Wall clock time and date at job start Tue Mar 31 2020 15:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47162 * 2 1 4 4 N 1.46500 * 109.47247 * 119.99927 * 2 1 3 5 5 C 1.34939 * 126.03778 * 275.00554 * 4 2 1 6 6 C 1.35319 * 107.74632 * 180.02562 * 5 4 2 7 7 C 1.50700 * 126.04041 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.46961 * 89.99936 * 7 6 5 9 9 C 1.39252 * 119.99967 * 179.97438 * 8 7 6 10 10 N 1.32296 * 119.73426 * 359.97438 * 9 8 7 11 11 C 1.32016 * 121.67649 * 179.75305 * 10 9 8 12 12 C 1.38011 * 120.95588 * 0.53509 * 11 10 9 13 13 C 1.38853 * 119.36761 * 359.47629 * 12 11 10 14 14 C 1.38708 * 118.45967 * 0.25127 * 13 12 11 15 15 O 1.36007 * 120.49879 * 180.02562 * 14 13 12 16 16 C 1.42898 * 116.99949 * 0.02562 * 15 14 13 17 17 C 1.52998 * 109.47212 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47474 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99947 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00050 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00195 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99872 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47074 * 89.99783 * 22 20 18 24 24 H 1.48494 * 109.47166 * 210.00095 * 22 20 18 25 25 H 1.48505 * 109.47078 * 329.99963 * 22 20 18 26 26 C 1.39864 * 107.92115 * 0.26036 * 6 5 4 27 27 N 1.30846 * 108.20053 * 359.55541 * 26 6 5 28 28 H 1.08995 * 109.47377 * 300.00381 * 1 2 3 29 29 H 1.09003 * 109.47251 * 60.00385 * 1 2 3 30 30 H 1.09000 * 109.47521 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47168 * 239.99859 * 2 1 3 32 32 H 1.09003 * 109.47195 * 59.99875 * 3 2 1 33 33 H 1.08999 * 109.47437 * 179.97438 * 3 2 1 34 34 H 1.09008 * 109.47404 * 299.99776 * 3 2 1 35 35 H 1.08007 * 126.12733 * 0.03517 * 5 4 2 36 36 H 1.09005 * 109.47017 * 330.00421 * 7 6 5 37 37 H 1.09000 * 109.47400 * 210.00367 * 7 6 5 38 38 H 0.97003 * 120.00337 * 0.02562 * 8 7 6 39 39 H 1.08000 * 119.52447 * 180.26419 * 11 10 9 40 40 H 1.08002 * 120.31999 * 179.75709 * 12 11 10 41 41 H 1.08004 * 120.77557 * 180.28159 * 13 12 11 42 42 H 1.09001 * 109.47624 * 299.99760 * 16 15 14 43 43 H 1.09002 * 109.47314 * 60.00403 * 16 15 14 44 44 H 1.09000 * 109.47280 * 300.00188 * 17 16 15 45 45 H 1.08999 * 109.47279 * 59.99805 * 17 16 15 46 46 H 0.96998 * 119.99736 * 180.02562 * 21 20 18 47 47 H 1.08002 * 125.90302 * 179.73389 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1932 -0.1393 2.4153 6 6 2.6570 -1.1050 3.2420 7 6 2.9935 -0.9367 4.7013 8 7 1.8055 -1.2159 5.5117 9 6 1.8725 -1.1250 6.8997 10 7 3.0117 -0.7865 7.4809 11 6 3.1170 -0.6841 8.7929 12 6 2.0372 -0.9390 9.6137 13 6 0.8210 -1.2975 9.0476 14 6 0.7373 -1.3921 7.6663 15 8 -0.4336 -1.7396 7.0679 16 6 -1.5487 -1.9955 7.9241 17 6 -2.7671 -2.3682 7.0771 18 6 -3.9433 -2.6375 7.9799 19 1 -3.8328 -2.5519 9.0508 20 6 -5.1603 -2.9943 7.4388 21 7 -5.2948 -3.0990 6.1348 22 14 -6.6180 -3.3288 8.5580 23 1 -7.3685 -2.0674 8.7838 24 1 -7.5116 -4.3293 7.9213 25 1 -6.1326 -3.8556 9.8589 26 6 2.7750 -2.2855 2.5012 27 7 2.3867 -2.0398 1.2761 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9564 -0.8901 35 1 1.9978 0.8886 2.6834 36 1 3.3245 0.0860 4.8821 37 1 3.7898 -1.6297 4.9728 38 1 0.9725 -1.4649 5.0816 39 1 4.0629 -0.4011 9.2304 40 1 2.1359 -0.8559 10.6860 41 1 -0.0399 -1.4976 9.6683 42 1 -1.3086 -2.8183 8.5975 43 1 -1.7717 -1.1020 8.5072 44 1 -3.0072 -1.5451 6.4040 45 1 -2.5445 -3.2615 6.4935 46 1 -6.1511 -3.3496 5.7542 47 1 3.1235 -3.2364 2.8763 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184288470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:07 Heat of formation + Delta-G solvation = 48.742490 kcal Electronic energy + Delta-G solvation = -27144.999386 eV Core-core repulsion = 23328.833998 eV Total energy + Delta-G solvation = -3816.165387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.31050 -41.44856 -39.05570 -37.21120 -36.26990 -35.47778 -32.76049 -32.65084 -31.55464 -31.19847 -29.58381 -28.26402 -27.16236 -26.49685 -24.30086 -23.66062 -23.45620 -22.28634 -21.40718 -20.92887 -19.40012 -18.62960 -18.04303 -17.76475 -17.44482 -16.99998 -16.53443 -16.28430 -15.87856 -15.74687 -15.50689 -15.27383 -15.05132 -14.83158 -14.43837 -14.34941 -14.17213 -13.94338 -13.69190 -13.57309 -13.32990 -13.16952 -13.12482 -12.98566 -12.75090 -12.69899 -12.40855 -12.37790 -12.12195 -11.72076 -11.64543 -11.60843 -11.43472 -11.06974 -10.62605 -10.49255 -10.42038 -10.07380 -9.50482 -8.27068 -8.21469 -6.40490 0.44367 0.52511 0.87876 1.40375 1.42365 1.52962 1.53466 1.61943 2.25229 2.49373 2.61984 3.03089 3.07547 3.45951 3.73959 3.86187 3.87884 4.00270 4.03359 4.06414 4.14477 4.24305 4.29111 4.32232 4.42333 4.42969 4.58290 4.63978 4.64731 4.75110 4.75855 4.77498 4.88834 4.91079 5.11156 5.14101 5.17316 5.23568 5.30995 5.36497 5.47792 5.62289 5.63068 5.72721 6.05790 6.09388 6.20874 6.39678 6.69013 6.70300 6.74690 7.29658 7.31399 8.85774 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.007837 B = 0.003113 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3572.051267 B = 8991.366737 C =11999.700228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 C -0.157 4.157 4 N -0.366 5.366 5 C 0.083 3.917 6 C -0.271 4.271 7 C 0.229 3.771 8 N -0.720 5.720 9 C 0.373 3.627 10 N -0.524 5.524 11 C 0.099 3.901 12 C -0.192 4.192 13 C -0.139 4.139 14 C -0.006 4.006 15 O -0.335 6.335 16 C 0.088 3.912 17 C 0.032 3.968 18 C -0.545 4.545 19 H 0.070 0.930 20 C 0.002 3.998 21 N -0.930 5.930 22 Si 0.974 3.026 23 H -0.270 1.270 24 H -0.282 1.282 25 H -0.259 1.259 26 C 0.055 3.945 27 N -0.332 5.332 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.042 0.958 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.196 0.804 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.406 0.594 39 H 0.190 0.810 40 H 0.162 0.838 41 H 0.140 0.860 42 H 0.057 0.943 43 H 0.058 0.942 44 H -0.003 1.003 45 H -0.004 1.004 46 H 0.266 0.734 47 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.969 10.205 -5.739 22.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.046 3.954 3 C -0.215 4.215 4 N -0.148 5.148 5 C -0.066 4.066 6 C -0.283 4.283 7 C 0.105 3.895 8 N -0.355 5.355 9 C 0.136 3.864 10 N -0.244 5.244 11 C -0.056 4.056 12 C -0.215 4.215 13 C -0.166 4.166 14 C -0.058 4.058 15 O -0.249 6.249 16 C 0.014 3.986 17 C -0.005 4.005 18 C -0.583 4.583 19 H 0.089 0.911 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.798 3.202 23 H -0.195 1.195 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.131 4.131 27 N -0.153 5.153 28 H 0.076 0.924 29 H 0.122 0.878 30 H 0.061 0.939 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.212 0.788 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.241 0.759 39 H 0.207 0.793 40 H 0.180 0.820 41 H 0.157 0.843 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.016 0.984 45 H 0.014 0.986 46 H 0.075 0.925 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 19.460 9.929 -8.022 23.273 hybrid contribution -2.093 -0.514 1.516 2.635 sum 17.368 9.415 -6.506 20.799 Atomic orbital electron populations 1.22240 0.93408 1.02293 1.04196 1.21592 0.94946 0.94040 0.84796 1.22190 1.02090 0.92141 1.05115 1.49149 1.49478 1.06807 1.09386 1.22702 0.98061 1.00681 0.85119 1.20153 1.16779 0.94149 0.97236 1.19189 0.86325 1.00878 0.83065 1.44775 1.14314 1.75611 1.00784 1.17986 0.87428 0.95070 0.85962 1.67310 1.22449 1.20260 1.14395 1.22855 0.99945 0.95764 0.86994 1.21958 0.92197 1.04683 1.02616 1.21750 1.00772 1.01516 0.92532 1.19797 0.87169 1.05724 0.93066 1.86016 1.17558 1.83917 1.37443 1.22792 0.83613 0.99294 0.92936 1.18914 0.90939 0.95352 0.95306 1.21404 0.95260 1.47781 0.93851 0.91135 1.26020 1.02263 0.94667 0.96681 1.70120 1.26035 1.48318 1.12492 0.85313 0.77954 0.78251 0.78732 1.19502 1.20780 1.18308 1.24103 0.98468 0.99960 0.90580 1.77316 1.21878 0.94723 1.21397 0.92360 0.87825 0.93900 0.87831 0.91039 0.91580 0.87678 0.78760 0.91274 0.91559 0.75852 0.79305 0.82047 0.84254 0.92520 0.92383 0.98438 0.98573 0.92531 0.79036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.52 71.98 0.69 -1.94 16 2 C 0.15 2.29 3.93 44.99 0.18 2.46 16 3 C -0.16 -1.48 8.83 71.98 0.64 -0.84 16 4 N -0.37 -8.16 3.53 -327.50 -1.15 -9.32 16 5 C 0.08 1.75 10.50 83.54 0.88 2.62 16 6 C -0.27 -6.39 5.47 -20.14 -0.11 -6.50 16 7 C 0.23 5.50 6.18 85.63 0.53 6.03 16 8 N -0.72 -21.54 5.70 -348.28 -1.98 -23.53 16 9 C 0.37 12.08 7.50 133.11 1.00 13.08 16 10 N -0.52 -14.92 9.57 -192.78 -1.84 -16.76 16 11 C 0.10 2.27 11.17 84.61 0.95 3.22 16 12 C -0.19 -4.46 10.10 22.36 0.23 -4.23 16 13 C -0.14 -4.19 9.14 22.53 0.21 -3.99 16 14 C -0.01 -0.22 6.73 22.70 0.15 -0.07 16 15 O -0.34 -13.99 9.38 -93.63 -0.88 -14.87 16 16 C 0.09 3.83 4.70 71.98 0.34 4.17 16 17 C 0.03 1.75 5.34 29.85 0.16 1.91 16 18 C -0.55 -30.66 9.11 25.60 0.23 -30.42 16 19 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 20 C 0.00 0.13 5.46 84.66 0.46 0.59 16 21 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 22 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 26 C 0.05 1.39 11.96 85.23 1.02 2.41 16 27 N -0.33 -9.12 12.58 -57.02 -0.72 -9.84 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 0.64 7.16 -2.39 -0.02 0.62 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.20 2.98 7.26 -2.91 -0.02 2.96 16 36 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.41 13.44 7.81 -92.71 -0.72 12.71 16 39 H 0.19 2.76 8.06 -2.91 -0.02 2.73 16 40 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 41 H 0.14 4.02 6.44 -2.91 -0.02 4.00 16 42 H 0.06 2.33 7.70 -2.39 -0.02 2.31 16 43 H 0.06 2.37 7.70 -2.39 -0.02 2.35 16 44 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 16 45 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 46 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 47 H 0.19 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -72.22 396.23 3.51 -68.71 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.25 Total: 27.97 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 7.53 Total: -11.51 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -5.42 Total: -115.74 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.88 Total: -14.87 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -72.22 3.51 -68.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184288470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.453 kcal (2) G-P(sol) polarization free energy of solvation -72.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds