Wall clock time and date at job start Tue Mar 31 2020 15:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46905 * 2 1 4 4 H 1.09001 * 109.47038 * 304.99454 * 3 2 1 5 5 C 1.53005 * 109.47006 * 185.00237 * 3 2 1 6 6 O 1.42903 * 109.46827 * 304.99692 * 5 3 2 7 7 N 1.46890 * 109.47235 * 64.99873 * 3 2 1 8 8 C 1.46908 * 111.00177 * 204.99539 * 7 3 2 9 9 C 1.50696 * 109.47304 * 184.80819 * 8 7 3 10 10 C 1.35067 * 126.07496 * 105.43080 * 9 8 7 11 11 N 1.35053 * 107.98585 * 180.25611 * 10 9 8 12 12 C 1.46505 * 125.92824 * 179.74075 * 11 10 9 13 13 C 1.50698 * 109.46936 * 124.99746 * 12 11 10 14 14 H 1.07994 * 120.00134 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99538 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00373 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99615 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47190 * 60.00241 * 17 15 13 19 19 H 1.48496 * 109.47092 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47331 * 300.00513 * 17 15 13 21 21 N 1.40067 * 108.14140 * 359.76378 * 11 10 9 22 22 C 1.31642 * 108.10428 * 359.97438 * 21 11 10 23 23 C 1.48372 * 126.04256 * 179.97438 * 22 21 11 24 24 C 1.39769 * 120.90028 * 317.68149 * 23 22 21 25 25 C 1.37962 * 119.02212 * 180.02562 * 24 23 22 26 26 N 1.31936 * 120.88053 * 0.02562 * 25 24 23 27 27 C 1.31945 * 122.00191 * 359.97438 * 26 25 24 28 28 C 1.37958 * 120.87927 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47550 * 300.00244 * 1 2 3 30 30 H 1.09001 * 109.47245 * 59.99996 * 1 2 3 31 31 H 1.09000 * 109.47335 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47100 * 240.00382 * 2 1 3 33 33 H 1.08997 * 109.47013 * 119.99562 * 2 1 3 34 34 H 1.08998 * 109.47242 * 64.99615 * 5 3 2 35 35 H 1.08999 * 109.47074 * 184.99973 * 5 3 2 36 36 H 0.96695 * 113.99825 * 179.97438 * 6 5 3 37 37 H 1.00908 * 111.00125 * 81.04770 * 7 3 2 38 38 H 1.09000 * 109.46484 * 64.80751 * 8 7 3 39 39 H 1.08992 * 109.47296 * 304.81390 * 8 7 3 40 40 H 1.07998 * 126.01061 * 359.97438 * 10 9 8 41 41 H 1.09001 * 109.46839 * 244.99985 * 12 11 10 42 42 H 1.09000 * 109.47197 * 4.99995 * 12 11 10 43 43 H 0.97004 * 119.99998 * 179.97438 * 16 15 13 44 44 H 1.07996 * 120.49114 * 0.02562 * 24 23 22 45 45 H 1.08005 * 119.56238 * 179.97438 * 25 24 23 46 46 H 1.07994 * 119.55974 * 179.97438 * 27 26 25 47 47 H 1.08004 * 120.48785 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1258 6 8 4.1293 0.6405 0.9121 7 7 1.6513 2.0993 1.2551 8 6 1.5725 3.5563 1.0845 9 6 1.2882 4.2033 2.4155 10 6 2.1744 4.8835 3.1746 11 7 1.5356 5.2997 4.2894 12 6 2.1309 6.0695 5.3846 13 6 1.3268 7.3235 5.6121 14 1 0.4589 7.5265 5.0023 15 6 1.6985 8.2111 6.5996 16 7 2.7551 7.9636 7.3425 17 14 0.7013 9.7652 6.8821 18 1 -0.6945 9.4005 7.2344 19 1 1.3047 10.5455 7.9921 20 1 0.7011 10.5852 5.6441 21 7 0.2054 4.8671 4.2170 22 6 0.0502 4.2089 3.0876 23 6 -1.2051 3.5782 2.6101 24 6 -2.0255 2.8602 3.4848 25 6 -3.1837 2.2893 2.9992 26 7 -3.5194 2.4137 1.7293 27 6 -2.7731 3.0828 0.8712 28 6 -1.5988 3.6849 1.2733 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8498 1.0377 -1.0961 35 1 3.9355 2.4655 -0.0367 36 1 5.0950 0.5957 0.8937 37 1 2.2852 1.8564 2.0017 38 1 0.7722 3.7973 0.3850 39 1 2.5200 3.9282 0.6947 40 1 3.2126 5.0594 2.9348 41 1 2.1309 5.4678 6.2935 42 1 3.1555 6.3368 5.1258 43 1 3.0168 8.5882 8.0370 44 1 -1.7567 2.7540 4.5253 45 1 -3.8239 1.7322 3.6673 46 1 -3.0854 3.1595 -0.1597 47 1 -0.9930 4.2315 0.5656 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278589096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:38 Heat of formation + Delta-G solvation = 29.602919 kcal Electronic energy + Delta-G solvation = -28235.007550 eV Core-core repulsion = 24418.012208 eV Total energy + Delta-G solvation = -3816.995342 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.17348 -40.63686 -39.15242 -36.49776 -35.80455 -34.54203 -33.83334 -32.36336 -32.09802 -31.06910 -29.41611 -28.41501 -25.84305 -25.61178 -24.27593 -24.05732 -23.43131 -21.52590 -21.32424 -20.74483 -18.69580 -18.35853 -18.00602 -17.19035 -16.97570 -16.59751 -16.39203 -16.27999 -16.03853 -15.72365 -15.46869 -15.01078 -14.84272 -14.63787 -14.55686 -14.41587 -14.19326 -13.80886 -13.73331 -13.55390 -13.20774 -13.11743 -12.92956 -12.80908 -12.67698 -12.44143 -12.26867 -11.89965 -11.84311 -11.73685 -11.57004 -11.46185 -10.89230 -10.84132 -10.75208 -10.40073 -9.99456 -9.92337 -9.26083 -9.05233 -8.38041 -6.52098 0.12792 0.32270 1.16326 1.34858 1.37083 1.45611 1.78107 1.89912 2.31251 2.94196 3.02319 3.29904 3.49587 3.65799 3.68875 3.88851 3.98514 4.08044 4.17462 4.21552 4.27590 4.28672 4.34114 4.46260 4.53346 4.62856 4.67424 4.70181 4.80641 4.86725 4.88888 4.91811 4.96407 5.04610 5.09764 5.14192 5.22676 5.26255 5.46788 5.48205 5.54240 5.63289 5.71825 5.81689 5.83483 6.20665 6.34266 6.56287 6.59228 6.92416 6.94234 7.09689 7.18255 8.69769 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010962 B = 0.003561 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.703256 B = 7860.821427 C = 9862.401215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 C 0.088 3.912 4 H 0.099 0.901 5 C 0.046 3.954 6 O -0.587 6.587 7 N -0.677 5.677 8 C 0.150 3.850 9 C -0.231 4.231 10 C 0.049 3.951 11 N -0.345 5.345 12 C 0.272 3.728 13 C -0.549 4.549 14 H 0.051 0.949 15 C 0.021 3.979 16 N -0.919 5.919 17 Si 0.969 3.031 18 H -0.276 1.276 19 H -0.272 1.272 20 H -0.268 1.268 21 N -0.315 5.315 22 C 0.089 3.911 23 C 0.046 3.954 24 C -0.166 4.166 25 C 0.098 3.902 26 N -0.503 5.503 27 C 0.101 3.899 28 C -0.143 4.143 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.393 0.607 37 H 0.340 0.660 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.192 0.808 41 H 0.018 0.982 42 H 0.057 0.943 43 H 0.273 0.727 44 H 0.121 0.879 45 H 0.176 0.824 46 H 0.187 0.813 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.237 -13.367 -18.989 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.136 4.136 3 C -0.021 4.021 4 H 0.117 0.883 5 C -0.034 4.034 6 O -0.395 6.395 7 N -0.308 5.308 8 C 0.021 3.979 9 C -0.244 4.244 10 C -0.099 4.099 11 N -0.125 5.125 12 C 0.153 3.847 13 C -0.587 4.587 14 H 0.069 0.931 15 C -0.180 4.180 16 N -0.558 5.558 17 Si 0.793 3.207 18 H -0.201 1.201 19 H -0.196 1.196 20 H -0.192 1.192 21 N -0.139 5.139 22 C -0.075 4.075 23 C 0.036 3.964 24 C -0.188 4.188 25 C -0.058 4.058 26 N -0.212 5.212 27 C -0.055 4.055 28 C -0.163 4.163 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.242 0.758 37 H 0.158 0.842 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.209 0.791 41 H 0.036 0.964 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.139 0.861 45 H 0.193 0.807 46 H 0.204 0.796 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.651 -13.333 -17.848 22.435 hybrid contribution 2.697 1.409 0.491 3.082 sum 0.046 -11.924 -17.357 21.059 Atomic orbital electron populations 1.21577 0.95727 1.00445 1.01609 1.21286 0.95771 0.95222 1.01279 1.21812 0.91299 0.96089 0.92944 0.88268 1.22947 0.95470 0.94069 0.90889 1.86452 1.26861 1.72401 1.53745 1.60544 1.56280 1.07093 1.06906 1.20154 1.00301 0.86641 0.90813 1.20006 0.91774 1.10664 1.01911 1.22853 1.00337 0.98714 0.88006 1.49086 1.06276 1.40054 1.17105 1.19288 0.93485 0.89310 0.82569 1.21341 1.12931 1.05393 1.19063 0.93117 1.25709 0.96148 1.01516 0.94594 1.69978 1.25949 1.38445 1.21418 0.85446 0.78556 0.78448 0.78291 1.20130 1.19625 1.19245 1.77599 0.97577 1.18082 1.20691 1.20789 0.94640 0.98974 0.93059 1.18199 0.90005 0.94001 0.94176 1.22233 0.96479 0.99435 1.00612 1.22879 0.94043 0.96466 0.92418 1.67685 1.33199 1.16595 1.03762 1.23074 0.90075 0.92054 1.00324 1.22218 0.98473 1.01085 0.94571 0.93816 0.92480 0.93715 0.91208 0.93459 0.91879 0.93529 0.75818 0.84195 0.89664 0.93625 0.79067 0.96398 0.92538 0.91763 0.86088 0.80701 0.79608 0.83296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.80 71.98 0.71 -1.90 16 2 C -0.10 -1.76 5.33 30.59 0.16 -1.59 16 3 C 0.09 1.48 2.41 44.92 0.11 1.59 16 4 H 0.10 1.40 7.86 -2.39 -0.02 1.38 16 5 C 0.05 0.64 6.71 71.98 0.48 1.12 16 6 O -0.59 -9.79 12.24 -148.98 -1.82 -11.61 16 7 N -0.68 -15.02 5.72 -495.59 -2.84 -17.86 16 8 C 0.15 3.40 5.48 85.55 0.47 3.87 16 9 C -0.23 -7.42 5.55 -19.95 -0.11 -7.53 16 10 C 0.05 1.75 11.32 83.47 0.94 2.70 16 11 N -0.35 -15.69 3.67 -351.91 -1.29 -16.98 16 12 C 0.27 14.03 6.26 85.63 0.54 14.56 16 13 C -0.55 -31.00 9.23 25.60 0.24 -30.76 16 14 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 15 C 0.02 1.16 5.46 84.66 0.46 1.62 16 16 N -0.92 -52.05 13.29 21.45 0.28 -51.77 16 17 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 N -0.32 -14.63 12.44 -48.17 -0.60 -15.23 16 22 C 0.09 3.36 6.72 42.52 0.29 3.64 16 23 C 0.05 1.48 5.77 -19.84 -0.11 1.37 16 24 C -0.17 -5.16 9.89 22.57 0.22 -4.94 16 25 C 0.10 2.58 11.17 84.61 0.95 3.52 16 26 N -0.50 -13.11 10.35 -196.13 -2.03 -15.14 16 27 C 0.10 2.28 11.17 84.61 0.95 3.22 16 28 C -0.14 -3.59 9.01 22.57 0.20 -3.38 16 29 H 0.04 1.06 7.75 -2.39 -0.02 1.04 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 1.06 7.73 -2.39 -0.02 1.04 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.05 0.64 7.30 -2.39 -0.02 0.62 16 36 H 0.39 3.40 9.12 -74.06 -0.68 2.73 16 37 H 0.34 8.84 7.87 -89.69 -0.71 8.14 16 38 H 0.09 1.74 5.80 -2.39 -0.01 1.73 16 39 H 0.05 0.89 7.26 -2.39 -0.02 0.87 16 40 H 0.19 5.44 8.06 -2.91 -0.02 5.41 16 41 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 2.83 8.07 -2.39 -0.02 2.81 16 43 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 44 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 45 H 0.18 3.59 8.06 -2.91 -0.02 3.56 16 46 H 0.19 2.77 8.06 -2.91 -0.02 2.75 16 47 H 0.15 3.15 6.27 -2.91 -0.02 3.13 16 Total: -1.00 -69.03 393.95 -0.17 -69.20 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: -0.39 Total: 26.52 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 6.49 Total: -12.88 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -6.47 Total: -116.98 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -1.82 Total: -11.61 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -69.03 -0.17 -69.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278589096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.802 kcal (2) G-P(sol) polarization free energy of solvation -69.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds