Wall clock time and date at job start Tue Mar 31 2020 15:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31514 * 119.99716 * 176.06631 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48496 * 109.47106 * 35.08908 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21587 * 120.00171 * 359.97438 * 14 13 3 16 16 C 1.47603 * 119.99961 * 180.02562 * 14 13 3 17 17 C 1.41816 * 119.98169 * 359.97438 * 16 14 13 18 18 C 1.35634 * 119.60226 * 180.02562 * 17 16 14 19 19 C 1.41050 * 119.40476 * 359.97438 * 18 17 16 20 20 N 1.32178 * 133.26176 * 179.97438 * 19 18 17 21 21 N 1.28648 * 109.57057 * 180.02562 * 20 19 18 22 22 C 1.30726 * 110.34070 * 0.02562 * 21 20 19 23 23 C 1.50699 * 126.27620 * 179.97438 * 22 21 20 24 24 C 1.52998 * 109.46972 * 359.97427 * 23 22 21 25 25 C 1.53002 * 109.46951 * 119.97594 * 23 22 21 26 26 C 1.52995 * 109.47251 * 239.97324 * 23 22 21 27 27 N 1.36256 * 107.45067 * 0.02562 * 22 21 20 28 28 C 1.35847 * 133.52560 * 180.33094 * 27 22 21 29 29 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 31 31 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 32 32 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 33 33 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 34 34 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 36 36 H 1.08003 * 120.19792 * 359.97438 * 17 16 14 37 37 H 1.08001 * 120.29994 * 180.02562 * 18 17 16 38 38 H 1.09007 * 109.47074 * 60.00247 * 24 23 22 39 39 H 1.09005 * 109.46822 * 179.97438 * 24 23 22 40 40 H 1.08992 * 109.47102 * 300.00028 * 24 23 22 41 41 H 1.09000 * 109.47336 * 60.00317 * 25 23 22 42 42 H 1.09001 * 109.46818 * 180.02562 * 25 23 22 43 43 H 1.08998 * 109.47169 * 299.99659 * 25 23 22 44 44 H 1.09005 * 109.47146 * 59.99908 * 26 23 22 45 45 H 1.08997 * 109.47152 * 179.97438 * 26 23 22 46 46 H 1.09000 * 109.47430 * 299.99924 * 26 23 22 47 47 H 1.08000 * 119.80986 * 359.92980 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4620 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7676 1.0283 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3369 2.6301 -0.4618 16 6 0.0724 3.3138 -2.6565 17 6 0.9900 3.3470 -3.7373 18 6 0.6354 3.9511 -4.8988 19 6 -0.6426 4.5368 -5.0128 20 7 -1.2605 5.1802 -5.9882 21 7 -2.4367 5.5264 -5.5987 22 6 -2.6422 5.1333 -4.3690 23 6 -3.8960 5.3498 -3.5614 24 6 -4.9196 6.1138 -4.4037 25 6 -4.4800 3.9957 -3.1535 26 6 -3.5614 6.1595 -2.3072 27 7 -1.5145 4.4929 -3.9509 28 6 -1.1609 3.8833 -2.7895 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8280 1.5270 2.3971 35 1 2.2931 2.1156 -1.9978 36 1 1.9655 2.8947 -3.6359 37 1 1.3252 3.9826 -5.7293 38 1 -5.1580 5.5368 -5.2973 39 1 -5.8266 6.2700 -3.8197 40 1 -4.5035 7.0783 -4.6943 41 1 -3.7508 3.4514 -2.5534 42 1 -5.3871 4.1523 -2.5697 43 1 -4.7184 3.4188 -4.0470 44 1 -3.1452 7.1242 -2.5978 45 1 -4.4683 6.3165 -1.7234 46 1 -2.8322 5.6153 -1.7071 47 1 -1.8587 3.8514 -1.9658 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274494712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:28 Heat of formation + Delta-G solvation = 53.771827 kcal Electronic energy + Delta-G solvation = -28748.924185 eV Core-core repulsion = 24932.976886 eV Total energy + Delta-G solvation = -3815.947299 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.81122 -39.88033 -37.87333 -37.37919 -35.41623 -34.04503 -32.51344 -31.94093 -30.92465 -29.35872 -27.75717 -27.70886 -27.59149 -24.98420 -23.90496 -22.92192 -22.85340 -21.22484 -20.15019 -19.83296 -18.42594 -17.44836 -17.10621 -16.78146 -16.48330 -15.72826 -15.57009 -15.25008 -14.92530 -14.53563 -14.38891 -14.07726 -13.82149 -13.44419 -12.89694 -12.88640 -12.75310 -12.67532 -12.49998 -12.31221 -12.05722 -12.03867 -11.96025 -11.77823 -11.72564 -11.57958 -11.30364 -11.17025 -11.05762 -10.85865 -10.81271 -10.63438 -10.14661 -9.96800 -9.67673 -9.58999 -9.33902 -8.83092 -8.33139 -8.19464 -6.34123 -4.39110 0.28633 0.73013 1.97780 2.34705 2.88546 3.17339 3.26440 3.31940 3.51831 3.59971 3.76493 4.00428 4.22268 4.27072 4.35786 4.46121 4.50376 4.71798 4.72460 4.78407 5.03644 5.19376 5.21211 5.25168 5.37272 5.41572 5.49705 5.54348 5.58647 5.64932 5.74923 5.80539 5.82497 5.86585 5.92231 5.96241 6.01502 6.08513 6.11066 6.49410 6.58732 6.65645 6.78756 6.85541 7.11998 7.18414 7.36902 7.93205 8.34420 8.34994 8.59342 8.69218 9.26534 10.77286 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.003168 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.258974 B = 8836.613428 C = 9497.166547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.238 3.762 4 H 0.053 0.947 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.083 3.917 8 N -0.885 5.885 9 Si 0.871 3.129 10 H -0.273 1.273 11 H -0.258 1.258 12 H -0.285 1.285 13 N -0.687 5.687 14 C 0.553 3.447 15 O -0.545 6.545 16 C -0.141 4.141 17 C -0.064 4.064 18 C -0.084 4.084 19 C 0.199 3.801 20 N -0.292 5.292 21 N -0.246 5.246 22 C 0.158 3.842 23 C 0.022 3.978 24 C -0.129 4.129 25 C -0.149 4.149 26 C -0.150 4.150 27 N -0.388 5.388 28 C 0.125 3.875 29 H 0.032 0.968 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.269 0.731 35 H 0.394 0.606 36 H 0.155 0.845 37 H 0.163 0.837 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.898 5.187 -9.281 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.136 3.864 4 H 0.071 0.929 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.122 4.122 8 N -0.521 5.521 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.182 1.182 12 H -0.211 1.211 13 N -0.335 5.335 14 C 0.337 3.663 15 O -0.426 6.426 16 C -0.148 4.148 17 C -0.089 4.089 18 C -0.105 4.105 19 C -0.050 4.050 20 N -0.137 5.137 21 N -0.084 5.084 22 C -0.105 4.105 23 C 0.019 3.981 24 C -0.187 4.187 25 C -0.207 4.207 26 C -0.208 4.208 27 N -0.067 5.067 28 C 0.000 4.000 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.229 0.771 36 H 0.173 0.827 37 H 0.180 0.820 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -16.625 5.885 -9.942 20.245 hybrid contribution 0.362 -0.483 1.675 1.781 sum -16.262 5.403 -8.267 19.026 Atomic orbital electron populations 1.21915 0.97435 0.99053 1.01914 1.22104 0.93659 0.99252 1.01537 1.19242 0.95790 0.89140 0.82186 0.92922 1.20968 0.88404 1.52820 0.95095 0.90201 1.24914 0.94882 0.93501 0.98878 1.69869 1.09631 1.48054 1.24545 0.86937 0.81311 0.79543 0.82440 1.19819 1.18208 1.21090 1.46541 1.13685 1.54710 1.18559 1.17663 0.83472 0.79430 0.85763 1.90774 1.50944 1.60477 1.40374 1.19910 0.93911 1.03602 0.97383 1.21358 0.99894 0.96562 0.91064 1.20177 0.91915 0.98614 0.99801 1.22476 0.94405 1.02716 0.85390 1.74905 1.00909 1.15929 1.21974 1.74146 1.09502 1.17363 1.07379 1.24860 0.90220 1.01138 0.94251 1.19098 0.87749 0.97431 0.93779 1.21714 0.96996 1.00527 0.99439 1.22020 1.01643 0.94931 1.02110 1.22023 1.02755 1.00162 0.95811 1.43570 1.13624 1.37234 1.12245 1.21780 0.97526 0.92937 0.87777 0.94930 0.93000 0.93332 0.92808 0.91819 0.92089 0.77080 0.82720 0.81991 0.91571 0.91488 0.91556 0.92325 0.90555 0.91808 0.91784 0.90551 0.92303 0.80006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.53 37.16 0.32 -2.33 16 2 C -0.13 -2.51 5.54 -26.73 -0.15 -2.66 16 3 C 0.24 5.12 1.82 -69.08 -0.13 4.99 16 4 H 0.05 1.24 4.92 -51.93 -0.26 0.99 16 5 C -0.54 -13.32 9.05 -34.44 -0.31 -13.63 16 6 H 0.08 2.09 8.06 -52.49 -0.42 1.67 16 7 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 8 N -0.89 -24.90 13.96 55.43 0.77 -24.12 16 9 Si 0.87 20.31 26.69 -169.99 -4.54 15.77 16 10 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.26 -5.84 6.88 56.52 0.39 -5.45 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.69 -12.09 4.98 -55.95 -0.28 -12.37 16 14 C 0.55 9.21 6.36 -12.44 -0.08 9.13 16 15 O -0.55 -10.48 13.41 5.29 0.07 -10.41 16 16 C -0.14 -1.88 5.84 -105.34 -0.61 -2.49 16 17 C -0.06 -0.71 9.53 -39.15 -0.37 -1.08 16 18 C -0.08 -0.92 10.09 -39.45 -0.40 -1.32 16 19 C 0.20 2.74 7.92 -155.95 -1.23 1.51 16 20 N -0.29 -4.54 12.29 31.19 0.38 -4.16 16 21 N -0.25 -3.64 11.50 32.97 0.38 -3.26 16 22 C 0.16 2.00 6.35 -154.11 -0.98 1.02 16 23 C 0.02 0.21 0.89 -155.66 -0.14 0.07 16 24 C -0.13 -1.05 7.97 37.16 0.30 -0.75 16 25 C -0.15 -1.23 8.40 37.16 0.31 -0.92 16 26 C -0.15 -1.26 8.40 37.15 0.31 -0.95 16 27 N -0.39 -5.04 2.94 -59.37 -0.17 -5.22 16 28 C 0.13 1.58 9.13 -16.40 -0.15 1.43 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 1.00 7.88 -51.93 -0.41 0.59 16 31 H 0.05 0.86 5.63 -51.93 -0.29 0.57 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.32 7.90 -51.93 -0.41 0.91 16 34 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.39 5.95 6.62 -40.82 -0.27 5.68 16 36 H 0.16 1.38 6.44 -52.48 -0.34 1.04 16 37 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.52 6.30 -51.93 -0.33 0.19 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.54 6.33 -51.93 -0.33 0.21 16 47 H 0.18 2.14 5.31 -52.49 -0.28 1.86 16 LS Contribution 373.19 15.07 5.62 5.62 Total: -1.00 -30.96 373.19 -7.88 -38.84 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.71 Total: 5.18 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -3.41 Total: -5.88 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 1.08 Total: -49.13 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.54 Total: 15.77 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.96 -7.88 -38.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274494712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.616 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds