0.02562 * 17 16 14 37 37 H 1.09008 * 109.47068 * 89.99873 * 19 18 17 38 38 H 1.08998 * 109.47387 * 210.00084 * 19 18 17 39 39 H 1.09006 * 109.46884 * 330.00426 * 19 18 17 40 40 H 1.08002 * 125.71020 * 180.24477 * 23 22 21 41 41 H 1.08999 * 109.47991 * 0.02562 * 26 25 21 42 42 H 1.08994 * 109.47244 * 59.99442 * 27 26 25 43 43 H 1.09006 * 109.47266 * 180.02562 * 27 26 25 44 44 H 1.08997 * 109.46864 * 299.99612 * 27 26 25 45 45 H 1.08997 * 109.47612 * 59.99945 * 28 26 25 46 46 H 1.08999 * 109.47285 * 180.02562 * 28 26 25 47 47 H 1.09002 * 109.46846 * 300.00044 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3414 2.6318 0.4324 16 6 0.0437 3.3249 2.6308 17 6 0.9156 3.3749 3.7165 18 6 0.5114 4.0031 4.8846 19 6 1.4577 4.0541 6.0564 20 7 -0.6766 4.5553 4.9961 21 6 -1.5524 4.5426 4.0017 22 6 -1.2240 3.9305 2.7750 23 6 -2.3382 4.0834 1.9228 24 7 -3.2656 4.7348 2.5648 25 7 -2.8247 5.0326 3.8597 26 6 -3.5853 5.7569 4.8810 27 6 -3.9422 7.1501 4.3587 28 6 -4.8688 4.9883 5.2018 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8292 -0.0609 -2.9500 35 1 2.2719 2.1231 1.9979 36 1 1.8968 2.9288 3.6489 37 1 2.0669 4.9558 5.9924 38 1 0.8864 4.0666 6.9845 39 1 2.1045 3.1768 6.0395 40 1 -2.4102 3.7208 0.9080 41 1 -2.9826 5.8513 5.7843 42 1 -4.5447 7.0561 3.4554 43 1 -4.5077 7.6892 5.1188 44 1 -3.0279 7.6976 4.1303 45 1 -4.6146 3.9958 5.5738 46 1 -5.4349 5.5274 5.9613 47 1 -5.4714 4.8944 4.2984 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183919357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:42 Heat of formation + Delta-G solvation = 54.938439 kcal Electronic energy + Delta-G solvation = -28479.391066 eV Core-core repulsion = 24663.494355 eV Total energy + Delta-G solvation = -3815.896711 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.78214 -39.25956 -38.24355 -35.80988 -35.11504 -33.08697 -32.21665 -31.92713 -30.84099 -29.65391 -27.55975 -27.53263 -26.97691 -24.40817 -23.15384 -22.87426 -22.20497 -20.86330 -19.61708 -19.40983 -17.91246 -17.20359 -16.88134 -16.07060 -15.74248 -15.30107 -14.99851 -14.65433 -14.56279 -14.41646 -14.09776 -14.03517 -13.49838 -13.34218 -13.17171 -12.74327 -12.65878 -12.51836 -12.44296 -12.25151 -12.16418 -11.85736 -11.59258 -11.56755 -11.53744 -11.28708 -11.03924 -10.86604 -10.79212 -10.38838 -10.37906 -10.22127 -9.87228 -9.65057 -9.12147 -9.08163 -8.75798 -8.54497 -8.33344 -7.92228 -6.16390 -4.26347 0.46135 1.16555 2.08196 2.53179 3.23125 3.27370 3.29128 3.29893 3.76224 3.97034 4.01731 4.27921 4.33948 4.66980 4.69390 4.72002 4.82022 4.86343 4.98030 5.15208 5.20792 5.27013 5.35046 5.44532 5.45090 5.48259 5.50095 5.56323 5.71419 5.83875 5.89372 5.91814 5.98257 6.30417 6.36175 6.42457 6.54554 6.62087 6.85043 7.00290 7.14762 7.27929 7.34764 7.47672 7.56348 7.66411 7.83928 7.87372 8.12345 8.53085 8.69703 8.96860 9.40689 10.88885 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.003010 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.918426 B = 9298.901397 C =10158.175139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.053 0.947 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.693 5.693 14 C 0.540 3.460 15 O -0.532 6.532 16 C 0.010 3.990 17 C -0.188 4.188 18 C 0.193 3.807 19 C -0.104 4.104 20 N -0.500 5.500 21 C 0.312 3.688 22 C -0.188 4.188 23 C 0.102 3.898 24 N -0.246 5.246 25 N -0.388 5.388 26 C 0.167 3.833 27 C -0.161 4.161 28 C -0.161 4.161 29 H 0.037 0.963 30 H 0.023 0.977 31 H 0.051 0.949 32 H 0.032 0.968 33 H 0.101 0.899 34 H 0.266 0.734 35 H 0.389 0.611 36 H 0.146 0.854 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.206 0.794 41 H 0.105 0.895 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.073 0.927 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.064 8.445 16.332 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.341 5.341 14 C 0.324 3.676 15 O -0.411 6.411 16 C -0.004 4.004 17 C -0.210 4.210 18 C 0.044 3.956 19 C -0.162 4.162 20 N -0.217 5.217 21 C 0.072 3.928 22 C -0.199 4.199 23 C -0.093 4.093 24 N -0.059 5.059 25 N -0.179 5.179 26 C 0.066 3.934 27 C -0.219 4.219 28 C -0.218 4.218 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.223 0.777 36 H 0.164 0.836 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.223 0.777 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.203 9.308 16.230 21.807 hybrid contribution 2.339 -0.752 -0.455 2.499 sum -8.863 8.556 15.775 20.016 Atomic orbital electron populations 1.21851 0.98289 0.98207 1.01226 1.21943 0.92656 0.99598 1.02443 1.18873 0.94384 0.89254 0.80554 0.92956 1.21166 0.90531 1.39392 1.06451 0.92055 1.24870 0.98632 0.94711 0.95326 1.69873 1.35289 1.37344 1.09312 0.86513 0.84781 0.78347 0.77500 1.20119 1.21120 1.20161 1.46491 1.13993 1.54779 1.18813 1.17959 0.83411 0.79877 0.86345 1.90719 1.51327 1.59543 1.39480 1.20312 0.91733 0.93613 0.94762 1.22000 1.01339 1.04335 0.93361 1.21073 0.89747 0.90175 0.94600 1.20793 0.97026 1.03526 0.94809 1.66209 1.02713 1.22211 1.30537 1.18951 0.87871 0.95167 0.90839 1.19314 0.96827 1.07648 0.96097 1.24142 0.88990 0.95464 1.00708 1.76856 1.22749 1.16732 0.89590 1.48646 1.09380 1.49122 1.10784 1.21237 0.93050 0.91051 0.88087 1.22148 1.02446 0.94778 1.02511 1.22145 0.96470 1.00522 1.02709 0.94361 0.95758 0.93003 0.94930 0.88132 0.92423 0.77717 0.83587 0.89837 0.90308 0.89874 0.77711 0.87750 0.91120 0.90788 0.92206 0.92193 0.90783 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.67 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.50 2.24 -69.08 -0.15 6.35 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.60 8.73 -34.44 -0.30 -13.90 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.98 11.29 55.43 0.63 -23.35 16 9 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.69 -13.69 4.98 -55.87 -0.28 -13.97 16 14 C 0.54 10.48 6.36 -12.32 -0.08 10.41 16 15 O -0.53 -11.64 12.27 5.32 0.07 -11.58 16 16 C 0.01 0.17 5.93 -104.41 -0.62 -0.45 16 17 C -0.19 -2.53 9.22 -39.02 -0.36 -2.89 16 18 C 0.19 2.41 6.77 -82.59 -0.56 1.85 16 19 C -0.10 -0.86 10.14 36.01 0.37 -0.49 16 20 N -0.50 -7.13 10.25 -8.59 -0.09 -7.22 16 21 C 0.31 4.85 7.96 -156.07 -1.24 3.61 16 22 C -0.19 -3.14 6.02 -106.63 -0.64 -3.78 16 23 C 0.10 1.65 11.29 -17.13 -0.19 1.46 16 24 N -0.25 -3.75 12.29 30.79 0.38 -3.37 16 25 N -0.39 -5.48 3.33 -53.91 -0.18 -5.66 16 26 C 0.17 1.75 3.70 -67.93 -0.25 1.50 16 27 C -0.16 -1.44 9.44 37.16 0.35 -1.09 16 28 C -0.16 -1.42 9.46 37.16 0.35 -1.07 16 29 H 0.04 0.81 5.64 -51.93 -0.29 0.51 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 1.18 7.84 -51.93 -0.41 0.78 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.39 6.59 6.68 -40.82 -0.27 6.32 16 36 H 0.15 1.62 6.52 -52.49 -0.34 1.28 16 37 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 40 H 0.21 3.23 7.08 -52.49 -0.37 2.86 16 41 H 0.10 1.03 8.07 -51.93 -0.42 0.62 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -30.16 382.70 -8.98 -39.14 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.00 Total: 7.88 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -3.26 Total: -2.63 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.46 Total: -53.57 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.07 Total: -11.58 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.16 -8.98 -39.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183919357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.082 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds