Wall clock time and date at job start Tue Mar 31 2020 15:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47162 * 2 1 4 4 N 1.46500 * 109.47247 * 119.99927 * 2 1 3 5 5 C 1.34939 * 126.03778 * 275.00554 * 4 2 1 6 6 C 1.35319 * 107.74632 * 180.02562 * 5 4 2 7 7 C 1.50700 * 126.04041 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.46961 * 89.99936 * 7 6 5 9 9 C 1.39252 * 119.99967 * 179.97438 * 8 7 6 10 10 N 1.32296 * 119.73426 * 359.97438 * 9 8 7 11 11 C 1.32016 * 121.67649 * 179.75305 * 10 9 8 12 12 C 1.38011 * 120.95588 * 0.53509 * 11 10 9 13 13 C 1.38853 * 119.36761 * 359.47629 * 12 11 10 14 14 C 1.38708 * 118.45967 * 0.25127 * 13 12 11 15 15 O 1.36007 * 120.49879 * 180.02562 * 14 13 12 16 16 C 1.42898 * 116.99949 * 0.02562 * 15 14 13 17 17 C 1.52998 * 109.47212 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47474 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99947 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00050 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00195 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99872 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47074 * 89.99783 * 22 20 18 24 24 H 1.48494 * 109.47166 * 210.00095 * 22 20 18 25 25 H 1.48505 * 109.47078 * 329.99963 * 22 20 18 26 26 C 1.39864 * 107.92115 * 0.26036 * 6 5 4 27 27 N 1.30846 * 108.20053 * 359.55541 * 26 6 5 28 28 H 1.08995 * 109.47377 * 300.00381 * 1 2 3 29 29 H 1.09003 * 109.47251 * 60.00385 * 1 2 3 30 30 H 1.09000 * 109.47521 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47168 * 239.99859 * 2 1 3 32 32 H 1.09003 * 109.47195 * 59.99875 * 3 2 1 33 33 H 1.08999 * 109.47437 * 179.97438 * 3 2 1 34 34 H 1.09008 * 109.47404 * 299.99776 * 3 2 1 35 35 H 1.08007 * 126.12733 * 0.03517 * 5 4 2 36 36 H 1.09005 * 109.47017 * 330.00421 * 7 6 5 37 37 H 1.09000 * 109.47400 * 210.00367 * 7 6 5 38 38 H 0.97003 * 120.00337 * 0.02562 * 8 7 6 39 39 H 1.08000 * 119.52447 * 180.26419 * 11 10 9 40 40 H 1.08002 * 120.31999 * 179.75709 * 12 11 10 41 41 H 1.08004 * 120.77557 * 180.28159 * 13 12 11 42 42 H 1.09001 * 109.47624 * 299.99760 * 16 15 14 43 43 H 1.09002 * 109.47314 * 60.00403 * 16 15 14 44 44 H 1.09000 * 109.47280 * 300.00188 * 17 16 15 45 45 H 1.08999 * 109.47279 * 59.99805 * 17 16 15 46 46 H 0.96998 * 119.99736 * 180.02562 * 21 20 18 47 47 H 1.08002 * 125.90302 * 179.73389 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1932 -0.1393 2.4153 6 6 2.6570 -1.1050 3.2420 7 6 2.9935 -0.9367 4.7013 8 7 1.8055 -1.2159 5.5117 9 6 1.8725 -1.1250 6.8997 10 7 3.0117 -0.7865 7.4809 11 6 3.1170 -0.6841 8.7929 12 6 2.0372 -0.9390 9.6137 13 6 0.8210 -1.2975 9.0476 14 6 0.7373 -1.3921 7.6663 15 8 -0.4336 -1.7396 7.0679 16 6 -1.5487 -1.9955 7.9241 17 6 -2.7671 -2.3682 7.0771 18 6 -3.9433 -2.6375 7.9799 19 1 -3.8328 -2.5519 9.0508 20 6 -5.1603 -2.9943 7.4388 21 7 -5.2948 -3.0990 6.1348 22 14 -6.6180 -3.3288 8.5580 23 1 -7.3685 -2.0674 8.7838 24 1 -7.5116 -4.3293 7.9213 25 1 -6.1326 -3.8556 9.8589 26 6 2.7750 -2.2855 2.5012 27 7 2.3867 -2.0398 1.2761 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9564 -0.8901 35 1 1.9978 0.8886 2.6834 36 1 3.3245 0.0860 4.8821 37 1 3.7898 -1.6297 4.9728 38 1 0.9725 -1.4649 5.0816 39 1 4.0629 -0.4011 9.2304 40 1 2.1359 -0.8559 10.6860 41 1 -0.0399 -1.4976 9.6683 42 1 -1.3086 -2.8183 8.5975 43 1 -1.7717 -1.1020 8.5072 44 1 -3.0072 -1.5451 6.4040 45 1 -2.5445 -3.2615 6.4935 46 1 -6.1511 -3.3496 5.7542 47 1 3.1235 -3.2364 2.8763 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184288470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:08 Heat of formation + Delta-G solvation = 67.699052 kcal Electronic energy + Delta-G solvation = -27144.177367 eV Core-core repulsion = 23328.833998 eV Total energy + Delta-G solvation = -3815.343369 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.43202 -40.22781 -37.64289 -36.37246 -35.33834 -33.40895 -31.65679 -31.15393 -30.39272 -29.97970 -28.46342 -27.69564 -25.71861 -25.06997 -23.08276 -22.57583 -22.22835 -20.69760 -20.47824 -20.11727 -18.02366 -17.32714 -16.83525 -16.37407 -16.04627 -15.51878 -15.48293 -15.00846 -14.76487 -14.57736 -14.45496 -14.21141 -13.95246 -13.73219 -13.38867 -13.26089 -12.87959 -12.72205 -12.63900 -12.49154 -12.34094 -12.16829 -11.80350 -11.76492 -11.75971 -11.47685 -10.97504 -10.93375 -10.71525 -10.59829 -10.04142 -9.90650 -9.71548 -9.52935 -9.42041 -9.25030 -8.82817 -8.59673 -8.46248 -7.02802 -6.12171 -4.16737 1.63608 1.65631 1.75325 2.29816 2.57559 3.25931 3.32052 3.34809 3.70999 3.78277 4.13400 4.18090 4.39286 4.48381 4.63152 4.65494 4.76309 4.86808 5.06893 5.13823 5.16845 5.19699 5.24401 5.31088 5.31475 5.38948 5.44101 5.51930 5.57473 5.67236 5.74184 5.83051 5.88641 6.01880 6.03200 6.13187 6.27670 6.43816 6.53386 6.65468 6.73708 6.88285 7.32733 7.50280 7.59495 7.60682 7.62139 7.82643 8.07642 8.22334 8.48063 8.88776 9.47698 10.99293 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.007837 B = 0.003113 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3572.051267 B = 8991.366737 C =11999.700228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.155 3.845 3 C -0.165 4.165 4 N -0.366 5.366 5 C 0.079 3.921 6 C -0.259 4.259 7 C 0.220 3.780 8 N -0.717 5.717 9 C 0.383 3.617 10 N -0.517 5.517 11 C 0.091 3.909 12 C -0.196 4.196 13 C -0.138 4.138 14 C 0.036 3.964 15 O -0.316 6.316 16 C 0.069 3.931 17 C 0.027 3.973 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.889 5.889 22 Si 0.898 3.102 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.065 3.935 27 N -0.298 5.298 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.172 0.828 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.415 0.585 39 H 0.150 0.850 40 H 0.127 0.873 41 H 0.137 0.863 42 H 0.049 0.951 43 H 0.048 0.952 44 H 0.026 0.974 45 H 0.027 0.973 46 H 0.263 0.737 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.038 8.821 -7.546 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.053 3.947 3 C -0.223 4.223 4 N -0.148 5.148 5 C -0.069 4.069 6 C -0.271 4.271 7 C 0.095 3.905 8 N -0.354 5.354 9 C 0.145 3.855 10 N -0.237 5.237 11 C -0.064 4.064 12 C -0.219 4.219 13 C -0.164 4.164 14 C -0.016 4.016 15 O -0.229 6.229 16 C -0.006 4.006 17 C -0.010 4.010 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.122 4.122 27 N -0.118 5.118 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.189 0.811 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.252 0.748 39 H 0.167 0.833 40 H 0.145 0.855 41 H 0.155 0.845 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.073 0.927 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 18.494 8.537 -9.813 22.610 hybrid contribution -1.937 -0.136 2.092 2.854 sum 16.557 8.400 -7.721 20.108 Atomic orbital electron populations 1.22261 0.93272 1.03729 1.03289 1.21283 0.95074 0.92636 0.85705 1.22210 1.02203 0.94069 1.03840 1.48847 1.50102 1.07401 1.08426 1.22310 0.99327 0.99820 0.85422 1.20129 1.15732 0.93921 0.97307 1.19215 0.87358 1.00711 0.83234 1.44621 1.14004 1.75904 1.00878 1.17820 0.87381 0.94890 0.85443 1.67182 1.23286 1.20029 1.13194 1.22093 0.98418 0.98146 0.87710 1.21587 0.93477 1.06027 1.00771 1.21512 0.99445 1.02191 0.93295 1.19534 0.87767 1.02513 0.91786 1.86098 1.16843 1.82713 1.37263 1.23278 0.84514 0.98729 0.94046 1.19099 0.88568 0.97853 0.95477 1.20971 0.94521 1.47912 0.93052 0.92381 1.24984 0.98895 0.95150 0.95125 1.69973 1.25067 1.47375 1.10323 0.86495 0.82163 0.78152 0.80634 1.20498 1.21046 1.19741 1.23830 0.98601 0.99170 0.90611 1.77383 1.20633 0.93124 1.20684 0.91580 0.90455 0.91348 0.88039 0.91374 0.91508 0.89908 0.81131 0.91902 0.91517 0.74801 0.83270 0.85541 0.84505 0.93290 0.93333 0.95543 0.95468 0.92731 0.80046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.52 37.16 0.35 -1.00 16 2 C 0.15 1.24 3.93 -67.93 -0.27 0.97 16 3 C -0.17 -0.91 8.83 37.16 0.33 -0.58 16 4 N -0.37 -4.04 3.53 -54.87 -0.19 -4.23 16 5 C 0.08 0.84 10.50 -17.23 -0.18 0.66 16 6 C -0.26 -3.01 5.47 -105.05 -0.57 -3.58 16 7 C 0.22 2.64 6.18 -5.19 -0.03 2.61 16 8 N -0.72 -10.52 5.70 -61.44 -0.35 -10.87 16 9 C 0.38 6.25 7.50 -154.71 -1.16 5.09 16 10 N -0.52 -7.82 9.57 -12.28 -0.12 -7.94 16 11 C 0.09 1.19 11.17 -17.56 -0.20 0.99 16 12 C -0.20 -2.58 10.10 -39.44 -0.40 -2.98 16 13 C -0.14 -2.17 9.14 -39.18 -0.36 -2.53 16 14 C 0.04 0.64 6.73 -38.92 -0.26 0.38 16 15 O -0.32 -6.35 9.38 -19.76 -0.19 -6.54 16 16 C 0.07 1.45 4.70 37.16 0.17 1.63 16 17 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 18 C -0.53 -14.58 9.11 -34.44 -0.31 -14.90 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 22 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 C 0.06 0.79 11.96 -17.36 -0.21 0.58 16 27 N -0.30 -3.95 12.58 30.63 0.39 -3.57 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.37 7.16 -51.93 -0.37 0.00 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.32 8.14 -51.92 -0.42 -0.11 16 35 H 0.17 1.40 7.26 -52.48 -0.38 1.02 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.41 6.51 7.81 -40.82 -0.32 6.19 16 39 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 40 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.14 2.06 6.44 -52.48 -0.34 1.73 16 42 H 0.05 1.00 7.70 -51.93 -0.40 0.60 16 43 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.18 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 396.23 15.07 5.97 5.97 Total: -1.00 -32.39 396.23 -9.36 -41.75 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.25 Total: 5.33 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -3.34 Total: -10.49 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.46 Total: -52.19 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.19 Total: -6.54 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.39 -9.36 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184288470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.449 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds