Wall clock time and date at job start Tue Mar 31 2020 15:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47284 * 2 1 4 4 N 1.46501 * 109.47287 * 120.00020 * 2 1 3 5 5 N 1.40080 * 126.04105 * 300.02409 * 4 2 1 6 6 C 1.30837 * 108.20750 * 179.97438 * 5 4 2 7 7 C 1.39869 * 108.20188 * 0.02562 * 6 5 4 8 8 C 1.34951 * 126.03602 * 120.30454 * 4 2 1 9 9 C 1.50703 * 126.12882 * 0.02562 * 8 4 2 10 10 N 1.46495 * 109.47243 * 275.20083 * 9 8 4 11 11 C 1.39245 * 120.00339 * 179.97438 * 10 9 8 12 12 N 1.32301 * 119.72985 * 359.97438 * 11 10 9 13 13 C 1.32022 * 121.67649 * 179.97438 * 12 11 10 14 14 C 1.38010 * 120.95368 * 0.02562 * 13 12 11 15 15 C 1.38852 * 119.37136 * 359.97438 * 14 13 12 16 16 C 1.38711 * 118.45707 * 359.72742 * 15 14 13 17 17 O 1.36008 * 120.49790 * 180.26802 * 16 15 14 18 18 C 1.42897 * 116.99757 * 0.28501 * 17 16 15 19 19 C 1.53007 * 109.46758 * 180.02562 * 18 17 16 20 20 C 1.50704 * 109.46845 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00041 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99771 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00023 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99965 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47103 * 59.99796 * 24 22 20 26 26 H 1.48498 * 109.47035 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.46813 * 299.99824 * 24 22 20 28 28 H 1.09004 * 109.47133 * 299.99798 * 1 2 3 29 29 H 1.09002 * 109.47446 * 59.99791 * 1 2 3 30 30 H 1.09001 * 109.47422 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46676 * 239.99927 * 2 1 3 32 32 H 1.08998 * 109.47383 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47050 * 300.00451 * 3 2 1 34 34 H 1.09004 * 109.46870 * 60.00041 * 3 2 1 35 35 H 1.08001 * 125.89643 * 179.97438 * 6 5 4 36 36 H 1.08002 * 126.03560 * 179.97438 * 7 6 5 37 37 H 1.09006 * 109.46992 * 35.20116 * 9 8 4 38 38 H 1.08994 * 109.47530 * 155.19575 * 9 8 4 39 39 H 0.97005 * 120.00023 * 359.97438 * 10 9 8 40 40 H 1.07999 * 119.52271 * 180.02562 * 13 12 11 41 41 H 1.08007 * 120.31520 * 179.97438 * 14 13 12 42 42 H 1.07997 * 120.77609 * 180.02562 * 15 14 13 43 43 H 1.08998 * 109.47882 * 300.00084 * 18 17 16 44 44 H 1.09000 * 109.47199 * 60.00609 * 18 17 16 45 45 H 1.08998 * 109.47017 * 300.00029 * 19 18 17 46 46 H 1.09000 * 109.47129 * 60.00125 * 19 18 17 47 47 H 0.97001 * 120.00115 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7588 -0.3243 2.5231 6 6 2.3625 -1.1788 3.3087 7 6 3.0255 -2.1150 2.5085 8 6 2.8021 -1.7890 1.2143 9 6 3.3312 -2.5231 0.0092 10 7 2.3251 -3.4783 -0.4613 11 6 2.5885 -4.2770 -1.5711 12 7 3.7491 -4.1683 -2.1970 13 6 4.0393 -4.9065 -3.2524 14 6 3.1358 -5.8256 -3.7460 15 6 1.9049 -5.9739 -3.1209 16 6 1.6288 -5.1899 -2.0104 17 8 0.4382 -5.3049 -1.3630 18 6 -0.4895 -6.2629 -1.8765 19 6 -1.7609 -6.2485 -1.0253 20 6 -2.7390 -7.2592 -1.5664 21 1 -2.4800 -7.8521 -2.4311 22 6 -3.9651 -7.4262 -0.9581 23 7 -4.2807 -6.7038 0.0946 24 14 -5.1779 -8.6784 -1.6293 25 1 -4.5679 -10.0316 -1.5845 26 1 -6.4117 -8.6646 -0.8031 27 1 -5.5178 -8.3350 -3.0334 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 2.3516 -1.1633 4.3885 36 1 3.6151 -2.9482 2.8613 37 1 3.5523 -1.8083 -0.7835 38 1 4.2414 -3.0580 0.2801 39 1 1.4753 -3.5545 0.0003 40 1 4.9977 -4.7895 -3.7364 41 1 3.3839 -6.4239 -4.6104 42 1 1.1810 -6.6865 -3.4878 43 1 -0.7397 -6.0104 -2.9069 44 1 -0.0415 -7.2560 -1.8442 45 1 -1.5110 -6.5008 0.0052 46 1 -2.2087 -5.2553 -1.0578 47 1 -5.1430 -6.8215 0.5227 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280097988.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:11 Heat of formation + Delta-G solvation = 68.039763 kcal Electronic energy + Delta-G solvation = -27769.423051 eV Core-core repulsion = 23954.094456 eV Total energy + Delta-G solvation = -3815.328595 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.42642 -40.35535 -37.75403 -35.95008 -35.71615 -33.44873 -31.93433 -31.32393 -30.23817 -29.80515 -28.65069 -27.48660 -25.97038 -25.15344 -23.10579 -22.77925 -22.43043 -20.81407 -20.69004 -19.46421 -18.14836 -17.42893 -16.94229 -16.39356 -16.08358 -15.60197 -15.21037 -15.00908 -14.88879 -14.60422 -14.35952 -14.31543 -14.07817 -13.82744 -13.54194 -13.17787 -13.03684 -12.81664 -12.43240 -12.39032 -12.35933 -12.12882 -11.87730 -11.83933 -11.57688 -11.45103 -11.02457 -10.95056 -10.65175 -10.62466 -10.23195 -9.98393 -9.77332 -9.57381 -9.40184 -9.28329 -8.97405 -8.62947 -8.48613 -7.21318 -6.14302 -4.19465 1.51159 1.51414 1.65651 2.35984 2.72368 3.25663 3.30351 3.31693 3.44845 3.67444 4.04252 4.27018 4.33309 4.36814 4.68114 4.72200 4.77863 4.92842 5.01633 5.06306 5.17417 5.22127 5.29446 5.34346 5.41428 5.45631 5.53707 5.55783 5.60203 5.65364 5.66427 5.89539 5.93601 5.96699 6.03026 6.08468 6.15695 6.32701 6.55782 6.60194 6.63094 6.91599 7.12793 7.32977 7.48026 7.57733 7.65041 7.76313 7.97940 8.18604 8.29639 8.85705 9.45199 10.97028 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009173 B = 0.003231 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.740038 B = 8663.092603 C =10656.507059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.153 3.847 3 C -0.159 4.159 4 N -0.353 5.353 5 N -0.286 5.286 6 C 0.040 3.960 7 C -0.251 4.251 8 C 0.062 3.938 9 C 0.205 3.795 10 N -0.719 5.719 11 C 0.380 3.620 12 N -0.516 5.516 13 C 0.090 3.910 14 C -0.189 4.189 15 C -0.137 4.137 16 C 0.042 3.958 17 O -0.316 6.316 18 C 0.068 3.932 19 C 0.028 3.972 20 C -0.529 4.529 21 H 0.057 0.943 22 C 0.062 3.938 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.182 0.818 36 H 0.147 0.853 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.417 0.583 40 H 0.152 0.848 41 H 0.129 0.871 42 H 0.139 0.861 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.027 0.973 46 H 0.026 0.974 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.171 11.501 -1.961 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.051 3.949 3 C -0.217 4.217 4 N -0.137 5.137 5 N -0.107 5.107 6 C -0.145 4.145 7 C -0.281 4.281 8 C -0.065 4.065 9 C 0.079 3.921 10 N -0.358 5.358 11 C 0.143 3.857 12 N -0.235 5.235 13 C -0.064 4.064 14 C -0.212 4.212 15 C -0.164 4.164 16 C -0.011 4.011 17 O -0.229 6.229 18 C -0.006 4.006 19 C -0.009 4.009 20 C -0.567 4.567 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.526 5.526 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.199 0.801 36 H 0.165 0.835 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.255 0.745 40 H 0.169 0.831 41 H 0.147 0.853 42 H 0.157 0.843 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.045 0.955 46 H 0.045 0.955 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.890 13.458 -1.510 21.649 hybrid contribution -1.161 -2.333 -0.586 2.670 sum 15.730 11.125 -2.096 19.380 Atomic orbital electron populations 1.22130 0.92801 1.03694 1.03319 1.21367 0.96027 0.93736 0.83735 1.22126 1.01566 0.94571 1.03436 1.48854 1.37990 1.21340 1.05492 1.77298 1.23135 1.23779 0.86537 1.23832 0.96923 0.93631 1.00139 1.21316 1.10699 1.05047 0.91059 1.21101 0.97345 0.91107 0.96987 1.19540 0.91455 0.90395 0.90692 1.44334 1.19842 1.41202 1.30381 1.17706 0.88752 0.90012 0.89256 1.67154 1.17193 1.27841 1.11307 1.22104 0.99234 0.92794 0.92309 1.21631 0.94648 1.02217 1.02715 1.21542 0.98661 1.00531 0.95653 1.19506 0.88500 0.98039 0.95030 1.86106 1.22928 1.59867 1.54002 1.23313 0.89574 0.88898 0.98812 1.19099 0.88207 0.98291 0.95342 1.20918 1.00148 1.21326 1.14300 0.92427 1.24980 0.98114 0.96144 0.94830 1.69960 1.22492 1.39799 1.20396 0.86552 0.80297 0.81606 0.78961 1.20067 1.21083 1.20081 0.91124 0.90666 0.91481 0.88060 0.92188 0.90683 0.91096 0.80063 0.83485 0.91167 0.89493 0.74498 0.83084 0.85334 0.84301 0.93249 0.93195 0.95459 0.95538 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.45 37.16 0.35 -1.39 16 2 C 0.15 1.59 3.65 -67.93 -0.25 1.34 16 3 C -0.16 -1.37 9.45 37.16 0.35 -1.02 16 4 N -0.35 -4.33 3.28 -50.69 -0.17 -4.50 16 5 N -0.29 -3.82 12.43 30.62 0.38 -3.44 16 6 C 0.04 0.47 12.03 -17.36 -0.21 0.26 16 7 C -0.25 -2.91 10.72 -40.01 -0.43 -3.34 16 8 C 0.06 0.75 6.30 -82.26 -0.52 0.23 16 9 C 0.20 2.35 5.64 -5.20 -0.03 2.32 16 10 N -0.72 -9.97 5.70 -61.44 -0.35 -10.32 16 11 C 0.38 5.82 7.50 -154.71 -1.16 4.66 16 12 N -0.52 -7.24 9.57 -12.29 -0.12 -7.36 16 13 C 0.09 1.09 11.17 -17.55 -0.20 0.90 16 14 C -0.19 -2.32 10.10 -39.44 -0.40 -2.72 16 15 C -0.14 -2.04 9.14 -39.18 -0.36 -2.40 16 16 C 0.04 0.70 6.72 -38.92 -0.26 0.44 16 17 O -0.32 -6.12 9.38 -19.77 -0.19 -6.30 16 18 C 0.07 1.40 4.70 37.16 0.17 1.58 16 19 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 20 C -0.53 -14.47 9.11 -34.44 -0.31 -14.79 16 21 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 24 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 1.01 6.80 -51.93 -0.35 0.65 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.07 0.77 7.34 -51.93 -0.38 0.39 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.42 6.33 7.81 -40.82 -0.32 6.01 16 40 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 41 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.14 1.98 6.44 -52.49 -0.34 1.64 16 43 H 0.05 0.97 7.69 -51.93 -0.40 0.57 16 44 H 0.05 0.98 7.71 -51.93 -0.40 0.58 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 396.32 15.07 5.97 5.97 Total: -1.00 -31.21 396.32 -9.47 -40.68 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.23 Total: 6.41 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -3.49 Total: -11.75 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.48 Total: -51.00 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.19 Total: -6.30 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.21 -9.47 -40.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280097988.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.721 kcal (2) G-P(sol) polarization free energy of solvation -31.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds