Wall clock time and date at job start Tue Mar 31 2020 15:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47072 * 2 1 4 4 H 1.09000 * 109.47497 * 55.00638 * 3 2 1 5 5 C 1.50709 * 109.46959 * 174.99809 * 3 2 1 6 6 H 1.08001 * 119.99653 * 120.00094 * 5 3 2 7 7 C 1.37878 * 119.99961 * 300.00136 * 5 3 2 8 8 N 1.31515 * 119.99743 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99692 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46840 * 60.00444 * 9 7 5 11 11 H 1.48508 * 109.46924 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47245 * 300.00161 * 9 7 5 13 13 N 1.46491 * 109.47626 * 294.99941 * 3 2 1 14 14 C 1.34781 * 120.00352 * 84.99914 * 13 3 2 15 15 O 1.21591 * 119.99309 * 0.02562 * 14 13 3 16 16 N 1.34779 * 120.00306 * 180.02562 * 14 13 3 17 17 C 1.39927 * 119.99566 * 185.32100 * 16 14 13 18 18 C 1.39589 * 119.77523 * 213.58872 * 17 16 14 19 19 C 1.36258 * 120.61596 * 180.02562 * 18 17 16 20 20 C 1.40131 * 119.93736 * 359.96153 * 19 18 17 21 21 C 1.41633 * 133.49152 * 179.70340 * 20 19 18 22 22 N 1.30120 * 108.67468 * 179.90853 * 21 20 19 23 23 N 1.40016 * 109.78423 * 0.38504 * 22 21 20 24 24 C 1.46505 * 125.95070 * 179.75747 * 23 22 21 25 25 C 1.52999 * 109.46775 * 299.99601 * 24 23 22 26 26 C 1.52993 * 109.46972 * 59.99774 * 24 23 22 27 27 C 1.37167 * 108.10149 * 359.75398 * 23 22 21 28 28 C 1.38228 * 119.77928 * 33.57667 * 17 16 14 29 29 H 1.08998 * 109.47288 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47445 * 300.00023 * 1 2 3 31 31 H 1.08998 * 109.47146 * 59.99705 * 1 2 3 32 32 H 1.09003 * 109.46755 * 240.00110 * 2 1 3 33 33 H 1.09002 * 109.46715 * 120.00093 * 2 1 3 34 34 H 0.97002 * 119.99262 * 179.97438 * 8 7 5 35 35 H 0.97007 * 120.00450 * 265.00534 * 13 3 2 36 36 H 0.96999 * 119.99683 * 5.32270 * 16 14 13 37 37 H 1.08001 * 119.69284 * 0.02562 * 18 17 16 38 38 H 1.08002 * 120.03048 * 179.97438 * 19 18 17 39 39 H 1.07998 * 125.66268 * 0.24887 * 21 20 19 40 40 H 1.08997 * 109.46872 * 179.97438 * 24 23 22 41 41 H 1.09007 * 109.46721 * 180.02562 * 25 24 23 42 42 H 1.08996 * 109.47453 * 300.00089 * 25 24 23 43 43 H 1.08997 * 109.47357 * 60.00375 * 25 24 23 44 44 H 1.08999 * 109.47272 * 60.00278 * 26 24 23 45 45 H 1.09007 * 109.46909 * 179.97438 * 26 24 23 46 46 H 1.08997 * 109.47244 * 299.99676 * 26 24 23 47 47 H 1.07998 * 120.16805 * 359.97040 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3365 2.1729 9 14 6.0050 0.8799 1.3812 10 1 6.5004 2.2798 1.3809 11 1 6.3978 0.2154 2.6499 12 1 6.5966 0.1452 0.2344 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6326 -0.4317 16 7 0.0785 3.2667 -2.5187 17 6 -1.1390 3.9513 -2.6023 18 6 -1.8465 3.9629 -3.8056 19 6 -3.0335 4.6245 -3.9063 20 6 -3.5537 5.3006 -2.7946 21 6 -4.7262 6.0656 -2.5798 22 7 -4.7348 6.4772 -1.3455 23 7 -3.5854 6.0242 -0.6868 24 6 -3.2354 6.2868 0.7114 25 6 -3.1134 7.7959 0.9317 26 6 -4.3267 5.7246 1.6245 27 6 -2.8440 5.2916 -1.5785 28 6 -1.6330 4.6113 -1.4929 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8293 -0.0620 2.9495 35 1 2.2720 2.1231 -1.9978 36 1 0.6658 3.2254 -3.2896 37 1 -1.4495 3.4425 -4.6647 38 1 -3.5728 4.6276 -4.8420 39 1 -5.4893 6.2685 -3.3166 40 1 -2.2847 5.8072 0.9442 41 1 -2.8525 7.9913 1.9719 42 1 -2.3359 8.1964 0.2812 43 1 -4.0643 8.2751 0.6991 44 1 -4.4136 4.6495 1.4675 45 1 -4.0661 5.9196 2.6648 46 1 -5.2776 6.2039 1.3918 47 1 -1.0822 4.5989 -0.5640 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184562467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:09 Heat of formation + Delta-G solvation = 55.678774 kcal Electronic energy + Delta-G solvation = -28383.296910 eV Core-core repulsion = 24567.432302 eV Total energy + Delta-G solvation = -3815.864608 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.42565 -39.86966 -37.44044 -35.75168 -35.03741 -33.76143 -32.40181 -31.56867 -30.85147 -28.89849 -28.57737 -27.38809 -26.81762 -23.58819 -23.07147 -22.82068 -21.89338 -20.59411 -19.72017 -19.50377 -18.25684 -17.72369 -16.80507 -16.13984 -15.82406 -15.24100 -15.09378 -14.95334 -14.71438 -14.44963 -14.17518 -13.80804 -13.62292 -13.25440 -13.20633 -12.69944 -12.66006 -12.41994 -12.38726 -12.28002 -11.81160 -11.57643 -11.43774 -11.39581 -11.28389 -11.14410 -11.00514 -10.85383 -10.62281 -10.35192 -10.20619 -10.05773 -9.84423 -9.58863 -9.36796 -9.07891 -8.53917 -8.04635 -7.86102 -7.59903 -6.15953 -4.25551 1.02576 1.61375 2.38404 2.62350 3.16137 3.22949 3.28714 3.30930 3.67037 4.05098 4.28969 4.36173 4.62635 4.83204 4.84253 4.93187 5.00232 5.13236 5.15753 5.20780 5.33033 5.42646 5.50161 5.57264 5.60690 5.65241 5.75936 5.95822 6.04245 6.18850 6.28298 6.38922 6.40676 6.46176 6.53260 6.64450 6.67184 6.98652 7.03276 7.09101 7.23568 7.32614 7.34897 7.42351 7.60911 7.71879 7.83137 7.94689 8.15268 8.69195 8.80601 9.20808 9.42852 10.89287 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.002976 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.074948 B = 9406.450937 C =10244.931352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.287 3.713 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.718 5.718 14 C 0.691 3.309 15 O -0.573 6.573 16 N -0.695 5.695 17 C 0.227 3.773 18 C -0.183 4.183 19 C -0.025 4.025 20 C -0.206 4.206 21 C 0.068 3.932 22 N -0.261 5.261 23 N -0.395 5.395 24 C 0.163 3.837 25 C -0.159 4.159 26 C -0.160 4.160 27 C 0.151 3.849 28 C -0.152 4.152 29 H 0.021 0.979 30 H 0.049 0.951 31 H 0.038 0.962 32 H 0.030 0.970 33 H 0.099 0.901 34 H 0.265 0.735 35 H 0.386 0.614 36 H 0.404 0.596 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.187 0.813 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.016 10.393 -10.009 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.369 5.369 14 C 0.392 3.608 15 O -0.450 6.450 16 N -0.343 5.343 17 C 0.127 3.873 18 C -0.204 4.204 19 C -0.047 4.047 20 C -0.214 4.214 21 C -0.127 4.127 22 N -0.074 5.074 23 N -0.184 5.184 24 C 0.062 3.938 25 C -0.217 4.217 26 C -0.218 4.218 27 C 0.034 3.966 28 C -0.177 4.177 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.218 0.782 36 H 0.239 0.761 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.204 0.796 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.207 10.906 -7.770 18.808 hybrid contribution 2.068 -0.661 -1.204 2.483 sum -11.139 10.245 -8.974 17.595 Atomic orbital electron populations 1.21813 0.98251 0.97928 1.01272 1.21962 0.92680 0.99869 1.02254 1.18714 0.93985 0.88889 0.79870 0.93249 1.21182 0.90628 1.39257 1.06357 0.92133 1.24872 0.98616 0.94763 0.95354 1.69886 1.35237 1.37384 1.09344 0.86506 0.84788 0.78310 0.77479 1.20192 1.21117 1.20163 1.45855 1.12949 1.58750 1.19308 1.16129 0.83619 0.78746 0.82335 1.90912 1.51613 1.64379 1.38144 1.42925 1.20198 1.55981 1.15184 1.17136 0.85899 0.90654 0.93584 1.20373 0.96699 1.05848 0.97524 1.20041 0.94156 0.93968 0.96485 1.18884 0.98462 1.08942 0.95108 1.23787 0.97485 0.97295 0.94127 1.76530 1.04133 1.19637 1.07088 1.48576 1.16037 1.44247 1.09512 1.21227 0.99423 0.97170 0.76022 1.22136 1.03030 0.94178 1.02382 1.22127 0.98805 1.01848 0.99003 1.18655 0.93756 0.94463 0.89687 1.19951 0.95880 1.01122 1.00791 0.95993 0.93198 0.94282 0.95072 0.88257 0.92461 0.78196 0.76098 0.85537 0.85418 0.79608 0.87935 0.90779 0.92211 0.91385 0.91936 0.90776 0.91459 0.84193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.21 16 3 C 0.29 6.98 2.24 -69.09 -0.15 6.83 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.70 8.73 -34.44 -0.30 -14.00 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.16 11.29 55.43 0.63 -23.53 16 9 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.72 -14.14 5.03 -59.82 -0.30 -14.44 16 14 C 0.69 13.23 6.86 -86.91 -0.60 12.63 16 15 O -0.57 -12.93 11.16 5.29 0.06 -12.87 16 16 N -0.70 -10.19 5.34 -14.20 -0.08 -10.27 16 17 C 0.23 3.36 6.28 -83.66 -0.53 2.83 16 18 C -0.18 -2.16 9.87 -39.79 -0.39 -2.55 16 19 C -0.03 -0.28 10.05 -39.58 -0.40 -0.68 16 20 C -0.21 -2.70 6.17 -106.92 -0.66 -3.36 16 21 C 0.07 0.80 12.05 -16.98 -0.20 0.59 16 22 N -0.26 -3.55 12.28 30.88 0.38 -3.17 16 23 N -0.40 -5.64 3.34 -52.24 -0.17 -5.82 16 24 C 0.16 2.01 3.70 -67.93 -0.25 1.76 16 25 C -0.16 -1.63 9.45 37.16 0.35 -1.28 16 26 C -0.16 -1.78 9.45 37.15 0.35 -1.43 16 27 C 0.15 2.31 6.88 -84.17 -0.58 1.73 16 28 C -0.15 -2.49 8.44 -39.24 -0.33 -2.82 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 31 H 0.04 0.86 5.64 -51.93 -0.29 0.56 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 34 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.39 6.49 8.56 -40.82 -0.35 6.14 16 36 H 0.40 4.46 8.83 -40.82 -0.36 4.10 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.19 1.40 8.06 -52.49 -0.42 0.97 16 40 H 0.10 1.33 7.48 -51.93 -0.39 0.94 16 41 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.14 2.59 6.01 -52.49 -0.32 2.28 16 LS Contribution 381.97 15.07 5.76 5.76 Total: -1.00 -31.25 381.97 -9.37 -40.62 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -7.01 Total: 12.59 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -3.61 Total: -4.01 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.45 Total: -57.23 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.06 Total: -12.87 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.25 -9.37 -40.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184562467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.299 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds