Wall clock time and date at job start Tue Mar 31 2020 15:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47130 * 2 1 4 4 H 1.08999 * 109.46708 * 54.39597 * 3 2 1 5 5 C 1.52997 * 109.47269 * 174.39749 * 3 2 1 6 6 O 1.42898 * 109.47409 * 55.00011 * 5 3 2 7 7 N 1.46900 * 109.47251 * 294.39639 * 3 2 1 8 8 C 1.46899 * 111.00071 * 153.28612 * 7 3 2 9 9 C 1.50694 * 109.47092 * 185.27391 * 8 7 3 10 10 C 1.35071 * 126.07878 * 103.85185 * 9 8 7 11 11 N 1.35053 * 107.98872 * 180.25787 * 10 9 8 12 12 C 1.46503 * 125.92682 * 179.70863 * 11 10 9 13 13 C 1.50695 * 109.46928 * 125.00153 * 12 11 10 14 14 H 1.07995 * 120.00657 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99870 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99982 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00268 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47119 * 90.00031 * 17 15 13 19 19 H 1.48498 * 109.47462 * 210.00227 * 17 15 13 20 20 H 1.48506 * 109.47186 * 330.00224 * 17 15 13 21 21 N 1.40068 * 108.14158 * 359.72333 * 11 10 9 22 22 C 1.31651 * 108.10349 * 0.02562 * 21 11 10 23 23 C 1.48366 * 126.04457 * 179.97438 * 22 21 11 24 24 C 1.39777 * 120.90149 * 317.26033 * 23 22 21 25 25 C 1.37960 * 119.02063 * 179.97438 * 24 23 22 26 26 N 1.31939 * 120.87896 * 0.02562 * 25 24 23 27 27 C 1.31930 * 122.00286 * 359.97438 * 26 25 24 28 28 C 1.37962 * 120.88413 * 0.02562 * 27 26 25 29 29 H 1.08995 * 109.46793 * 185.06709 * 1 2 3 30 30 H 1.08997 * 109.46791 * 305.06512 * 1 2 3 31 31 H 1.08997 * 109.46768 * 65.06411 * 1 2 3 32 32 H 1.08995 * 109.47268 * 240.00549 * 2 1 3 33 33 H 1.08998 * 109.47301 * 119.99858 * 2 1 3 34 34 H 1.09002 * 109.47073 * 175.00365 * 5 3 2 35 35 H 1.09003 * 109.47137 * 294.99890 * 5 3 2 36 36 H 0.96703 * 114.00258 * 180.02562 * 6 5 3 37 37 H 1.00900 * 111.00287 * 277.24451 * 7 3 2 38 38 H 1.08994 * 109.46979 * 65.27463 * 8 7 3 39 39 H 1.09007 * 109.46957 * 305.27005 * 8 7 3 40 40 H 1.08005 * 126.00597 * 359.97438 * 10 9 8 41 41 H 1.09002 * 109.46389 * 244.99349 * 12 11 10 42 42 H 1.08994 * 109.47087 * 4.99392 * 12 11 10 43 43 H 0.97005 * 120.00360 * 180.02562 * 16 15 13 44 44 H 1.07997 * 120.48703 * 359.95588 * 24 23 22 45 45 H 1.07999 * 119.55783 * 179.97438 * 25 24 23 46 46 H 1.08003 * 119.55657 * 179.97438 * 27 26 25 47 47 H 1.07994 * 120.48908 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9845 0.8356 5 6 3.5635 1.4449 0.1408 6 8 4.1383 0.6374 -0.8885 7 7 1.6639 2.0949 -1.2613 8 6 1.5438 3.5486 -1.0868 9 6 1.0329 4.1671 -2.3624 10 6 -0.2246 4.6069 -2.5852 11 7 -0.2818 5.0851 -3.8469 12 6 -1.4647 5.6537 -4.4979 13 6 -1.1411 7.0329 -5.0117 14 1 -0.1533 7.4449 -4.8674 15 6 -2.1062 7.7689 -5.6660 16 7 -3.3092 7.2674 -5.8412 17 14 -1.7053 9.4787 -6.3023 18 1 -1.1907 9.3818 -7.6919 19 1 -2.9334 10.3134 -6.2863 20 1 -0.6730 10.1005 -5.4345 21 7 0.9859 4.9427 -4.4252 22 6 1.7830 4.3927 -3.5334 23 6 3.2163 4.0630 -3.7289 24 6 3.6625 3.4771 -4.9169 25 6 5.0040 3.1873 -5.0575 26 7 5.8598 3.4555 -4.0898 27 6 5.4797 4.0079 -2.9535 28 6 4.1569 4.3299 -2.7302 29 1 -0.3633 -1.0236 0.0908 30 1 -0.3633 0.5904 0.8411 31 1 -0.3633 0.4333 -0.9319 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9351 2.4658 0.0519 35 1 3.8390 1.0417 1.1154 36 1 5.1039 0.5927 -0.8604 37 1 2.3209 1.8717 -1.9938 38 1 2.5207 3.9675 -0.8457 39 1 0.8472 3.7608 -0.2757 40 1 -1.0420 4.5768 -1.8799 41 1 -1.7627 5.0165 -5.3305 42 1 -2.2807 5.7163 -3.7780 43 1 -3.9881 7.7849 -6.3019 44 1 2.9674 3.2543 -5.7127 45 1 5.3582 2.7341 -5.9716 46 1 6.2139 4.2099 -2.1876 47 1 3.8528 4.7815 -1.7976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278589093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:34 Heat of formation + Delta-G solvation = 29.441003 kcal Electronic energy + Delta-G solvation = -28303.145320 eV Core-core repulsion = 24486.142958 eV Total energy + Delta-G solvation = -3817.002363 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.18324 -40.71094 -39.14279 -36.49966 -35.80100 -34.58779 -33.80158 -32.41702 -32.14958 -31.10953 -29.42468 -28.40858 -25.84366 -25.65134 -24.31163 -24.09920 -23.44778 -21.71441 -21.14503 -20.77568 -18.69633 -18.33391 -17.96836 -17.22756 -17.05200 -16.75342 -16.40683 -16.32571 -16.00819 -15.72434 -15.44878 -15.02029 -14.90744 -14.73046 -14.53765 -14.34541 -14.17974 -13.95654 -13.76203 -13.40194 -13.16347 -13.11726 -12.87771 -12.83922 -12.71755 -12.59575 -12.30573 -11.99611 -11.78449 -11.68932 -11.59051 -11.48092 -10.92035 -10.80458 -10.75798 -10.46973 -10.07965 -9.94730 -9.33632 -9.00291 -8.37510 -6.51754 0.03345 0.23470 1.18111 1.34509 1.36251 1.46796 1.77220 1.88626 2.31372 2.92964 2.95028 3.30259 3.45101 3.60505 3.72083 3.83177 3.98088 4.00800 4.12278 4.17879 4.21762 4.30678 4.36238 4.43630 4.57078 4.61304 4.65379 4.68217 4.78227 4.84329 4.85745 4.90757 4.92229 4.97419 5.06508 5.14468 5.22956 5.27348 5.41226 5.46675 5.53601 5.60622 5.71814 5.75200 5.81695 6.22192 6.32792 6.54306 6.59593 6.93318 6.93597 7.02345 7.18570 8.70474 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.003496 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.734289 B = 8006.866755 C = 9814.136391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 C 0.086 3.914 4 H 0.099 0.901 5 C 0.048 3.952 6 O -0.584 6.584 7 N -0.682 5.682 8 C 0.148 3.852 9 C -0.226 4.226 10 C 0.055 3.945 11 N -0.346 5.346 12 C 0.272 3.728 13 C -0.548 4.548 14 H 0.050 0.950 15 C 0.020 3.980 16 N -0.919 5.919 17 Si 0.970 3.030 18 H -0.274 1.274 19 H -0.270 1.270 20 H -0.272 1.272 21 N -0.313 5.313 22 C 0.076 3.924 23 C 0.036 3.964 24 C -0.165 4.165 25 C 0.102 3.898 26 N -0.498 5.498 27 C 0.105 3.895 28 C -0.154 4.154 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.391 0.609 37 H 0.340 0.660 38 H 0.047 0.953 39 H 0.088 0.912 40 H 0.193 0.807 41 H 0.018 0.982 42 H 0.057 0.943 43 H 0.273 0.727 44 H 0.123 0.877 45 H 0.179 0.821 46 H 0.189 0.811 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.301 -11.639 15.139 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.137 4.137 3 C -0.024 4.024 4 H 0.117 0.883 5 C -0.031 4.031 6 O -0.392 6.392 7 N -0.313 5.313 8 C 0.019 3.981 9 C -0.238 4.238 10 C -0.092 4.092 11 N -0.126 5.126 12 C 0.153 3.847 13 C -0.586 4.586 14 H 0.069 0.931 15 C -0.180 4.180 16 N -0.558 5.558 17 Si 0.794 3.206 18 H -0.200 1.200 19 H -0.194 1.194 20 H -0.197 1.197 21 N -0.137 5.137 22 C -0.088 4.088 23 C 0.026 3.974 24 C -0.186 4.186 25 C -0.054 4.054 26 N -0.208 5.208 27 C -0.051 4.051 28 C -0.174 4.174 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.240 0.760 37 H 0.158 0.842 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.209 0.791 41 H 0.036 0.964 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.141 0.859 45 H 0.196 0.804 46 H 0.206 0.794 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 14.396 -11.459 13.607 22.884 hybrid contribution -0.016 1.161 0.168 1.173 sum 14.380 -10.298 13.775 22.418 Atomic orbital electron populations 1.21622 0.95867 1.00686 1.01596 1.21306 0.95745 0.95293 1.01355 1.21873 0.91816 0.96119 0.92610 0.88318 1.22917 0.94965 0.94192 0.91069 1.86463 1.26520 1.72126 1.54064 1.60475 1.55014 1.08209 1.07601 1.20169 0.99272 0.86730 0.91943 1.19983 0.92730 1.12926 0.98155 1.22822 0.99858 0.98479 0.88086 1.49087 1.08527 1.44645 1.10340 1.19292 0.79170 0.93074 0.93156 1.21362 0.98207 1.00367 1.38673 0.93127 1.25721 0.94413 1.02617 0.95277 1.69991 1.03937 1.39669 1.42209 0.85374 0.78061 0.78497 0.78662 1.19995 1.19436 1.19651 1.77567 0.90498 1.22523 1.23108 1.20844 0.93738 1.00992 0.93239 1.18295 0.88744 0.95509 0.94806 1.22287 0.98220 1.00508 0.97584 1.22940 0.88410 0.95721 0.98283 1.67709 1.38844 1.12441 1.01818 1.23098 0.94050 0.93176 0.94805 1.22282 0.93778 1.01491 0.99896 0.93268 0.92602 0.93780 0.93403 0.91084 0.93263 0.91844 0.76014 0.84192 0.93550 0.89381 0.79055 0.96443 0.92549 0.91769 0.85879 0.80433 0.79377 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.75 71.98 0.70 -2.03 16 2 C -0.10 -1.82 5.31 30.60 0.16 -1.66 16 3 C 0.09 1.47 2.41 44.92 0.11 1.58 16 4 H 0.10 1.44 7.69 -2.39 -0.02 1.42 16 5 C 0.05 0.65 6.72 71.98 0.48 1.14 16 6 O -0.58 -9.61 12.25 -148.98 -1.83 -11.43 16 7 N -0.68 -15.70 5.79 -495.59 -2.87 -18.57 16 8 C 0.15 3.44 5.55 85.56 0.47 3.91 16 9 C -0.23 -7.39 5.65 -19.95 -0.11 -7.50 16 10 C 0.06 2.05 11.32 83.47 0.95 2.99 16 11 N -0.35 -15.97 3.67 -351.92 -1.29 -17.26 16 12 C 0.27 14.19 6.26 85.63 0.54 14.72 16 13 C -0.55 -31.12 9.23 25.60 0.24 -30.88 16 14 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 15 C 0.02 1.13 5.46 84.66 0.46 1.59 16 16 N -0.92 -52.38 13.29 21.45 0.28 -52.09 16 17 Si 0.97 43.92 29.54 68.60 2.03 45.94 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 N -0.31 -14.55 12.44 -48.17 -0.60 -15.15 16 22 C 0.08 2.83 6.72 42.51 0.29 3.12 16 23 C 0.04 1.12 5.77 -19.84 -0.11 1.01 16 24 C -0.16 -4.86 9.89 22.58 0.22 -4.64 16 25 C 0.10 2.50 11.17 84.61 0.95 3.44 16 26 N -0.50 -11.83 10.35 -196.14 -2.03 -13.86 16 27 C 0.11 2.12 11.17 84.61 0.95 3.06 16 28 C -0.15 -3.60 8.99 22.57 0.20 -3.39 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 1.07 7.91 -2.39 -0.02 1.05 16 32 H 0.05 1.09 7.75 -2.39 -0.02 1.07 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 0.62 7.56 -2.39 -0.02 0.60 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 36 H 0.39 3.49 9.12 -74.06 -0.68 2.82 16 37 H 0.34 9.08 7.96 -89.69 -0.71 8.37 16 38 H 0.05 0.93 5.20 -2.39 -0.01 0.92 16 39 H 0.09 1.79 7.91 -2.38 -0.02 1.77 16 40 H 0.19 5.76 8.06 -2.91 -0.02 5.74 16 41 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 42 H 0.06 2.88 8.07 -2.39 -0.02 2.86 16 43 H 0.27 14.54 8.31 -92.70 -0.77 13.77 16 44 H 0.12 3.87 8.06 -2.91 -0.02 3.84 16 45 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 46 H 0.19 2.31 8.06 -2.91 -0.02 2.28 16 47 H 0.15 2.95 6.31 -2.91 -0.02 2.93 16 Total: -1.00 -69.44 394.56 -0.21 -69.66 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.40 Total: 26.30 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 6.49 Total: -13.53 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -6.50 Total: -116.93 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -1.83 Total: -11.43 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -69.44 -0.21 -69.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278589093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.097 kcal (2) G-P(sol) polarization free energy of solvation -69.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds