Wall clock time and date at job start Tue Mar 31 2020 15:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47025 * 2 1 4 4 H 1.08996 * 109.46765 * 55.00336 * 3 2 1 5 5 O 1.42897 * 109.47028 * 294.99667 * 3 2 1 6 6 C 1.53001 * 109.46375 * 174.99924 * 3 2 1 7 7 N 1.46900 * 109.46827 * 184.99836 * 6 3 2 8 8 C 1.46900 * 111.00316 * 180.02562 * 7 6 3 9 9 C 1.50694 * 109.47300 * 184.74920 * 8 7 6 10 10 C 1.35070 * 126.07593 * 105.37628 * 9 8 7 11 11 N 1.35053 * 107.98399 * 180.15007 * 10 9 8 12 12 C 1.46509 * 125.92745 * 179.87352 * 11 10 9 13 13 C 1.50700 * 109.47084 * 124.70987 * 12 11 10 14 14 H 1.08002 * 120.00589 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99661 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00374 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99961 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46926 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47250 * 119.99871 * 17 15 13 20 20 H 1.48497 * 109.47561 * 240.00215 * 17 15 13 21 21 N 1.40073 * 108.14443 * 359.60280 * 11 10 9 22 22 C 1.31650 * 108.10049 * 0.24823 * 21 11 10 23 23 C 1.48370 * 126.03757 * 180.02562 * 22 21 11 24 24 C 1.39768 * 120.90293 * 137.13899 * 23 22 21 25 25 C 1.37958 * 119.01986 * 179.72594 * 24 23 22 26 26 N 1.31941 * 120.87738 * 0.55412 * 25 24 23 27 27 C 1.31928 * 122.00843 * 359.71621 * 26 25 24 28 28 C 1.37964 * 120.87533 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.46599 * 300.00242 * 1 2 3 30 30 H 1.09004 * 109.47104 * 59.99275 * 1 2 3 31 31 H 1.08992 * 109.47550 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46599 * 239.99758 * 2 1 3 33 33 H 1.08999 * 109.46718 * 120.00502 * 2 1 3 34 34 H 0.96693 * 114.00694 * 300.00329 * 5 3 2 35 35 H 1.08995 * 109.47318 * 65.00430 * 6 3 2 36 36 H 1.09002 * 109.47575 * 304.99799 * 6 3 2 37 37 H 1.00903 * 110.99886 * 56.04527 * 7 6 3 38 38 H 1.08998 * 109.47054 * 64.74372 * 8 7 6 39 39 H 1.08995 * 109.46958 * 304.74789 * 8 7 6 40 40 H 1.08000 * 126.00882 * 359.97438 * 10 9 8 41 41 H 1.08991 * 109.46944 * 244.70959 * 12 11 10 42 42 H 1.09001 * 109.46712 * 4.70888 * 12 11 10 43 43 H 0.97001 * 120.00241 * 179.97438 * 16 15 13 44 44 H 1.07997 * 120.48943 * 359.97438 * 24 23 22 45 45 H 1.08003 * 119.56116 * 180.24792 * 25 24 23 46 46 H 1.07994 * 119.56271 * 180.02562 * 27 26 25 47 47 H 1.08004 * 120.48381 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6621 2.0814 -1.2211 6 6 3.5649 1.4442 0.1257 7 7 4.0447 2.8274 0.2461 8 6 5.5080 2.8683 0.3685 9 6 5.9527 4.2883 0.6064 10 6 6.3804 4.8018 1.7802 11 7 6.6820 6.1031 1.5809 12 6 7.1804 7.0352 2.5954 13 6 8.4727 7.6490 2.1220 14 1 8.8822 7.3722 1.1617 15 6 9.1329 8.5631 2.9153 16 7 8.6352 8.8990 4.0854 17 14 10.7353 9.3235 2.3289 18 1 11.0787 8.7826 0.9892 19 1 10.5809 10.7980 2.2421 20 1 11.8197 8.9950 3.2887 21 7 6.4415 6.4053 0.2345 22 6 6.0017 5.3147 -0.3573 23 6 5.6249 5.1887 -1.7868 24 6 6.0085 4.0719 -2.5346 25 6 5.6321 3.9920 -3.8594 26 7 4.9297 4.9562 -4.4231 27 6 4.5522 6.0290 -3.7544 28 6 4.8818 6.1864 -2.4240 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0142 1.6543 -2.0139 35 1 4.0030 0.9835 -0.7596 36 1 3.8571 0.8799 1.0114 37 1 3.6033 3.2969 1.0226 38 1 5.9600 2.4950 -0.5505 39 1 5.8201 2.2447 1.2062 40 1 6.4636 4.2667 2.7146 41 1 6.4435 7.8213 2.7598 42 1 7.3533 6.4984 3.5282 43 1 9.0999 9.5419 4.6437 44 1 6.5877 3.2813 -2.0808 45 1 5.9204 3.1310 -4.4442 46 1 3.9777 6.7941 -4.2551 47 1 4.5692 7.0670 -1.8825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291755381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:27 Heat of formation + Delta-G solvation = 48.410617 kcal Electronic energy + Delta-G solvation = -27630.250847 eV Core-core repulsion = 23814.071069 eV Total energy + Delta-G solvation = -3816.179779 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.76123 -39.48833 -38.39585 -35.57941 -33.99808 -32.99117 -32.86741 -31.17292 -30.94657 -30.29254 -28.22376 -26.97395 -24.56859 -24.19870 -23.16825 -22.61531 -22.02945 -21.57357 -20.06463 -19.47231 -17.03281 -16.72837 -16.44492 -16.11342 -15.86752 -15.69818 -15.43595 -15.07814 -14.85287 -14.59962 -14.36039 -14.00265 -13.67820 -13.51107 -13.39024 -13.27802 -13.06617 -12.50943 -12.45249 -12.28307 -12.15203 -12.07290 -11.81276 -11.66860 -11.28401 -11.23247 -11.04712 -10.96090 -10.90235 -10.34372 -10.15443 -9.99499 -9.88685 -9.41515 -9.29537 -8.91674 -8.72200 -8.47670 -8.31206 -7.74666 -6.32823 -4.38269 1.33169 1.40584 2.59420 3.14965 3.17737 3.25781 3.30254 3.39861 4.03749 4.15406 4.25182 4.40770 4.59438 4.64205 4.77406 4.80888 4.83080 5.01848 5.04400 5.08469 5.19634 5.25622 5.30945 5.40405 5.41417 5.43945 5.47896 5.57181 5.60700 5.63731 5.70769 5.91958 5.94965 5.95933 5.97849 6.13747 6.18254 6.43275 6.55179 6.82253 6.90853 6.93355 7.03040 7.18955 7.39532 7.60229 7.61874 7.76405 7.85214 8.17528 8.41190 8.70320 9.28279 10.76164 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012222 B = 0.002986 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.408016 B = 9374.420675 C =11050.000447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.156 4.156 3 C 0.110 3.890 4 H 0.094 0.906 5 O -0.546 6.546 6 C 0.027 3.973 7 N -0.673 5.673 8 C 0.144 3.856 9 C -0.246 4.246 10 C 0.055 3.945 11 N -0.318 5.318 12 C 0.255 3.745 13 C -0.530 4.530 14 H 0.070 0.930 15 C 0.063 3.937 16 N -0.894 5.894 17 Si 0.908 3.092 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.281 1.281 21 N -0.258 5.258 22 C 0.085 3.915 23 C 0.071 3.929 24 C -0.149 4.149 25 C 0.093 3.907 26 N -0.493 5.493 27 C 0.096 3.904 28 C -0.149 4.149 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.370 0.630 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.341 0.659 38 H 0.073 0.927 39 H 0.029 0.971 40 H 0.165 0.835 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.268 0.732 44 H 0.131 0.869 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.334 -17.412 -7.941 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C 0.050 3.950 4 H 0.112 0.888 5 O -0.351 6.351 6 C -0.103 4.103 7 N -0.304 5.304 8 C 0.015 3.985 9 C -0.259 4.259 10 C -0.095 4.095 11 N -0.097 5.097 12 C 0.138 3.862 13 C -0.569 4.569 14 H 0.088 0.912 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.735 3.265 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.207 1.207 21 N -0.083 5.083 22 C -0.078 4.078 23 C 0.061 3.939 24 C -0.170 4.170 25 C -0.063 4.063 26 N -0.203 5.203 27 C -0.060 4.060 28 C -0.170 4.170 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.217 0.783 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.159 0.841 38 H 0.091 0.909 39 H 0.047 0.953 40 H 0.182 0.818 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.149 0.851 45 H 0.168 0.832 46 H 0.170 0.830 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.455 -15.483 -8.894 21.214 hybrid contribution 1.436 -1.003 1.766 2.488 sum -10.019 -16.487 -7.127 20.567 Atomic orbital electron populations 1.21691 0.95076 1.01284 1.02508 1.22227 0.97206 0.97396 1.02580 1.21918 0.92532 0.92103 0.88427 0.88812 1.86623 1.76215 1.57152 1.15078 1.22696 0.95943 0.90795 1.00858 1.60440 1.05793 1.14078 1.50123 1.20094 0.87124 0.91540 0.99726 1.19580 1.16658 0.96801 0.92874 1.22256 1.01038 0.86849 0.99353 1.49434 1.44911 1.08100 1.07279 1.19808 0.95684 0.87454 0.83243 1.21260 1.05616 1.25081 1.04903 0.91216 1.24940 0.98462 0.95936 0.94643 1.69919 1.39655 1.33305 1.10345 0.86271 0.82235 0.79055 0.78979 1.19488 1.20569 1.20706 1.77697 1.19454 1.21341 0.89793 1.20263 1.02640 0.92094 0.92786 1.18035 0.93329 0.93230 0.89349 1.22032 1.01433 0.98424 0.95132 1.22491 0.94609 0.96958 0.92247 1.67568 1.11490 1.01865 1.39391 1.22551 0.97106 0.95078 0.91293 1.22209 0.99016 0.99680 0.96076 0.92791 0.91975 0.93000 0.91650 0.91300 0.78320 0.90953 0.94901 0.84064 0.90866 0.95263 0.81777 0.93460 0.92634 0.92279 0.85107 0.83212 0.83039 0.84800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.81 37.16 0.36 -0.67 16 2 C -0.16 -1.04 5.61 -26.73 -0.15 -1.19 16 3 C 0.11 0.94 3.14 -26.73 -0.08 0.86 16 4 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 5 O -0.55 -5.74 12.82 -35.23 -0.45 -6.19 16 6 C 0.03 0.24 5.32 -3.82 -0.02 0.22 16 7 N -0.67 -7.82 6.47 -115.06 -0.74 -8.57 16 8 C 0.14 1.80 5.71 -4.98 -0.03 1.77 16 9 C -0.25 -4.02 5.56 -104.76 -0.58 -4.61 16 10 C 0.06 0.98 11.32 -17.26 -0.20 0.78 16 11 N -0.32 -6.93 3.67 -62.58 -0.23 -7.16 16 12 C 0.26 6.24 6.26 -5.19 -0.03 6.21 16 13 C -0.53 -14.42 9.23 -34.44 -0.32 -14.74 16 14 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -24.84 13.29 55.43 0.74 -24.11 16 17 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 21 N -0.26 -5.75 12.44 33.42 0.42 -5.33 16 22 C 0.09 1.59 6.72 -82.78 -0.56 1.04 16 23 C 0.07 1.16 5.77 -104.58 -0.60 0.55 16 24 C -0.15 -2.05 9.01 -39.11 -0.35 -2.40 16 25 C 0.09 1.19 11.17 -17.61 -0.20 1.00 16 26 N -0.49 -7.06 10.35 -13.35 -0.14 -7.20 16 27 C 0.10 1.34 11.17 -17.61 -0.20 1.14 16 28 C -0.15 -2.31 9.89 -39.11 -0.39 -2.70 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.48 7.82 -51.93 -0.41 0.08 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.37 2.87 9.05 45.56 0.41 3.28 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.34 4.16 8.66 -39.29 -0.34 3.82 16 38 H 0.07 0.87 5.81 -51.93 -0.30 0.57 16 39 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 40 H 0.16 2.36 8.06 -52.49 -0.42 1.94 16 41 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.13 1.60 6.30 -52.49 -0.33 1.26 16 45 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 46 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 47 H 0.13 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -31.23 398.34 -9.29 -40.52 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.43 Total: 7.05 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -3.44 Total: -11.14 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.04 Total: -52.36 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.45 Total: -6.19 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.23 -9.29 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291755381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.932 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds