Wall clock time and date at job start Tue Mar 31 2020 15:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47072 * 2 1 4 4 H 1.09000 * 109.47497 * 55.00638 * 3 2 1 5 5 C 1.50709 * 109.46959 * 174.99809 * 3 2 1 6 6 H 1.08001 * 119.99653 * 120.00094 * 5 3 2 7 7 C 1.37878 * 119.99961 * 300.00136 * 5 3 2 8 8 N 1.31515 * 119.99743 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99692 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46840 * 60.00444 * 9 7 5 11 11 H 1.48508 * 109.46924 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47245 * 300.00161 * 9 7 5 13 13 N 1.46491 * 109.47626 * 294.99941 * 3 2 1 14 14 C 1.34781 * 120.00352 * 84.99914 * 13 3 2 15 15 O 1.21591 * 119.99309 * 0.02562 * 14 13 3 16 16 N 1.34779 * 120.00306 * 180.02562 * 14 13 3 17 17 C 1.39927 * 119.99566 * 185.32100 * 16 14 13 18 18 C 1.39589 * 119.77523 * 213.58872 * 17 16 14 19 19 C 1.36258 * 120.61596 * 180.02562 * 18 17 16 20 20 C 1.40131 * 119.93736 * 359.96153 * 19 18 17 21 21 C 1.41633 * 133.49152 * 179.70340 * 20 19 18 22 22 N 1.30120 * 108.67468 * 179.90853 * 21 20 19 23 23 N 1.40016 * 109.78423 * 0.38504 * 22 21 20 24 24 C 1.46505 * 125.95070 * 179.75747 * 23 22 21 25 25 C 1.52999 * 109.46775 * 299.99601 * 24 23 22 26 26 C 1.52993 * 109.46972 * 59.99774 * 24 23 22 27 27 C 1.37167 * 108.10149 * 359.75398 * 23 22 21 28 28 C 1.38228 * 119.77928 * 33.57667 * 17 16 14 29 29 H 1.08998 * 109.47288 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47445 * 300.00023 * 1 2 3 31 31 H 1.08998 * 109.47146 * 59.99705 * 1 2 3 32 32 H 1.09003 * 109.46755 * 240.00110 * 2 1 3 33 33 H 1.09002 * 109.46715 * 120.00093 * 2 1 3 34 34 H 0.97002 * 119.99262 * 179.97438 * 8 7 5 35 35 H 0.97007 * 120.00450 * 265.00534 * 13 3 2 36 36 H 0.96999 * 119.99683 * 5.32270 * 16 14 13 37 37 H 1.08001 * 119.69284 * 0.02562 * 18 17 16 38 38 H 1.08002 * 120.03048 * 179.97438 * 19 18 17 39 39 H 1.07998 * 125.66268 * 0.24887 * 21 20 19 40 40 H 1.08997 * 109.46872 * 179.97438 * 24 23 22 41 41 H 1.09007 * 109.46721 * 180.02562 * 25 24 23 42 42 H 1.08996 * 109.47453 * 300.00089 * 25 24 23 43 43 H 1.08997 * 109.47357 * 60.00375 * 25 24 23 44 44 H 1.08999 * 109.47272 * 60.00278 * 26 24 23 45 45 H 1.09007 * 109.46909 * 179.97438 * 26 24 23 46 46 H 1.08997 * 109.47244 * 299.99676 * 26 24 23 47 47 H 1.07998 * 120.16805 * 359.97040 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3365 2.1729 9 14 6.0050 0.8799 1.3812 10 1 6.5004 2.2798 1.3809 11 1 6.3978 0.2154 2.6499 12 1 6.5966 0.1452 0.2344 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6326 -0.4317 16 7 0.0785 3.2667 -2.5187 17 6 -1.1390 3.9513 -2.6023 18 6 -1.8465 3.9629 -3.8056 19 6 -3.0335 4.6245 -3.9063 20 6 -3.5537 5.3006 -2.7946 21 6 -4.7262 6.0656 -2.5798 22 7 -4.7348 6.4772 -1.3455 23 7 -3.5854 6.0242 -0.6868 24 6 -3.2354 6.2868 0.7114 25 6 -3.1134 7.7959 0.9317 26 6 -4.3267 5.7246 1.6245 27 6 -2.8440 5.2916 -1.5785 28 6 -1.6330 4.6113 -1.4929 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8293 -0.0620 2.9495 35 1 2.2720 2.1231 -1.9978 36 1 0.6658 3.2254 -3.2896 37 1 -1.4495 3.4425 -4.6647 38 1 -3.5728 4.6276 -4.8420 39 1 -5.4893 6.2685 -3.3166 40 1 -2.2847 5.8072 0.9442 41 1 -2.8525 7.9913 1.9719 42 1 -2.3359 8.1964 0.2812 43 1 -4.0643 8.2751 0.6991 44 1 -4.4136 4.6495 1.4675 45 1 -4.0661 5.9196 2.6648 46 1 -5.2776 6.2039 1.3918 47 1 -1.0822 4.5989 -0.5640 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184562467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:08 Heat of formation + Delta-G solvation = 35.991066 kcal Electronic energy + Delta-G solvation = -28384.150633 eV Core-core repulsion = 24567.432302 eV Total energy + Delta-G solvation = -3816.718331 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.45415 -41.31706 -38.67527 -37.07232 -36.43605 -35.11220 -34.23650 -32.73753 -32.48591 -29.92811 -29.81585 -28.62677 -28.28366 -25.21920 -24.31479 -23.99538 -22.99628 -22.10179 -21.34981 -20.68589 -19.75224 -18.94470 -17.92439 -17.83410 -17.25211 -16.65535 -16.54087 -16.15885 -15.83089 -15.79167 -15.51990 -15.06643 -14.81370 -14.58178 -14.41956 -14.28347 -14.03725 -13.55086 -13.43287 -13.27980 -13.25977 -13.16813 -12.91701 -12.89320 -12.65252 -12.44229 -12.36441 -12.25734 -12.11686 -12.04188 -11.61381 -11.59656 -11.17913 -11.06805 -11.04209 -10.80190 -10.52977 -9.69328 -8.98133 -8.75144 -8.15689 -6.32863 -0.01621 0.60118 1.39618 1.45815 1.47284 1.54828 1.61614 1.83578 2.26392 2.42822 2.92417 3.13988 3.40925 3.44058 3.72172 3.90822 3.97409 4.04800 4.12559 4.25260 4.31796 4.49310 4.56069 4.57119 4.59106 4.62539 4.71602 4.72559 4.75141 4.86107 4.98302 5.05838 5.11947 5.16243 5.21273 5.31741 5.38125 5.43978 5.51714 5.54636 5.61361 5.68414 5.77180 5.87796 6.00049 6.14317 6.17449 6.30475 6.73850 6.75057 7.26479 7.35735 7.72474 8.89482 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.002976 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.074948 B = 9406.450937 C =10244.931352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.298 3.702 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.714 5.714 14 C 0.691 3.309 15 O -0.611 6.611 16 N -0.676 5.676 17 C 0.214 3.786 18 C -0.181 4.181 19 C -0.007 4.007 20 C -0.214 4.214 21 C 0.080 3.920 22 N -0.282 5.282 23 N -0.407 5.407 24 C 0.154 3.846 25 C -0.148 4.148 26 C -0.151 4.151 27 C 0.124 3.876 28 C -0.181 4.181 29 H 0.042 0.958 30 H 0.022 0.978 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.265 0.735 35 H 0.403 0.597 36 H 0.424 0.576 37 H 0.162 0.838 38 H 0.176 0.824 39 H 0.232 0.768 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.040 0.960 45 H 0.094 0.906 46 H 0.070 0.930 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.463 10.895 -13.254 21.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.194 3.806 4 H 0.016 0.984 5 C -0.587 4.587 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.366 5.366 14 C 0.392 3.608 15 O -0.491 6.491 16 N -0.325 5.325 17 C 0.115 3.885 18 C -0.202 4.202 19 C -0.028 4.028 20 C -0.222 4.222 21 C -0.114 4.114 22 N -0.095 5.095 23 N -0.196 5.196 24 C 0.052 3.948 25 C -0.206 4.206 26 C -0.209 4.209 27 C 0.007 3.993 28 C -0.207 4.207 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.263 0.737 37 H 0.180 0.820 38 H 0.193 0.807 39 H 0.248 0.752 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.112 0.888 46 H 0.089 0.911 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.650 11.439 -11.083 20.976 hybrid contribution 2.107 -0.759 -0.236 2.252 sum -11.543 10.679 -11.318 19.375 Atomic orbital electron populations 1.21632 0.97179 0.98809 1.00061 1.21804 0.93493 0.99324 1.01356 1.18247 0.93413 0.88759 0.80161 0.98420 1.21539 0.91308 1.39044 1.06769 0.90919 1.25746 1.03221 0.94380 0.95015 1.70047 1.37104 1.38222 1.09861 0.85434 0.79172 0.78390 0.77550 1.19754 1.21321 1.18852 1.45444 1.13730 1.58936 1.18505 1.16209 0.82951 0.78628 0.83028 1.90905 1.52652 1.65570 1.39981 1.42572 1.20742 1.54912 1.14277 1.17455 0.85965 0.90585 0.94502 1.20710 0.96611 1.05882 0.97003 1.20575 0.93505 0.91393 0.97343 1.19298 0.98724 1.09336 0.94879 1.24527 0.97508 0.95380 0.94035 1.76510 1.04110 1.20684 1.08200 1.48771 1.16366 1.44512 1.09914 1.21338 0.98886 0.98476 0.76059 1.22051 1.02714 0.92386 1.03425 1.22060 0.98596 1.00260 0.99955 1.18903 0.93930 0.95087 0.91364 1.19784 0.97004 1.03699 1.00222 0.93875 0.95844 0.94012 0.93909 0.90951 0.92607 0.76256 0.73742 0.82012 0.80710 0.75174 0.89980 0.88767 0.93165 0.91227 0.94090 0.88777 0.91107 0.87969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.51 71.98 0.61 -4.85 16 2 C -0.12 -5.89 5.45 30.59 0.17 -5.73 16 3 C 0.30 15.01 2.24 44.25 0.10 15.11 16 4 H 0.00 -0.13 7.58 -2.39 -0.02 -0.14 16 5 C -0.55 -28.38 8.73 25.60 0.22 -28.15 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.91 -51.72 11.29 21.45 0.24 -51.47 16 9 Si 0.97 41.39 29.54 68.60 2.03 43.42 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 13 N -0.71 -28.54 5.03 -461.42 -2.32 -30.86 16 14 C 0.69 27.20 6.86 179.05 1.23 28.42 16 15 O -0.61 -29.32 11.16 -4.00 -0.04 -29.36 16 16 N -0.68 -19.50 5.34 -317.11 -1.69 -21.19 16 17 C 0.21 6.23 6.28 38.17 0.24 6.47 16 18 C -0.18 -3.70 9.87 22.13 0.22 -3.48 16 19 C -0.01 -0.13 10.05 22.27 0.22 0.09 16 20 C -0.21 -5.19 6.17 -21.35 -0.13 -5.32 16 21 C 0.08 1.67 12.05 85.78 1.03 2.70 16 22 N -0.28 -7.45 12.28 -56.21 -0.69 -8.14 16 23 N -0.41 -12.01 3.34 -319.20 -1.07 -13.08 16 24 C 0.15 4.06 3.70 44.99 0.17 4.22 16 25 C -0.15 -3.11 9.45 71.98 0.68 -2.43 16 26 C -0.15 -3.53 9.45 71.98 0.68 -2.85 16 27 C 0.12 3.88 6.88 39.16 0.27 4.15 16 28 C -0.18 -6.29 8.44 22.49 0.19 -6.10 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.02 1.15 7.84 -2.39 -0.02 1.13 16 31 H 0.04 1.86 5.64 -2.39 -0.01 1.85 16 32 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 3.96 5.95 -2.39 -0.01 3.95 16 34 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.40 13.25 8.56 -92.70 -0.79 12.45 16 36 H 0.42 8.58 8.83 -92.71 -0.82 7.76 16 37 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.23 2.39 8.06 -2.91 -0.02 2.36 16 40 H 0.08 2.44 7.48 -2.39 -0.02 2.42 16 41 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 46 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 47 H 0.10 4.24 6.01 -2.91 -0.02 4.23 16 Total: -1.00 -72.74 381.97 2.19 -70.55 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: -0.61 Total: 36.55 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 6.35 Total: 3.59 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -5.53 Total: -124.75 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.04 Total: -29.36 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -72.74 2.19 -70.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184562467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.542 kcal (2) G-P(sol) polarization free energy of solvation -72.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds