Wall clock time and date at job start Tue Mar 31 2020 15:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47025 * 2 1 4 4 H 1.08996 * 109.46765 * 55.00336 * 3 2 1 5 5 O 1.42897 * 109.47028 * 294.99667 * 3 2 1 6 6 C 1.53001 * 109.46375 * 174.99924 * 3 2 1 7 7 N 1.46900 * 109.46827 * 184.99836 * 6 3 2 8 8 C 1.46900 * 111.00316 * 180.02562 * 7 6 3 9 9 C 1.50694 * 109.47300 * 184.74920 * 8 7 6 10 10 C 1.35070 * 126.07593 * 105.37628 * 9 8 7 11 11 N 1.35053 * 107.98399 * 180.15007 * 10 9 8 12 12 C 1.46509 * 125.92745 * 179.87352 * 11 10 9 13 13 C 1.50700 * 109.47084 * 124.70987 * 12 11 10 14 14 H 1.08002 * 120.00589 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99661 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00374 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99961 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46926 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47250 * 119.99871 * 17 15 13 20 20 H 1.48497 * 109.47561 * 240.00215 * 17 15 13 21 21 N 1.40073 * 108.14443 * 359.60280 * 11 10 9 22 22 C 1.31650 * 108.10049 * 0.24823 * 21 11 10 23 23 C 1.48370 * 126.03757 * 180.02562 * 22 21 11 24 24 C 1.39768 * 120.90293 * 137.13899 * 23 22 21 25 25 C 1.37958 * 119.01986 * 179.72594 * 24 23 22 26 26 N 1.31941 * 120.87738 * 0.55412 * 25 24 23 27 27 C 1.31928 * 122.00843 * 359.71621 * 26 25 24 28 28 C 1.37964 * 120.87533 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.46599 * 300.00242 * 1 2 3 30 30 H 1.09004 * 109.47104 * 59.99275 * 1 2 3 31 31 H 1.08992 * 109.47550 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46599 * 239.99758 * 2 1 3 33 33 H 1.08999 * 109.46718 * 120.00502 * 2 1 3 34 34 H 0.96693 * 114.00694 * 300.00329 * 5 3 2 35 35 H 1.08995 * 109.47318 * 65.00430 * 6 3 2 36 36 H 1.09002 * 109.47575 * 304.99799 * 6 3 2 37 37 H 1.00903 * 110.99886 * 56.04527 * 7 6 3 38 38 H 1.08998 * 109.47054 * 64.74372 * 8 7 6 39 39 H 1.08995 * 109.46958 * 304.74789 * 8 7 6 40 40 H 1.08000 * 126.00882 * 359.97438 * 10 9 8 41 41 H 1.08991 * 109.46944 * 244.70959 * 12 11 10 42 42 H 1.09001 * 109.46712 * 4.70888 * 12 11 10 43 43 H 0.97001 * 120.00241 * 179.97438 * 16 15 13 44 44 H 1.07997 * 120.48943 * 359.97438 * 24 23 22 45 45 H 1.08003 * 119.56116 * 180.24792 * 25 24 23 46 46 H 1.07994 * 119.56271 * 180.02562 * 27 26 25 47 47 H 1.08004 * 120.48381 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6621 2.0814 -1.2211 6 6 3.5649 1.4442 0.1257 7 7 4.0447 2.8274 0.2461 8 6 5.5080 2.8683 0.3685 9 6 5.9527 4.2883 0.6064 10 6 6.3804 4.8018 1.7802 11 7 6.6820 6.1031 1.5809 12 6 7.1804 7.0352 2.5954 13 6 8.4727 7.6490 2.1220 14 1 8.8822 7.3722 1.1617 15 6 9.1329 8.5631 2.9153 16 7 8.6352 8.8990 4.0854 17 14 10.7353 9.3235 2.3289 18 1 11.0787 8.7826 0.9892 19 1 10.5809 10.7980 2.2421 20 1 11.8197 8.9950 3.2887 21 7 6.4415 6.4053 0.2345 22 6 6.0017 5.3147 -0.3573 23 6 5.6249 5.1887 -1.7868 24 6 6.0085 4.0719 -2.5346 25 6 5.6321 3.9920 -3.8594 26 7 4.9297 4.9562 -4.4231 27 6 4.5522 6.0290 -3.7544 28 6 4.8818 6.1864 -2.4240 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0142 1.6543 -2.0139 35 1 4.0030 0.9835 -0.7596 36 1 3.8571 0.8799 1.0114 37 1 3.6033 3.2969 1.0226 38 1 5.9600 2.4950 -0.5505 39 1 5.8201 2.2447 1.2062 40 1 6.4636 4.2667 2.7146 41 1 6.4435 7.8213 2.7598 42 1 7.3533 6.4984 3.5282 43 1 9.0999 9.5419 4.6437 44 1 6.5877 3.2813 -2.0808 45 1 5.9204 3.1310 -4.4442 46 1 3.9777 6.7941 -4.2551 47 1 4.5692 7.0670 -1.8825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291755381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:26 Heat of formation + Delta-G solvation = 26.121498 kcal Electronic energy + Delta-G solvation = -27631.217376 eV Core-core repulsion = 23814.071069 eV Total energy + Delta-G solvation = -3817.146307 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.17787 -40.63913 -39.11309 -36.61132 -35.65838 -34.44297 -33.62045 -32.51041 -32.18416 -31.54388 -29.53466 -28.30757 -25.85231 -25.58282 -24.25360 -23.69388 -23.16635 -22.24683 -21.47928 -20.81278 -18.71557 -18.17725 -17.43119 -17.13365 -16.98208 -16.80061 -16.58696 -16.29228 -15.88408 -15.82030 -15.59913 -15.15561 -14.82743 -14.62653 -14.58663 -14.28107 -14.13292 -14.02659 -13.73320 -13.62305 -13.15258 -12.98298 -12.91211 -12.81134 -12.66901 -12.57800 -12.42934 -12.22312 -11.80855 -11.78440 -11.61983 -11.52993 -10.90320 -10.75953 -10.68264 -10.40619 -9.99700 -9.93424 -9.29934 -9.09648 -8.38903 -6.52652 0.12380 0.32074 1.14992 1.32827 1.35460 1.47603 1.77441 1.88406 2.30673 2.93340 3.01951 3.27153 3.50178 3.66874 3.74279 3.85611 3.90646 4.08388 4.20015 4.20841 4.23548 4.25572 4.28575 4.37138 4.47225 4.60548 4.64246 4.67784 4.79158 4.84403 4.88254 4.93717 4.95836 4.99553 5.03624 5.09428 5.12609 5.19059 5.36836 5.42877 5.46374 5.53879 5.70669 5.80793 5.83182 6.16113 6.26425 6.48022 6.58937 6.93015 7.01205 7.09379 7.17830 8.69303 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012222 B = 0.002986 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.408016 B = 9374.420675 C =11050.000447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.112 3.888 4 H 0.080 0.920 5 O -0.570 6.570 6 C 0.032 3.968 7 N -0.685 5.685 8 C 0.152 3.848 9 C -0.234 4.234 10 C 0.050 3.950 11 N -0.346 5.346 12 C 0.272 3.728 13 C -0.547 4.547 14 H 0.049 0.951 15 C 0.020 3.980 16 N -0.919 5.919 17 Si 0.969 3.031 18 H -0.276 1.276 19 H -0.274 1.274 20 H -0.267 1.267 21 N -0.316 5.316 22 C 0.089 3.911 23 C 0.045 3.955 24 C -0.144 4.144 25 C 0.101 3.899 26 N -0.503 5.503 27 C 0.098 3.902 28 C -0.166 4.166 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.381 0.619 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.335 0.665 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.195 0.805 41 H 0.019 0.981 42 H 0.058 0.942 43 H 0.273 0.727 44 H 0.149 0.851 45 H 0.189 0.811 46 H 0.176 0.824 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.995 -20.050 -9.200 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.053 3.947 4 H 0.098 0.902 5 O -0.376 6.376 6 C -0.097 4.097 7 N -0.316 5.316 8 C 0.022 3.978 9 C -0.247 4.247 10 C -0.098 4.098 11 N -0.126 5.126 12 C 0.153 3.847 13 C -0.585 4.585 14 H 0.068 0.932 15 C -0.181 4.181 16 N -0.558 5.558 17 Si 0.794 3.206 18 H -0.201 1.201 19 H -0.199 1.199 20 H -0.192 1.192 21 N -0.140 5.140 22 C -0.075 4.075 23 C 0.035 3.965 24 C -0.165 4.165 25 C -0.055 4.055 26 N -0.213 5.213 27 C -0.058 4.058 28 C -0.187 4.187 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.229 0.771 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.153 0.847 38 H 0.102 0.898 39 H 0.066 0.934 40 H 0.212 0.788 41 H 0.037 0.963 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.167 0.833 45 H 0.206 0.794 46 H 0.193 0.807 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.130 -18.149 -10.158 23.590 hybrid contribution 1.230 -0.272 2.055 2.411 sum -9.900 -18.421 -8.103 22.428 Atomic orbital electron populations 1.21691 0.95517 1.01740 1.01680 1.22156 0.96727 0.96094 1.03643 1.21913 0.92433 0.92988 0.87413 0.90181 1.86592 1.76717 1.58146 1.16135 1.22716 0.95853 0.89232 1.01891 1.60413 1.05133 1.16009 1.50005 1.20104 0.87801 0.88873 1.00976 1.20022 1.14873 0.98274 0.91488 1.22891 1.00219 0.85476 1.01214 1.49115 1.47314 1.09183 1.06996 1.19306 0.93885 0.87395 0.84124 1.21385 1.06921 1.25943 1.04239 0.93223 1.25713 1.01501 0.96135 0.94715 1.69989 1.40929 1.33757 1.11118 0.85333 0.78711 0.78268 0.78320 1.20104 1.19905 1.19177 1.77610 1.22162 1.23822 0.90410 1.20803 1.00702 0.91801 0.94150 1.18216 0.94817 0.94844 0.88615 1.22221 1.01083 0.97752 0.95426 1.23099 0.92998 0.97393 0.92015 1.67678 1.11881 1.02207 1.39548 1.22878 0.96722 0.95622 0.90538 1.22234 1.00036 0.99472 0.97000 0.93376 0.93085 0.91886 0.90462 0.90259 0.77092 0.89861 0.93563 0.84737 0.89781 0.93420 0.78782 0.96324 0.92428 0.91769 0.83316 0.79396 0.80680 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.81 71.98 0.71 -1.15 16 2 C -0.15 -1.62 5.61 30.60 0.17 -1.45 16 3 C 0.11 1.72 3.14 30.60 0.10 1.82 16 4 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 5 O -0.57 -11.18 12.82 -148.98 -1.91 -13.09 16 6 C 0.03 0.48 5.32 86.30 0.46 0.94 16 7 N -0.68 -14.59 6.47 -517.95 -3.35 -17.94 16 8 C 0.15 3.40 5.71 85.56 0.49 3.89 16 9 C -0.23 -7.49 5.56 -19.95 -0.11 -7.60 16 10 C 0.05 1.78 11.32 83.47 0.94 2.72 16 11 N -0.35 -15.70 3.67 -351.90 -1.29 -17.00 16 12 C 0.27 13.94 6.26 85.63 0.54 14.48 16 13 C -0.55 -30.84 9.23 25.60 0.24 -30.60 16 14 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 15 C 0.02 1.10 5.46 84.65 0.46 1.56 16 16 N -0.92 -51.92 13.29 21.45 0.28 -51.64 16 17 Si 0.97 43.81 29.54 68.60 2.03 45.83 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 21 N -0.32 -14.70 12.44 -48.16 -0.60 -15.30 16 22 C 0.09 3.38 6.72 42.52 0.29 3.66 16 23 C 0.05 1.46 5.77 -19.84 -0.11 1.35 16 24 C -0.14 -3.65 9.01 22.57 0.20 -3.44 16 25 C 0.10 2.28 11.17 84.61 0.95 3.22 16 26 N -0.50 -13.24 10.35 -196.14 -2.03 -15.27 16 27 C 0.10 2.63 11.17 84.61 0.95 3.57 16 28 C -0.17 -5.23 9.89 22.57 0.22 -5.01 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.75 7.82 -2.38 -0.02 0.73 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.38 5.19 9.05 -74.06 -0.67 4.52 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.34 7.83 8.66 -89.69 -0.78 7.05 16 38 H 0.08 1.72 5.81 -2.39 -0.01 1.71 16 39 H 0.05 0.91 8.12 -2.39 -0.02 0.90 16 40 H 0.20 5.38 8.06 -2.91 -0.02 5.35 16 41 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 2.87 8.07 -2.39 -0.02 2.85 16 43 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 44 H 0.15 3.16 6.30 -2.91 -0.02 3.14 16 45 H 0.19 2.71 8.06 -2.91 -0.02 2.69 16 46 H 0.18 3.65 8.06 -2.91 -0.02 3.63 16 47 H 0.12 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -69.72 398.34 -0.85 -70.57 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -0.46 Total: 25.88 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 6.48 Total: -12.05 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -6.99 Total: -117.14 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -1.91 Total: -13.09 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -69.72 -0.85 -70.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291755381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.696 kcal (2) G-P(sol) polarization free energy of solvation -69.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds