Wall clock time and date at job start Tue Mar 31 2020 15:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21552 * 120.00054 * 0.02562 * 14 13 3 16 16 C 1.47868 * 120.00117 * 179.97438 * 14 13 3 17 17 C 1.39336 * 121.08872 * 0.02562 * 16 14 13 18 18 C 1.38651 * 119.36337 * 180.02562 * 17 16 14 19 19 C 1.50702 * 119.16653 * 179.97438 * 18 17 16 20 20 N 1.31482 * 121.67554 * 359.97438 * 18 17 16 21 21 C 1.32513 * 121.97228 * 0.02646 * 20 18 17 22 22 C 1.40971 * 120.21246 * 359.71189 * 21 20 18 23 23 C 1.41109 * 107.12999 * 180.36517 * 22 21 20 24 24 N 1.30249 * 108.58854 * 0.22802 * 23 22 21 25 25 N 1.37081 * 133.45174 * 180.02562 * 21 20 18 26 26 C 1.46495 * 125.90125 * 359.97438 * 25 21 20 27 27 C 1.53003 * 109.47057 * 120.00608 * 26 25 21 28 28 C 1.53002 * 109.47178 * 240.00391 * 26 25 21 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 36 36 H 1.07995 * 120.32088 * 0.02562 * 17 16 14 37 37 H 1.09008 * 109.47068 * 89.99873 * 19 18 17 38 38 H 1.08998 * 109.47387 * 210.00084 * 19 18 17 39 39 H 1.09006 * 109.46884 * 330.00426 * 19 18 17 40 40 H 1.08002 * 125.71020 * 180.24477 * 23 22 21 41 41 H 1.08999 * 109.47991 * 0.02562 * 26 25 21 42 42 H 1.08994 * 109.47244 * 59.99442 * 27 26 25 43 43 H 1.09006 * 109.47266 * 180.02562 * 27 26 25 44 44 H 1.08997 * 109.46864 * 299.99612 * 27 26 25 45 45 H 1.08997 * 109.47612 * 59.99945 * 28 26 25 46 46 H 1.08999 * 109.47285 * 180.02562 * 28 26 25 47 47 H 1.09002 * 109.46846 * 300.00044 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3414 2.6318 0.4324 16 6 0.0437 3.3249 2.6308 17 6 0.9156 3.3749 3.7165 18 6 0.5114 4.0031 4.8846 19 6 1.4577 4.0541 6.0564 20 7 -0.6766 4.5553 4.9961 21 6 -1.5524 4.5426 4.0017 22 6 -1.2240 3.9305 2.7750 23 6 -2.3382 4.0834 1.9228 24 7 -3.2656 4.7348 2.5648 25 7 -2.8247 5.0326 3.8597 26 6 -3.5853 5.7569 4.8810 27 6 -3.9422 7.1501 4.3587 28 6 -4.8688 4.9883 5.2018 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8292 -0.0609 -2.9500 35 1 2.2719 2.1231 1.9979 36 1 1.8968 2.9288 3.6489 37 1 2.0669 4.9558 5.9924 38 1 0.8864 4.0666 6.9845 39 1 2.1045 3.1768 6.0395 40 1 -2.4102 3.7208 0.9080 41 1 -2.9826 5.8513 5.7843 42 1 -4.5447 7.0561 3.4554 43 1 -4.5077 7.6892 5.1188 44 1 -3.0279 7.6976 4.1303 45 1 -4.6146 3.9958 5.5738 46 1 -5.4349 5.5274 5.9613 47 1 -5.4714 4.8944 4.2984 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183919357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:41 Heat of formation + Delta-G solvation = 37.450817 kcal Electronic energy + Delta-G solvation = -28480.149386 eV Core-core repulsion = 24663.494355 eV Total energy + Delta-G solvation = -3816.655031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.92323 -40.75854 -39.41271 -37.05574 -36.57675 -34.57953 -33.85873 -32.90230 -32.51119 -30.74703 -29.03983 -28.32401 -28.24515 -25.81151 -24.78138 -23.96156 -23.40476 -22.22571 -21.31469 -20.75477 -19.10876 -18.62357 -18.06169 -17.66776 -17.07026 -16.86320 -16.21952 -16.11732 -16.03640 -15.59757 -15.17635 -14.93819 -14.83129 -14.60876 -14.54699 -14.02487 -13.87328 -13.63183 -13.43677 -13.18310 -13.17169 -13.13630 -13.03598 -12.88432 -12.72156 -12.62959 -12.47156 -12.43416 -12.18195 -12.05900 -11.81315 -11.61801 -11.48751 -11.20968 -11.03648 -10.53384 -10.45451 -9.89454 -9.68449 -9.40498 -8.13471 -6.30632 -0.73826 0.05512 1.05939 1.30734 1.48443 1.49760 1.57276 1.94027 2.25092 2.49867 2.74118 2.98208 3.16564 3.29500 3.53363 3.68149 3.70788 3.90498 3.92364 4.07011 4.21104 4.35746 4.42814 4.51808 4.58644 4.63170 4.63672 4.73558 4.76465 4.76799 4.82753 4.88466 4.95072 5.02938 5.09957 5.14882 5.17406 5.27882 5.32966 5.44487 5.47135 5.54080 5.61727 5.80608 5.84466 5.91989 6.17789 6.31976 6.75404 6.77319 6.89055 7.32120 7.47920 8.91695 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.003010 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.918426 B = 9298.901397 C =10158.175139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.280 3.720 4 H 0.003 0.997 5 C -0.548 4.548 6 H 0.075 0.925 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.289 1.289 12 H -0.272 1.272 13 N -0.689 5.689 14 C 0.541 3.459 15 O -0.564 6.564 16 C -0.012 4.012 17 C -0.172 4.172 18 C 0.198 3.802 19 C -0.101 4.101 20 N -0.499 5.499 21 C 0.298 3.702 22 C -0.212 4.212 23 C 0.084 3.916 24 N -0.249 5.249 25 N -0.382 5.382 26 C 0.155 3.845 27 C -0.154 4.154 28 C -0.153 4.153 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.029 0.971 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.265 0.735 35 H 0.405 0.595 36 H 0.173 0.827 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.198 0.802 41 H 0.114 0.886 42 H 0.058 0.942 43 H 0.106 0.894 44 H 0.047 0.953 45 H 0.048 0.952 46 H 0.106 0.894 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.854 9.173 19.740 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.021 0.979 5 C -0.586 4.586 6 H 0.093 0.907 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.215 1.215 12 H -0.197 1.197 13 N -0.338 5.338 14 C 0.327 3.673 15 O -0.445 6.445 16 C -0.026 4.026 17 C -0.194 4.194 18 C 0.047 3.953 19 C -0.158 4.158 20 N -0.216 5.216 21 C 0.058 3.942 22 C -0.223 4.223 23 C -0.111 4.111 24 N -0.063 5.063 25 N -0.174 5.174 26 C 0.055 3.945 27 C -0.212 4.212 28 C -0.211 4.211 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.241 0.759 36 H 0.190 0.810 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.125 0.875 40 H 0.214 0.786 41 H 0.132 0.868 42 H 0.077 0.923 43 H 0.125 0.875 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.125 0.875 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.008 10.056 19.680 24.261 hybrid contribution 1.919 -0.912 -1.421 2.556 sum -8.089 9.143 18.259 21.964 Atomic orbital electron populations 1.21690 0.97120 0.99147 1.00247 1.21792 0.93594 0.99052 1.01519 1.18443 0.93846 0.89163 0.80849 0.97877 1.21537 0.91210 1.39053 1.06829 0.90655 1.25733 1.03137 0.94387 0.95035 1.70033 1.37116 1.38267 1.09846 0.85458 0.79299 0.78416 0.77530 1.18720 1.21520 1.19721 1.46174 1.14683 1.54914 1.18005 1.18372 0.82668 0.79153 0.87108 1.90702 1.52178 1.60548 1.41042 1.20048 0.92815 0.95449 0.94325 1.22364 1.01596 1.02983 0.92486 1.21857 0.89602 0.88316 0.95499 1.20969 0.96481 1.05441 0.92945 1.66381 1.03130 1.22306 1.29820 1.19161 0.88638 0.95564 0.90793 1.19489 0.97142 1.08769 0.96944 1.24046 0.89656 0.96593 1.00770 1.76781 1.22650 1.16489 0.90403 1.49042 1.09241 1.48453 1.10684 1.21666 0.93546 0.91692 0.87549 1.22117 1.02084 0.93962 1.03013 1.22112 0.95730 1.00219 1.03061 0.94073 0.93717 0.95217 0.93845 0.90814 0.92623 0.75865 0.80963 0.88090 0.89442 0.87521 0.78576 0.86776 0.92295 0.87495 0.93351 0.93260 0.87500 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.51 71.98 0.61 -4.91 16 2 C -0.12 -5.76 5.45 30.59 0.17 -5.60 16 3 C 0.28 13.80 2.24 44.24 0.10 13.89 16 4 H 0.00 0.20 7.58 -2.39 -0.02 0.18 16 5 C -0.55 -27.75 8.73 25.60 0.22 -27.52 16 6 H 0.08 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.91 5.29 84.66 0.45 1.36 16 8 N -0.91 -51.07 11.29 21.45 0.24 -50.83 16 9 Si 0.97 40.72 29.54 68.60 2.03 42.75 16 10 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 11 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 N -0.69 -27.28 4.98 -448.96 -2.24 -29.52 16 14 C 0.54 21.51 6.36 86.79 0.55 22.06 16 15 O -0.56 -26.08 12.27 -3.88 -0.05 -26.13 16 16 C -0.01 -0.41 5.93 -19.73 -0.12 -0.53 16 17 C -0.17 -4.26 9.22 22.63 0.21 -4.05 16 18 C 0.20 4.37 6.77 42.71 0.29 4.66 16 19 C -0.10 -1.23 10.14 71.24 0.72 -0.51 16 20 N -0.50 -13.28 10.25 -181.09 -1.86 -15.13 16 21 C 0.30 9.13 7.96 134.13 1.07 10.20 16 22 C -0.21 -7.24 6.02 -21.17 -0.13 -7.37 16 23 C 0.08 2.87 11.29 85.63 0.97 3.83 16 24 N -0.25 -7.82 12.29 -56.50 -0.69 -8.52 16 25 N -0.38 -10.71 3.33 -324.47 -1.08 -11.79 16 26 C 0.16 3.02 3.70 44.99 0.17 3.19 16 27 C -0.15 -2.51 9.44 71.98 0.68 -1.83 16 28 C -0.15 -2.48 9.46 71.98 0.68 -1.80 16 29 H 0.04 1.77 5.64 -2.39 -0.01 1.76 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.03 1.41 7.84 -2.38 -0.02 1.39 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 3.96 5.95 -2.39 -0.01 3.95 16 34 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 35 H 0.40 13.15 6.68 -92.71 -0.62 12.53 16 36 H 0.17 3.23 6.52 -2.91 -0.02 3.21 16 37 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.11 0.86 8.07 -2.38 -0.02 0.84 16 40 H 0.20 6.82 7.08 -2.91 -0.02 6.80 16 41 H 0.11 2.02 8.07 -2.39 -0.02 2.00 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -68.24 382.70 3.36 -64.88 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: 0.37 Total: 29.21 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 6.64 Total: 5.07 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -5.63 Total: -115.79 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -68.24 3.36 -64.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183919357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.332 kcal (2) G-P(sol) polarization free energy of solvation -68.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds