Wall clock time and date at job start Tue Mar 31 2020 15:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46905 * 2 1 4 4 H 1.09001 * 109.47038 * 304.99454 * 3 2 1 5 5 C 1.53005 * 109.47006 * 185.00237 * 3 2 1 6 6 O 1.42903 * 109.46827 * 304.99692 * 5 3 2 7 7 N 1.46890 * 109.47235 * 64.99873 * 3 2 1 8 8 C 1.46908 * 111.00177 * 204.99539 * 7 3 2 9 9 C 1.50696 * 109.47304 * 184.80819 * 8 7 3 10 10 C 1.35067 * 126.07496 * 105.43080 * 9 8 7 11 11 N 1.35053 * 107.98585 * 180.25611 * 10 9 8 12 12 C 1.46505 * 125.92824 * 179.74075 * 11 10 9 13 13 C 1.50698 * 109.46936 * 124.99746 * 12 11 10 14 14 H 1.07994 * 120.00134 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99538 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00373 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99615 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47190 * 60.00241 * 17 15 13 19 19 H 1.48496 * 109.47092 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47331 * 300.00513 * 17 15 13 21 21 N 1.40067 * 108.14140 * 359.76378 * 11 10 9 22 22 C 1.31642 * 108.10428 * 359.97438 * 21 11 10 23 23 C 1.48372 * 126.04256 * 179.97438 * 22 21 11 24 24 C 1.39769 * 120.90028 * 317.68149 * 23 22 21 25 25 C 1.37962 * 119.02212 * 180.02562 * 24 23 22 26 26 N 1.31936 * 120.88053 * 0.02562 * 25 24 23 27 27 C 1.31945 * 122.00191 * 359.97438 * 26 25 24 28 28 C 1.37958 * 120.87927 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47550 * 300.00244 * 1 2 3 30 30 H 1.09001 * 109.47245 * 59.99996 * 1 2 3 31 31 H 1.09000 * 109.47335 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47100 * 240.00382 * 2 1 3 33 33 H 1.08997 * 109.47013 * 119.99562 * 2 1 3 34 34 H 1.08998 * 109.47242 * 64.99615 * 5 3 2 35 35 H 1.08999 * 109.47074 * 184.99973 * 5 3 2 36 36 H 0.96695 * 113.99825 * 179.97438 * 6 5 3 37 37 H 1.00908 * 111.00125 * 81.04770 * 7 3 2 38 38 H 1.09000 * 109.46484 * 64.80751 * 8 7 3 39 39 H 1.08992 * 109.47296 * 304.81390 * 8 7 3 40 40 H 1.07998 * 126.01061 * 359.97438 * 10 9 8 41 41 H 1.09001 * 109.46839 * 244.99985 * 12 11 10 42 42 H 1.09000 * 109.47197 * 4.99995 * 12 11 10 43 43 H 0.97004 * 119.99998 * 179.97438 * 16 15 13 44 44 H 1.07996 * 120.49114 * 0.02562 * 24 23 22 45 45 H 1.08005 * 119.56238 * 179.97438 * 25 24 23 46 46 H 1.07994 * 119.55974 * 179.97438 * 27 26 25 47 47 H 1.08004 * 120.48785 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1258 6 8 4.1293 0.6405 0.9121 7 7 1.6513 2.0993 1.2551 8 6 1.5725 3.5563 1.0845 9 6 1.2882 4.2033 2.4155 10 6 2.1744 4.8835 3.1746 11 7 1.5356 5.2997 4.2894 12 6 2.1309 6.0695 5.3846 13 6 1.3268 7.3235 5.6121 14 1 0.4589 7.5265 5.0023 15 6 1.6985 8.2111 6.5996 16 7 2.7551 7.9636 7.3425 17 14 0.7013 9.7652 6.8821 18 1 -0.6945 9.4005 7.2344 19 1 1.3047 10.5455 7.9921 20 1 0.7011 10.5852 5.6441 21 7 0.2054 4.8671 4.2170 22 6 0.0502 4.2089 3.0876 23 6 -1.2051 3.5782 2.6101 24 6 -2.0255 2.8602 3.4848 25 6 -3.1837 2.2893 2.9992 26 7 -3.5194 2.4137 1.7293 27 6 -2.7731 3.0828 0.8712 28 6 -1.5988 3.6849 1.2733 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8498 1.0377 -1.0961 35 1 3.9355 2.4655 -0.0367 36 1 5.0950 0.5957 0.8937 37 1 2.2852 1.8564 2.0017 38 1 0.7722 3.7973 0.3850 39 1 2.5200 3.9282 0.6947 40 1 3.2126 5.0594 2.9348 41 1 2.1309 5.4678 6.2935 42 1 3.1555 6.3368 5.1258 43 1 3.0168 8.5882 8.0370 44 1 -1.7567 2.7540 4.5253 45 1 -3.8239 1.7322 3.6673 46 1 -3.0854 3.1595 -0.1597 47 1 -0.9930 4.2315 0.5656 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278589096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:39 Heat of formation + Delta-G solvation = 51.298304 kcal Electronic energy + Delta-G solvation = -28234.066767 eV Core-core repulsion = 24418.012208 eV Total energy + Delta-G solvation = -3816.054559 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.75867 -39.49284 -38.38636 -35.63959 -34.19635 -32.96417 -32.78371 -31.03233 -30.80864 -29.86114 -28.19679 -27.03262 -24.55957 -24.18739 -23.31022 -23.02811 -22.01359 -20.58444 -20.03724 -19.42104 -17.66367 -16.76724 -16.64275 -15.90193 -15.72592 -15.56759 -15.37233 -15.21196 -14.77495 -14.35640 -14.20430 -14.09756 -13.69050 -13.51002 -13.42137 -13.15414 -12.91381 -12.58138 -12.31992 -12.24739 -12.12420 -12.01713 -11.67434 -11.34135 -11.14144 -11.03310 -10.93729 -10.86119 -10.74062 -10.33445 -10.20414 -10.06230 -9.96423 -9.42645 -9.29737 -8.92440 -8.70545 -8.45621 -8.23043 -7.72610 -6.31823 -4.37483 1.32606 1.39733 2.61691 3.17080 3.21561 3.25175 3.28750 3.40010 3.98604 4.14089 4.25572 4.47597 4.63608 4.69969 4.79651 4.87778 5.03447 5.05674 5.13276 5.16217 5.26518 5.31377 5.36213 5.41257 5.47497 5.55946 5.60071 5.69205 5.73394 5.92568 5.94168 5.97011 6.03520 6.15336 6.18684 6.29841 6.45905 6.49922 6.55439 6.83267 6.90447 6.94238 7.12570 7.22754 7.37452 7.56733 7.61084 7.77417 7.86783 8.16927 8.42598 8.70468 9.28875 10.77067 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010962 B = 0.003561 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.703256 B = 7860.821427 C = 9862.401215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 C 0.090 3.910 4 H 0.085 0.915 5 C 0.043 3.957 6 O -0.566 6.566 7 N -0.670 5.670 8 C 0.142 3.858 9 C -0.244 4.244 10 C 0.055 3.945 11 N -0.317 5.317 12 C 0.256 3.744 13 C -0.532 4.532 14 H 0.069 0.931 15 C 0.064 3.936 16 N -0.894 5.894 17 Si 0.908 3.092 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.275 1.275 21 N -0.259 5.259 22 C 0.084 3.916 23 C 0.071 3.929 24 C -0.150 4.150 25 C 0.095 3.905 26 N -0.493 5.493 27 C 0.094 3.906 28 C -0.148 4.148 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.377 0.623 37 H 0.350 0.650 38 H 0.073 0.927 39 H 0.028 0.972 40 H 0.164 0.836 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.269 0.731 44 H 0.134 0.866 45 H 0.152 0.848 46 H 0.150 0.850 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.131 -13.145 -16.049 20.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.141 4.141 3 C -0.021 4.021 4 H 0.103 0.897 5 C -0.037 4.037 6 O -0.371 6.371 7 N -0.302 5.302 8 C 0.013 3.987 9 C -0.257 4.257 10 C -0.095 4.095 11 N -0.097 5.097 12 C 0.139 3.861 13 C -0.570 4.570 14 H 0.087 0.913 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.735 3.265 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.200 1.200 21 N -0.083 5.083 22 C -0.079 4.079 23 C 0.061 3.939 24 C -0.171 4.171 25 C -0.061 4.061 26 N -0.203 5.203 27 C -0.062 4.062 28 C -0.169 4.169 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.223 0.777 37 H 0.170 0.830 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.181 0.819 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.152 0.848 45 H 0.169 0.831 46 H 0.168 0.832 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.299 -13.092 -14.882 19.954 hybrid contribution 2.627 1.479 -0.326 3.032 sum 0.328 -11.613 -15.208 19.138 Atomic orbital electron populations 1.21645 0.95360 1.00535 1.02391 1.21341 0.96216 0.94940 1.01587 1.21730 0.90041 0.96551 0.93768 0.89737 1.22983 0.96602 0.93824 0.90268 1.86486 1.25194 1.72198 1.53195 1.60586 1.56104 1.07514 1.06009 1.20139 0.98981 0.86429 0.93137 1.19578 0.93220 1.11983 1.00892 1.22240 0.98869 0.99213 0.89172 1.49414 1.05740 1.38268 1.16272 1.19789 0.93625 0.90348 0.82345 1.21185 1.13062 1.03965 1.18817 0.91318 1.24932 0.95224 0.98694 0.95045 1.69902 1.24903 1.37367 1.21065 0.86379 0.80305 0.81913 0.77908 1.19800 1.20967 1.20006 1.77685 0.96901 1.15607 1.18118 1.20253 0.92925 1.00680 0.94053 1.18041 0.90309 0.92876 0.92704 1.22214 0.95516 0.98356 1.01055 1.22557 0.94573 0.97011 0.92005 1.67580 1.32844 1.16236 1.03619 1.22497 0.91024 0.93695 0.99020 1.22043 0.97968 1.01292 0.95638 0.91283 0.93673 0.93874 0.92827 0.91317 0.93719 0.93812 0.77659 0.83002 0.90910 0.95433 0.81890 0.93494 0.92669 0.92175 0.84808 0.83075 0.83223 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.80 37.16 0.36 -1.13 16 2 C -0.10 -1.03 5.33 -26.73 -0.14 -1.17 16 3 C 0.09 0.87 2.41 -67.72 -0.16 0.70 16 4 H 0.08 0.76 7.86 -51.93 -0.41 0.35 16 5 C 0.04 0.36 6.71 37.16 0.25 0.61 16 6 O -0.57 -5.20 12.24 -35.23 -0.43 -5.63 16 7 N -0.67 -7.98 5.72 -108.00 -0.62 -8.59 16 8 C 0.14 1.77 5.48 -4.97 -0.03 1.75 16 9 C -0.24 -3.98 5.55 -104.76 -0.58 -4.56 16 10 C 0.06 0.98 11.32 -17.26 -0.20 0.79 16 11 N -0.32 -6.93 3.67 -62.58 -0.23 -7.16 16 12 C 0.26 6.28 6.26 -5.19 -0.03 6.25 16 13 C -0.53 -14.48 9.23 -34.44 -0.32 -14.80 16 14 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -24.88 13.29 55.43 0.74 -24.14 16 17 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 N -0.26 -5.73 12.44 33.42 0.42 -5.32 16 22 C 0.08 1.56 6.72 -82.78 -0.56 1.00 16 23 C 0.07 1.14 5.77 -104.58 -0.60 0.54 16 24 C -0.15 -2.30 9.89 -39.11 -0.39 -2.68 16 25 C 0.09 1.29 11.17 -17.61 -0.20 1.10 16 26 N -0.49 -6.96 10.35 -13.34 -0.14 -7.09 16 27 C 0.09 1.19 11.17 -17.61 -0.20 1.00 16 28 C -0.15 -2.02 9.01 -39.11 -0.35 -2.37 16 29 H 0.07 0.88 7.75 -51.93 -0.40 0.48 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16 34 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.04 0.36 7.30 -51.93 -0.38 -0.01 16 36 H 0.38 1.95 9.12 45.56 0.42 2.37 16 37 H 0.35 4.70 7.87 -39.29 -0.31 4.39 16 38 H 0.07 0.86 5.80 -51.93 -0.30 0.56 16 39 H 0.03 0.31 7.26 -51.93 -0.38 -0.06 16 40 H 0.16 2.39 8.06 -52.49 -0.42 1.96 16 41 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 43 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 45 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 46 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 47 H 0.13 1.59 6.27 -52.48 -0.33 1.26 16 LS Contribution 393.95 15.07 5.94 5.94 Total: -1.00 -30.81 393.95 -8.85 -39.66 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.26 Total: 7.56 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -3.24 Total: -11.34 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.17 Total: -52.30 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.43 Total: -5.63 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.81 -8.85 -39.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278589096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.957 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds