Wall clock time and date at job start Tue Mar 31 2020 15:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47284 * 2 1 4 4 N 1.46501 * 109.47287 * 120.00020 * 2 1 3 5 5 N 1.40080 * 126.04105 * 300.02409 * 4 2 1 6 6 C 1.30837 * 108.20750 * 179.97438 * 5 4 2 7 7 C 1.39869 * 108.20188 * 0.02562 * 6 5 4 8 8 C 1.34951 * 126.03602 * 120.30454 * 4 2 1 9 9 C 1.50703 * 126.12882 * 0.02562 * 8 4 2 10 10 N 1.46495 * 109.47243 * 275.20083 * 9 8 4 11 11 C 1.39245 * 120.00339 * 179.97438 * 10 9 8 12 12 N 1.32301 * 119.72985 * 359.97438 * 11 10 9 13 13 C 1.32022 * 121.67649 * 179.97438 * 12 11 10 14 14 C 1.38010 * 120.95368 * 0.02562 * 13 12 11 15 15 C 1.38852 * 119.37136 * 359.97438 * 14 13 12 16 16 C 1.38711 * 118.45707 * 359.72742 * 15 14 13 17 17 O 1.36008 * 120.49790 * 180.26802 * 16 15 14 18 18 C 1.42897 * 116.99757 * 0.28501 * 17 16 15 19 19 C 1.53007 * 109.46758 * 180.02562 * 18 17 16 20 20 C 1.50704 * 109.46845 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00041 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99771 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00023 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99965 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47103 * 59.99796 * 24 22 20 26 26 H 1.48498 * 109.47035 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.46813 * 299.99824 * 24 22 20 28 28 H 1.09004 * 109.47133 * 299.99798 * 1 2 3 29 29 H 1.09002 * 109.47446 * 59.99791 * 1 2 3 30 30 H 1.09001 * 109.47422 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46676 * 239.99927 * 2 1 3 32 32 H 1.08998 * 109.47383 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47050 * 300.00451 * 3 2 1 34 34 H 1.09004 * 109.46870 * 60.00041 * 3 2 1 35 35 H 1.08001 * 125.89643 * 179.97438 * 6 5 4 36 36 H 1.08002 * 126.03560 * 179.97438 * 7 6 5 37 37 H 1.09006 * 109.46992 * 35.20116 * 9 8 4 38 38 H 1.08994 * 109.47530 * 155.19575 * 9 8 4 39 39 H 0.97005 * 120.00023 * 359.97438 * 10 9 8 40 40 H 1.07999 * 119.52271 * 180.02562 * 13 12 11 41 41 H 1.08007 * 120.31520 * 179.97438 * 14 13 12 42 42 H 1.07997 * 120.77609 * 180.02562 * 15 14 13 43 43 H 1.08998 * 109.47882 * 300.00084 * 18 17 16 44 44 H 1.09000 * 109.47199 * 60.00609 * 18 17 16 45 45 H 1.08998 * 109.47017 * 300.00029 * 19 18 17 46 46 H 1.09000 * 109.47129 * 60.00125 * 19 18 17 47 47 H 0.97001 * 120.00115 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7588 -0.3243 2.5231 6 6 2.3625 -1.1788 3.3087 7 6 3.0255 -2.1150 2.5085 8 6 2.8021 -1.7890 1.2143 9 6 3.3312 -2.5231 0.0092 10 7 2.3251 -3.4783 -0.4613 11 6 2.5885 -4.2770 -1.5711 12 7 3.7491 -4.1683 -2.1970 13 6 4.0393 -4.9065 -3.2524 14 6 3.1358 -5.8256 -3.7460 15 6 1.9049 -5.9739 -3.1209 16 6 1.6288 -5.1899 -2.0104 17 8 0.4382 -5.3049 -1.3630 18 6 -0.4895 -6.2629 -1.8765 19 6 -1.7609 -6.2485 -1.0253 20 6 -2.7390 -7.2592 -1.5664 21 1 -2.4800 -7.8521 -2.4311 22 6 -3.9651 -7.4262 -0.9581 23 7 -4.2807 -6.7038 0.0946 24 14 -5.1779 -8.6784 -1.6293 25 1 -4.5679 -10.0316 -1.5845 26 1 -6.4117 -8.6646 -0.8031 27 1 -5.5178 -8.3350 -3.0334 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 2.3516 -1.1633 4.3885 36 1 3.6151 -2.9482 2.8613 37 1 3.5523 -1.8083 -0.7835 38 1 4.2414 -3.0580 0.2801 39 1 1.4753 -3.5545 0.0003 40 1 4.9977 -4.7895 -3.7364 41 1 3.3839 -6.4239 -4.6104 42 1 1.1810 -6.6865 -3.4878 43 1 -0.7397 -6.0104 -2.9069 44 1 -0.0415 -7.2560 -1.8442 45 1 -1.5110 -6.5008 0.0052 46 1 -2.2087 -5.2553 -1.0578 47 1 -5.1430 -6.8215 0.5227 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280097988.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:10 Heat of formation + Delta-G solvation = 50.179084 kcal Electronic energy + Delta-G solvation = -27770.197548 eV Core-core repulsion = 23954.094456 eV Total energy + Delta-G solvation = -3816.103092 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.34570 -41.50570 -39.10800 -36.94442 -36.58875 -35.49089 -32.94492 -32.75852 -31.73663 -30.78576 -29.76561 -28.28947 -27.22008 -26.75111 -24.28707 -23.88390 -23.59481 -22.33692 -21.70023 -20.38481 -19.43420 -18.71527 -18.11331 -17.86527 -17.43974 -17.04109 -16.54867 -16.14526 -15.92915 -15.86598 -15.45676 -15.28312 -15.15589 -14.91506 -14.54917 -14.35508 -14.21081 -14.09991 -13.90112 -13.58067 -13.29131 -13.19765 -13.17850 -12.96441 -12.73792 -12.72281 -12.42590 -12.41768 -12.31306 -11.73920 -11.63372 -11.55604 -11.46129 -11.21613 -10.62572 -10.60866 -10.31521 -10.15074 -9.55369 -8.33850 -8.27388 -6.41199 0.39153 0.45533 0.71085 1.40225 1.43755 1.49597 1.51752 1.79901 2.22293 2.40806 2.47191 2.96928 3.07255 3.37768 3.44964 3.71691 3.87991 3.94916 3.99352 4.05510 4.09456 4.13159 4.25238 4.27410 4.38818 4.50774 4.58433 4.60790 4.63145 4.68168 4.72370 4.74011 4.76340 4.86068 5.08591 5.10845 5.14031 5.19934 5.29395 5.32480 5.46346 5.57632 5.69112 5.72927 5.98556 6.04941 6.10864 6.21449 6.59881 6.72613 6.73632 7.20030 7.29231 8.85141 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009173 B = 0.003231 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.740038 B = 8663.092603 C =10656.507059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 C -0.150 4.150 4 N -0.358 5.358 5 N -0.315 5.315 6 C 0.035 3.965 7 C -0.259 4.259 8 C 0.054 3.946 9 C 0.214 3.786 10 N -0.721 5.721 11 C 0.373 3.627 12 N -0.521 5.521 13 C 0.100 3.900 14 C -0.185 4.185 15 C -0.139 4.139 16 C -0.001 4.001 17 O -0.336 6.336 18 C 0.088 3.912 19 C 0.032 3.968 20 C -0.547 4.547 21 H 0.071 0.929 22 C 0.003 3.997 23 N -0.930 5.930 24 Si 0.973 3.027 25 H -0.264 1.264 26 H -0.284 1.284 27 H -0.263 1.263 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.039 0.961 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.208 0.792 36 H 0.162 0.838 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.407 0.593 40 H 0.192 0.808 41 H 0.164 0.836 42 H 0.141 0.859 43 H 0.059 0.941 44 H 0.058 0.942 45 H -0.004 1.004 46 H -0.004 1.004 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.853 10.804 -4.100 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 C -0.208 4.208 4 N -0.142 5.142 5 N -0.137 5.137 6 C -0.149 4.149 7 C -0.289 4.289 8 C -0.074 4.074 9 C 0.089 3.911 10 N -0.358 5.358 11 C 0.136 3.864 12 N -0.240 5.240 13 C -0.055 4.055 14 C -0.207 4.207 15 C -0.165 4.165 16 C -0.052 4.052 17 O -0.250 6.250 18 C 0.014 3.986 19 C -0.005 4.005 20 C -0.585 4.585 21 H 0.089 0.911 22 C -0.195 4.195 23 N -0.569 5.569 24 Si 0.797 3.203 25 H -0.188 1.188 26 H -0.209 1.209 27 H -0.188 1.188 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.058 0.942 31 H 0.124 0.876 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.225 0.775 36 H 0.179 0.821 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.243 0.757 40 H 0.209 0.791 41 H 0.181 0.819 42 H 0.159 0.841 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.014 0.986 46 H 0.014 0.986 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 18.606 12.780 -3.655 22.867 hybrid contribution -1.538 -2.077 0.046 2.585 sum 17.068 10.704 -3.609 20.468 Atomic orbital electron populations 1.22084 0.93448 1.02008 1.03881 1.21536 0.95521 0.94900 0.83388 1.22064 1.01584 0.93180 1.03950 1.49036 1.38011 1.21550 1.05618 1.77252 1.24212 1.24987 0.87248 1.24342 0.96119 0.93064 1.01414 1.21607 1.10845 1.05449 0.91026 1.21282 0.97505 0.91196 0.97435 1.19555 0.90892 0.90014 0.90634 1.44416 1.19809 1.41449 1.30129 1.17831 0.88936 0.89978 0.89662 1.67286 1.16306 1.28398 1.12017 1.22870 1.00462 0.91183 0.91022 1.22002 0.93267 1.02237 1.03244 1.21773 0.99871 0.99878 0.94997 1.19773 0.88028 1.00557 0.96862 1.86023 1.24192 1.59796 1.54977 1.22806 0.88132 0.89878 0.97801 1.18911 0.90643 0.96302 0.94646 1.21376 1.00747 1.21641 1.14704 0.91066 1.26013 1.00313 0.98250 0.94960 1.70114 1.23160 1.41712 1.21962 0.85375 0.77400 0.78976 0.78570 1.18825 1.20922 1.18780 0.92088 0.88543 0.94185 0.87590 0.91979 0.88462 0.92215 0.77506 0.82053 0.90439 0.88814 0.75687 0.79111 0.81871 0.84111 0.92295 0.92353 0.98575 0.98550 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.45 71.98 0.68 -2.84 16 2 C 0.15 3.08 3.65 44.99 0.16 3.25 16 3 C -0.15 -2.47 9.45 71.98 0.68 -1.79 16 4 N -0.36 -8.96 3.28 -314.30 -1.03 -9.99 16 5 N -0.32 -8.58 12.43 -57.02 -0.71 -9.29 16 6 C 0.04 0.82 12.03 85.24 1.02 1.85 16 7 C -0.26 -5.99 10.72 21.99 0.24 -5.75 16 8 C 0.05 1.30 6.30 41.40 0.26 1.56 16 9 C 0.21 4.83 5.64 85.63 0.48 5.32 16 10 N -0.72 -20.34 5.70 -348.30 -1.98 -22.32 16 11 C 0.37 11.24 7.50 133.11 1.00 12.24 16 12 N -0.52 -13.53 9.57 -192.78 -1.84 -15.37 16 13 C 0.10 2.06 11.17 84.61 0.95 3.00 16 14 C -0.19 -3.92 10.10 22.36 0.23 -3.69 16 15 C -0.14 -3.91 9.14 22.53 0.21 -3.70 16 16 C 0.00 -0.03 6.72 22.70 0.15 0.12 16 17 O -0.34 -13.53 9.38 -93.65 -0.88 -14.40 16 18 C 0.09 3.73 4.70 71.98 0.34 4.07 16 19 C 0.03 1.73 5.34 29.85 0.16 1.89 16 20 C -0.55 -30.43 9.11 25.60 0.23 -30.20 16 21 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 22 C 0.00 0.19 5.46 84.65 0.46 0.65 16 23 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 24 Si 0.97 43.06 29.54 68.60 2.03 45.09 16 25 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 28 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.11 2.09 6.80 -2.38 -0.02 2.07 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.21 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 37 H 0.08 1.63 7.34 -2.38 -0.02 1.61 16 38 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.41 13.08 7.81 -92.70 -0.72 12.36 16 40 H 0.19 2.37 8.06 -2.91 -0.02 2.35 16 41 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 42 H 0.14 3.82 6.44 -2.91 -0.02 3.80 16 43 H 0.06 2.33 7.69 -2.39 -0.02 2.31 16 44 H 0.06 2.32 7.71 -2.39 -0.02 2.30 16 45 H 0.00 -0.25 8.14 -2.39 -0.02 -0.26 16 46 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 47 H 0.27 15.14 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -69.74 396.32 3.36 -66.38 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.25 Total: 30.02 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 7.25 Total: -14.03 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -5.28 Total: -113.05 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.88 Total: -14.40 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -69.74 3.36 -66.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280097988.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.557 kcal (2) G-P(sol) polarization free energy of solvation -69.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds