Wall clock time and date at job start Tue Mar 31 2020 15:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47130 * 2 1 4 4 H 1.08999 * 109.46708 * 54.39597 * 3 2 1 5 5 C 1.52997 * 109.47269 * 174.39749 * 3 2 1 6 6 O 1.42898 * 109.47409 * 55.00011 * 5 3 2 7 7 N 1.46900 * 109.47251 * 294.39639 * 3 2 1 8 8 C 1.46899 * 111.00071 * 153.28612 * 7 3 2 9 9 C 1.50694 * 109.47092 * 185.27391 * 8 7 3 10 10 C 1.35071 * 126.07878 * 103.85185 * 9 8 7 11 11 N 1.35053 * 107.98872 * 180.25787 * 10 9 8 12 12 C 1.46503 * 125.92682 * 179.70863 * 11 10 9 13 13 C 1.50695 * 109.46928 * 125.00153 * 12 11 10 14 14 H 1.07995 * 120.00657 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99870 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99982 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00268 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47119 * 90.00031 * 17 15 13 19 19 H 1.48498 * 109.47462 * 210.00227 * 17 15 13 20 20 H 1.48506 * 109.47186 * 330.00224 * 17 15 13 21 21 N 1.40068 * 108.14158 * 359.72333 * 11 10 9 22 22 C 1.31651 * 108.10349 * 0.02562 * 21 11 10 23 23 C 1.48366 * 126.04457 * 179.97438 * 22 21 11 24 24 C 1.39777 * 120.90149 * 317.26033 * 23 22 21 25 25 C 1.37960 * 119.02063 * 179.97438 * 24 23 22 26 26 N 1.31939 * 120.87896 * 0.02562 * 25 24 23 27 27 C 1.31930 * 122.00286 * 359.97438 * 26 25 24 28 28 C 1.37962 * 120.88413 * 0.02562 * 27 26 25 29 29 H 1.08995 * 109.46793 * 185.06709 * 1 2 3 30 30 H 1.08997 * 109.46791 * 305.06512 * 1 2 3 31 31 H 1.08997 * 109.46768 * 65.06411 * 1 2 3 32 32 H 1.08995 * 109.47268 * 240.00549 * 2 1 3 33 33 H 1.08998 * 109.47301 * 119.99858 * 2 1 3 34 34 H 1.09002 * 109.47073 * 175.00365 * 5 3 2 35 35 H 1.09003 * 109.47137 * 294.99890 * 5 3 2 36 36 H 0.96703 * 114.00258 * 180.02562 * 6 5 3 37 37 H 1.00900 * 111.00287 * 277.24451 * 7 3 2 38 38 H 1.08994 * 109.46979 * 65.27463 * 8 7 3 39 39 H 1.09007 * 109.46957 * 305.27005 * 8 7 3 40 40 H 1.08005 * 126.00597 * 359.97438 * 10 9 8 41 41 H 1.09002 * 109.46389 * 244.99349 * 12 11 10 42 42 H 1.08994 * 109.47087 * 4.99392 * 12 11 10 43 43 H 0.97005 * 120.00360 * 180.02562 * 16 15 13 44 44 H 1.07997 * 120.48703 * 359.95588 * 24 23 22 45 45 H 1.07999 * 119.55783 * 179.97438 * 25 24 23 46 46 H 1.08003 * 119.55657 * 179.97438 * 27 26 25 47 47 H 1.07994 * 120.48908 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9845 0.8356 5 6 3.5635 1.4449 0.1408 6 8 4.1383 0.6374 -0.8885 7 7 1.6639 2.0949 -1.2613 8 6 1.5438 3.5486 -1.0868 9 6 1.0329 4.1671 -2.3624 10 6 -0.2246 4.6069 -2.5852 11 7 -0.2818 5.0851 -3.8469 12 6 -1.4647 5.6537 -4.4979 13 6 -1.1411 7.0329 -5.0117 14 1 -0.1533 7.4449 -4.8674 15 6 -2.1062 7.7689 -5.6660 16 7 -3.3092 7.2674 -5.8412 17 14 -1.7053 9.4787 -6.3023 18 1 -1.1907 9.3818 -7.6919 19 1 -2.9334 10.3134 -6.2863 20 1 -0.6730 10.1005 -5.4345 21 7 0.9859 4.9427 -4.4252 22 6 1.7830 4.3927 -3.5334 23 6 3.2163 4.0630 -3.7289 24 6 3.6625 3.4771 -4.9169 25 6 5.0040 3.1873 -5.0575 26 7 5.8598 3.4555 -4.0898 27 6 5.4797 4.0079 -2.9535 28 6 4.1569 4.3299 -2.7302 29 1 -0.3633 -1.0236 0.0908 30 1 -0.3633 0.5904 0.8411 31 1 -0.3633 0.4333 -0.9319 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9351 2.4658 0.0519 35 1 3.8390 1.0417 1.1154 36 1 5.1039 0.5927 -0.8604 37 1 2.3209 1.8717 -1.9938 38 1 2.5207 3.9675 -0.8457 39 1 0.8472 3.7608 -0.2757 40 1 -1.0420 4.5768 -1.8799 41 1 -1.7627 5.0165 -5.3305 42 1 -2.2807 5.7163 -3.7780 43 1 -3.9881 7.7849 -6.3019 44 1 2.9674 3.2543 -5.7127 45 1 5.3582 2.7341 -5.9716 46 1 6.2139 4.2099 -2.1876 47 1 3.8528 4.7815 -1.7976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278589093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:35 Heat of formation + Delta-G solvation = 51.229520 kcal Electronic energy + Delta-G solvation = -28302.200499 eV Core-core repulsion = 24486.142958 eV Total energy + Delta-G solvation = -3816.057542 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.78268 -39.60616 -38.37008 -35.62922 -34.22492 -32.99886 -32.77467 -31.15132 -30.85779 -29.89446 -28.19154 -27.02617 -24.58375 -24.22991 -23.31599 -23.15514 -22.04860 -20.67024 -19.96013 -19.43882 -17.63946 -16.78271 -16.59166 -16.04854 -15.82801 -15.63783 -15.49177 -15.19588 -14.76413 -14.35445 -14.18643 -14.15088 -13.78080 -13.63086 -13.37127 -13.19577 -12.86072 -12.61708 -12.34875 -12.21757 -12.14869 -11.89498 -11.72252 -11.50213 -11.17946 -11.05132 -10.94714 -10.85438 -10.76003 -10.32693 -10.21354 -10.08912 -9.93264 -9.48579 -9.39603 -9.07816 -8.70410 -8.45990 -8.27243 -7.68120 -6.30541 -4.36089 1.17278 1.24575 2.65923 3.13543 3.20484 3.26542 3.29613 3.40372 3.96852 4.02524 4.26291 4.49969 4.50467 4.69230 4.74317 4.87919 4.93234 5.04644 5.09295 5.14631 5.19557 5.23667 5.29272 5.36391 5.50351 5.59032 5.59859 5.66699 5.71154 5.82505 5.85204 5.94353 6.01726 6.03155 6.12390 6.30163 6.42552 6.45529 6.56066 6.77036 6.83865 6.95736 7.12010 7.23013 7.39331 7.55586 7.62285 7.78872 7.88931 8.02807 8.42842 8.71943 9.30157 10.78376 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.003496 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.734289 B = 8006.866755 C = 9814.136391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C 0.088 3.912 4 H 0.085 0.915 5 C 0.044 3.956 6 O -0.564 6.564 7 N -0.672 5.672 8 C 0.141 3.859 9 C -0.237 4.237 10 C 0.066 3.934 11 N -0.317 5.317 12 C 0.256 3.744 13 C -0.531 4.531 14 H 0.069 0.931 15 C 0.064 3.936 16 N -0.894 5.894 17 Si 0.908 3.092 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.272 1.272 21 N -0.256 5.256 22 C 0.068 3.932 23 C 0.062 3.938 24 C -0.149 4.149 25 C 0.098 3.902 26 N -0.491 5.491 27 C 0.095 3.905 28 C -0.160 4.160 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.376 0.624 37 H 0.350 0.650 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.167 0.833 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.268 0.732 44 H 0.137 0.863 45 H 0.154 0.846 46 H 0.151 0.849 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.062 -11.683 12.852 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.141 4.141 3 C -0.022 4.022 4 H 0.103 0.897 5 C -0.035 4.035 6 O -0.369 6.369 7 N -0.304 5.304 8 C 0.012 3.988 9 C -0.249 4.249 10 C -0.084 4.084 11 N -0.097 5.097 12 C 0.138 3.862 13 C -0.570 4.570 14 H 0.087 0.913 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.735 3.265 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.197 1.197 21 N -0.081 5.081 22 C -0.095 4.095 23 C 0.052 3.948 24 C -0.170 4.170 25 C -0.058 4.058 26 N -0.201 5.201 27 C -0.061 4.061 28 C -0.182 4.182 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.223 0.777 37 H 0.170 0.830 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.184 0.816 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.155 0.845 45 H 0.172 0.828 46 H 0.168 0.832 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.142 -11.482 11.296 20.171 hybrid contribution 0.561 1.297 0.820 1.634 sum 12.703 -10.186 12.116 20.296 Atomic orbital electron populations 1.21663 0.95479 1.00366 1.02579 1.21349 0.96170 0.94993 1.01637 1.21777 0.90291 0.96596 0.93552 0.89709 1.22961 0.96342 0.93781 0.90443 1.86491 1.24996 1.71868 1.53502 1.60542 1.54774 1.08533 1.06547 1.20142 0.98256 0.86520 0.93903 1.19524 0.93791 1.14395 0.97216 1.22218 0.98185 0.98990 0.89002 1.49413 1.08984 1.42344 1.08991 1.19799 0.77820 0.94574 0.93959 1.21221 0.98878 0.98988 1.37881 0.91319 1.24933 0.94620 0.99011 0.95358 1.69913 1.03217 1.38244 1.41793 0.86327 0.77888 0.82844 0.79461 1.20249 1.20915 1.19699 1.77653 0.89800 1.19756 1.20859 1.20271 0.92653 1.03222 0.93401 1.18166 0.89702 0.93688 0.93268 1.22281 0.97385 0.99415 0.97916 1.22617 0.89363 0.96437 0.97381 1.67594 1.38918 1.12247 1.01320 1.22508 0.93903 0.95064 0.94667 1.22132 0.93820 1.02025 1.00186 0.93806 0.93567 0.91325 0.91272 0.92778 0.93894 0.93742 0.77720 0.83039 0.95230 0.90972 0.81580 0.93493 0.92533 0.92235 0.84502 0.82827 0.83193 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.75 37.16 0.36 -1.12 16 2 C -0.10 -1.04 5.31 -26.73 -0.14 -1.18 16 3 C 0.09 0.87 2.41 -67.71 -0.16 0.71 16 4 H 0.08 0.77 7.69 -51.93 -0.40 0.37 16 5 C 0.04 0.38 6.72 37.16 0.25 0.63 16 6 O -0.56 -5.31 12.25 -35.23 -0.43 -5.75 16 7 N -0.67 -8.25 5.79 -107.99 -0.62 -8.88 16 8 C 0.14 1.79 5.55 -4.98 -0.03 1.76 16 9 C -0.24 -3.91 5.65 -104.75 -0.59 -4.51 16 10 C 0.07 1.20 11.32 -17.26 -0.20 1.00 16 11 N -0.32 -6.99 3.67 -62.58 -0.23 -7.22 16 12 C 0.26 6.31 6.26 -5.19 -0.03 6.28 16 13 C -0.53 -14.50 9.23 -34.44 -0.32 -14.82 16 14 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -24.94 13.29 55.43 0.74 -24.20 16 17 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 21 N -0.26 -5.67 12.44 33.42 0.42 -5.25 16 22 C 0.07 1.24 6.72 -82.78 -0.56 0.68 16 23 C 0.06 0.96 5.77 -104.58 -0.60 0.36 16 24 C -0.15 -2.18 9.89 -39.11 -0.39 -2.56 16 25 C 0.10 1.26 11.17 -17.61 -0.20 1.07 16 26 N -0.49 -6.47 10.35 -13.35 -0.14 -6.61 16 27 C 0.10 1.12 11.17 -17.61 -0.20 0.92 16 28 C -0.16 -2.07 8.99 -39.11 -0.35 -2.42 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.84 7.91 -51.93 -0.41 0.43 16 32 H 0.07 0.82 7.75 -51.93 -0.40 0.41 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.04 0.35 7.56 -51.93 -0.39 -0.04 16 35 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.38 2.19 9.12 45.56 0.42 2.60 16 37 H 0.35 4.86 7.96 -39.29 -0.31 4.54 16 38 H 0.03 0.35 5.20 -51.93 -0.27 0.08 16 39 H 0.07 0.84 7.91 -51.92 -0.41 0.43 16 40 H 0.17 2.52 8.06 -52.48 -0.42 2.09 16 41 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.37 8.07 -51.93 -0.42 0.95 16 43 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 45 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 46 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 47 H 0.13 1.54 6.31 -52.49 -0.33 1.21 16 LS Contribution 394.56 15.07 5.95 5.95 Total: -1.00 -30.83 394.56 -8.88 -39.70 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.28 Total: 7.67 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -3.25 Total: -11.56 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.16 Total: -52.17 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.43 Total: -5.75 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.83 -8.88 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278589093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.933 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds