Wall clock time and date at job start Tue Mar 31 2020 15:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31514 * 119.99716 * 176.06631 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48496 * 109.47106 * 35.08908 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21587 * 120.00171 * 359.97438 * 14 13 3 16 16 C 1.47603 * 119.99961 * 180.02562 * 14 13 3 17 17 C 1.41816 * 119.98169 * 359.97438 * 16 14 13 18 18 C 1.35634 * 119.60226 * 180.02562 * 17 16 14 19 19 C 1.41050 * 119.40476 * 359.97438 * 18 17 16 20 20 N 1.32178 * 133.26176 * 179.97438 * 19 18 17 21 21 N 1.28648 * 109.57057 * 180.02562 * 20 19 18 22 22 C 1.30726 * 110.34070 * 0.02562 * 21 20 19 23 23 C 1.50699 * 126.27620 * 179.97438 * 22 21 20 24 24 C 1.52998 * 109.46972 * 359.97427 * 23 22 21 25 25 C 1.53002 * 109.46951 * 119.97594 * 23 22 21 26 26 C 1.52995 * 109.47251 * 239.97324 * 23 22 21 27 27 N 1.36256 * 107.45067 * 0.02562 * 22 21 20 28 28 C 1.35847 * 133.52560 * 180.33094 * 27 22 21 29 29 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 31 31 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 32 32 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 33 33 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 34 34 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 36 36 H 1.08003 * 120.19792 * 359.97438 * 17 16 14 37 37 H 1.08001 * 120.29994 * 180.02562 * 18 17 16 38 38 H 1.09007 * 109.47074 * 60.00247 * 24 23 22 39 39 H 1.09005 * 109.46822 * 179.97438 * 24 23 22 40 40 H 1.08992 * 109.47102 * 300.00028 * 24 23 22 41 41 H 1.09000 * 109.47336 * 60.00317 * 25 23 22 42 42 H 1.09001 * 109.46818 * 180.02562 * 25 23 22 43 43 H 1.08998 * 109.47169 * 299.99659 * 25 23 22 44 44 H 1.09005 * 109.47146 * 59.99908 * 26 23 22 45 45 H 1.08997 * 109.47152 * 179.97438 * 26 23 22 46 46 H 1.09000 * 109.47430 * 299.99924 * 26 23 22 47 47 H 1.08000 * 119.80986 * 359.92980 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4620 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7676 1.0283 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3369 2.6301 -0.4618 16 6 0.0724 3.3138 -2.6565 17 6 0.9900 3.3470 -3.7373 18 6 0.6354 3.9511 -4.8988 19 6 -0.6426 4.5368 -5.0128 20 7 -1.2605 5.1802 -5.9882 21 7 -2.4367 5.5264 -5.5987 22 6 -2.6422 5.1333 -4.3690 23 6 -3.8960 5.3498 -3.5614 24 6 -4.9196 6.1138 -4.4037 25 6 -4.4800 3.9957 -3.1535 26 6 -3.5614 6.1595 -2.3072 27 7 -1.5145 4.4929 -3.9509 28 6 -1.1609 3.8833 -2.7895 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8280 1.5270 2.3971 35 1 2.2931 2.1156 -1.9978 36 1 1.9655 2.8947 -3.6359 37 1 1.3252 3.9826 -5.7293 38 1 -5.1580 5.5368 -5.2973 39 1 -5.8266 6.2700 -3.8197 40 1 -4.5035 7.0783 -4.6943 41 1 -3.7508 3.4514 -2.5534 42 1 -5.3871 4.1523 -2.5697 43 1 -4.7184 3.4188 -4.0470 44 1 -3.1452 7.1242 -2.5978 45 1 -4.4683 6.3165 -1.7234 46 1 -2.8322 5.6153 -1.7071 47 1 -1.8587 3.8514 -1.9658 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274494712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:27 Heat of formation + Delta-G solvation = 36.296896 kcal Electronic energy + Delta-G solvation = -28749.681955 eV Core-core repulsion = 24932.976886 eV Total energy + Delta-G solvation = -3816.705069 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.82472 -41.19777 -38.99040 -38.16091 -37.00100 -35.06977 -34.33891 -33.32813 -32.12285 -30.34444 -29.47770 -28.35617 -28.25997 -26.19749 -24.86610 -24.54393 -23.86097 -22.52607 -21.45902 -21.00216 -19.73261 -18.83119 -18.20038 -17.92739 -17.80272 -17.10880 -16.58109 -16.40572 -16.18779 -15.99519 -15.26542 -15.12987 -14.80603 -14.76067 -14.49436 -14.21061 -13.77407 -13.70554 -13.52987 -13.51018 -13.35620 -13.15766 -12.90867 -12.76717 -12.73060 -12.58394 -12.50632 -12.41602 -12.34999 -12.07011 -11.95520 -11.84578 -11.67928 -11.58744 -11.19874 -11.01028 -10.82342 -10.75029 -9.79374 -9.24833 -8.36730 -6.42882 -0.72290 -0.24384 0.97274 1.29143 1.32294 1.37418 1.46202 1.79095 2.25437 2.29344 2.42440 2.81056 3.03433 3.10579 3.35634 3.45719 3.52768 3.63789 3.81468 3.90608 4.05314 4.15491 4.35348 4.44252 4.47389 4.56020 4.56176 4.67384 4.73485 4.75305 4.76991 4.84648 4.87085 4.88674 4.90691 4.95837 5.09460 5.14545 5.20372 5.21602 5.24514 5.28608 5.36761 5.41800 5.57574 5.61400 5.70870 6.11957 6.62743 6.78896 7.19748 7.30579 7.32878 8.77907 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.003168 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.258974 B = 8836.613428 C = 9497.166547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.245 3.755 4 H 0.034 0.966 5 C -0.526 4.526 6 H 0.060 0.940 7 C 0.034 3.966 8 N -0.930 5.930 9 Si 0.921 3.079 10 H -0.275 1.275 11 H -0.248 1.248 12 H -0.283 1.283 13 N -0.688 5.688 14 C 0.558 3.442 15 O -0.570 6.570 16 C -0.147 4.147 17 C -0.057 4.057 18 C -0.079 4.079 19 C 0.189 3.811 20 N -0.324 5.324 21 N -0.273 5.273 22 C 0.164 3.836 23 C 0.020 3.980 24 C -0.125 4.125 25 C -0.146 4.146 26 C -0.147 4.147 27 N -0.392 5.392 28 C 0.134 3.866 29 H 0.055 0.945 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.269 0.731 35 H 0.407 0.593 36 H 0.178 0.822 37 H 0.191 0.809 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.101 0.899 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.101 0.899 46 H 0.049 0.951 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.764 5.090 -9.387 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C 0.141 3.859 4 H 0.052 0.948 5 C -0.564 4.564 6 H 0.078 0.922 7 C -0.166 4.166 8 N -0.569 5.569 9 Si 0.745 3.255 10 H -0.201 1.201 11 H -0.172 1.172 12 H -0.209 1.209 13 N -0.337 5.337 14 C 0.344 3.656 15 O -0.452 6.452 16 C -0.154 4.154 17 C -0.082 4.082 18 C -0.100 4.100 19 C -0.061 4.061 20 N -0.168 5.168 21 N -0.110 5.110 22 C -0.099 4.099 23 C 0.017 3.983 24 C -0.183 4.183 25 C -0.204 4.204 26 C -0.205 4.205 27 N -0.071 5.071 28 C 0.009 3.991 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.244 0.756 36 H 0.195 0.805 37 H 0.208 0.792 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.119 0.881 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.120 0.880 46 H 0.068 0.932 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -18.509 5.801 -10.098 21.868 hybrid contribution 0.889 -0.423 1.622 1.898 sum -17.620 5.379 -8.476 20.279 Atomic orbital electron populations 1.21794 0.95767 1.00412 1.01325 1.22021 0.95065 0.97831 1.01512 1.18947 0.93353 0.90311 0.83290 0.94764 1.21205 0.90202 1.50885 0.94143 0.92170 1.25568 0.95655 0.93901 1.01520 1.69974 1.11185 1.50597 1.25106 0.86146 0.80277 0.79263 0.79771 1.20068 1.17170 1.20863 1.46200 1.14655 1.55066 1.17761 1.17894 0.82552 0.78635 0.86472 1.90763 1.51534 1.61242 1.41633 1.19593 0.94837 1.04442 0.96549 1.21526 1.00277 0.96208 0.90156 1.20502 0.91228 0.97684 1.00609 1.22935 0.95319 1.02534 0.85265 1.74824 1.01565 1.17260 1.23128 1.74087 1.09693 1.18586 1.08630 1.25589 0.90869 0.99572 0.93887 1.19358 0.86604 0.98469 0.93866 1.21709 0.97646 0.99559 0.99386 1.22022 1.02401 0.93915 1.02059 1.22027 1.03720 0.99345 0.95397 1.43658 1.13789 1.37447 1.12210 1.21851 0.97459 0.92075 0.87742 0.92588 0.94407 0.93056 0.91727 0.93019 0.92129 0.75601 0.80472 0.79232 0.92441 0.88740 0.92568 0.93073 0.88057 0.92374 0.92548 0.88026 0.93169 0.79239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 8.53 71.98 0.61 -4.00 16 2 C -0.13 -4.77 5.54 30.59 0.17 -4.60 16 3 C 0.24 10.24 1.82 44.25 0.08 10.32 16 4 H 0.03 1.59 4.92 -2.39 -0.01 1.57 16 5 C -0.53 -26.14 9.05 25.60 0.23 -25.91 16 6 H 0.06 3.17 8.06 -2.91 -0.02 3.15 16 7 C 0.03 1.81 5.47 84.65 0.46 2.27 16 8 N -0.93 -53.12 13.96 21.45 0.30 -52.82 16 9 Si 0.92 41.83 26.69 68.60 1.83 43.66 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.25 -10.76 6.88 99.48 0.68 -10.07 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 N -0.69 -23.13 4.98 -449.19 -2.24 -25.37 16 14 C 0.56 17.66 6.36 86.71 0.55 18.22 16 15 O -0.57 -21.05 13.41 -3.99 -0.05 -21.11 16 16 C -0.15 -3.64 5.84 -20.33 -0.12 -3.76 16 17 C -0.06 -1.13 9.53 22.55 0.21 -0.91 16 18 C -0.08 -1.58 10.09 22.36 0.23 -1.35 16 19 C 0.19 5.00 7.92 134.12 1.06 6.06 16 20 N -0.32 -9.95 12.29 -55.23 -0.68 -10.63 16 21 N -0.27 -8.05 11.50 -49.61 -0.57 -8.62 16 22 C 0.16 4.02 6.35 137.67 0.87 4.89 16 23 C 0.02 0.33 0.89 -52.93 -0.05 0.29 16 24 C -0.13 -1.82 7.97 71.98 0.57 -1.25 16 25 C -0.15 -2.09 8.40 71.98 0.60 -1.49 16 26 C -0.15 -2.20 8.40 71.98 0.60 -1.59 16 27 N -0.39 -9.75 2.94 -341.73 -1.00 -10.75 16 28 C 0.13 3.19 9.13 83.66 0.76 3.95 16 29 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.04 1.38 7.88 -2.39 -0.02 1.36 16 31 H 0.05 1.70 5.63 -2.39 -0.01 1.69 16 32 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.05 2.08 7.90 -2.38 -0.02 2.06 16 34 H 0.27 14.56 8.31 -92.71 -0.77 13.78 16 35 H 0.41 11.55 6.62 -92.71 -0.61 10.94 16 36 H 0.18 2.63 6.44 -2.91 -0.02 2.61 16 37 H 0.19 2.62 8.06 -2.91 -0.02 2.60 16 38 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.09 0.84 8.14 -2.38 -0.02 0.83 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.05 0.81 6.30 -2.39 -0.02 0.80 16 42 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 45 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.05 0.84 6.33 -2.39 -0.02 0.82 16 47 H 0.19 4.17 5.31 -2.91 -0.02 4.16 16 Total: -1.00 -67.34 373.19 4.82 -62.52 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.36 Total: 21.99 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 6.87 Total: 1.14 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -4.19 Total: -108.19 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.05 Total: -21.11 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.83 Total: 43.66 kcal Total: -67.34 4.82 -62.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274494712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.813 kcal (2) G-P(sol) polarization free energy of solvation -67.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds